Wall clock time and date at job start Mon Mar 30 2020 03:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32673 * 125.59199 * 2 1 4 4 N 1.38781 * 107.71374 * 180.02562 * 3 2 1 5 5 C 1.36092 * 107.31252 * 0.02562 * 4 3 2 6 6 N 1.31481 * 108.20496 * 179.76722 * 5 4 3 7 7 C 1.34171 * 109.33453 * 0.37657 * 6 5 4 8 8 C 1.34676 * 108.30287 * 359.61954 * 7 6 5 9 9 C 1.50705 * 126.53910 * 180.23268 * 8 7 6 10 10 H 1.09004 * 109.47338 * 324.97297 * 9 8 7 11 11 N 1.46905 * 109.46823 * 204.97437 * 9 8 7 12 12 C 1.50697 * 109.47492 * 84.97342 * 9 8 7 13 13 H 1.08000 * 119.99974 * 0.02562 * 12 9 8 14 14 C 1.37875 * 120.00144 * 179.97438 * 12 9 8 15 15 N 1.31515 * 119.99855 * 180.02562 * 14 12 9 16 16 Si 1.86801 * 119.99965 * 359.97438 * 14 12 9 17 17 H 1.48493 * 109.46845 * 90.00320 * 16 14 12 18 18 H 1.48502 * 109.46798 * 210.00128 * 16 14 12 19 19 H 1.48498 * 109.47090 * 330.00239 * 16 14 12 20 20 O 1.35055 * 107.42680 * 359.97438 * 5 4 3 21 21 H 1.08993 * 109.47246 * 89.99775 * 1 2 3 22 22 H 1.09004 * 109.47533 * 210.00464 * 1 2 3 23 23 H 1.09004 * 109.46783 * 329.99854 * 1 2 3 24 24 H 1.07999 * 126.14603 * 0.04041 * 3 2 1 25 25 H 1.08002 * 125.85096 * 179.88977 * 7 6 5 26 26 H 1.00899 * 110.99555 * 299.99803 * 11 9 8 27 27 H 1.00903 * 111.00038 * 63.95217 * 11 9 8 28 28 H 0.97007 * 119.99820 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2792 1.0789 0.0000 4 7 3.6000 0.6528 -0.0006 5 6 3.5866 -0.7080 -0.0015 6 7 4.8314 -1.1311 -0.0072 7 6 5.6594 -0.0754 -0.0016 8 6 4.9143 1.0465 -0.0007 9 6 5.4266 2.4638 0.0000 10 1 6.3417 2.5192 0.5896 11 7 4.4124 3.3507 0.5856 12 6 5.7139 2.8949 -1.4151 13 1 5.5424 2.2111 -2.2333 14 6 6.1948 4.1625 -1.6655 15 7 6.4451 4.5388 -2.9006 16 14 6.4895 5.3460 -0.2506 17 1 7.8794 5.1862 0.2470 18 1 6.2895 6.7401 -0.7216 19 1 5.5338 5.0525 0.8474 20 8 2.2941 -1.0998 -0.0009 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.9408 2.1045 0.0006 25 1 6.7386 -0.1179 -0.0026 26 1 3.5539 3.3172 0.0566 27 1 4.2490 3.1227 1.5549 28 1 6.7839 5.4306 -3.0767 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261262673.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:46 Heat of formation + Delta-G solvation = 75.869044 kcal Electronic energy + Delta-G solvation = -14900.976600 eV Core-core repulsion = 12341.091414 eV Total energy + Delta-G solvation = -2559.885186 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.00280 -41.06640 -36.79389 -35.38441 -33.90305 -32.90194 -30.36250 -28.19457 -27.59908 -24.29756 -23.18354 -22.75822 -21.51141 -19.08798 -18.26811 -17.82621 -17.31191 -16.63278 -16.04555 -15.91157 -15.12059 -14.90499 -14.80195 -14.42363 -14.13438 -13.82530 -13.65420 -13.08257 -12.77967 -12.50714 -12.43564 -12.01624 -11.55193 -11.29272 -10.77714 -9.58297 -9.13636 -9.05027 -8.25752 -6.42262 0.32411 0.87795 1.17648 1.53837 1.60394 1.65050 1.89322 1.95703 2.60166 3.11586 3.28081 3.56109 3.92951 3.94469 4.11392 4.40951 4.48132 4.59389 4.70472 4.83790 5.03486 5.13343 5.23385 5.45071 5.70267 6.06744 6.17914 6.33622 6.67666 6.75094 6.86231 7.35709 8.87624 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.038389 B = 0.009040 C = 0.008253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.198995 B = 3096.508678 C = 3391.707194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.024 3.976 3 C -0.061 4.061 4 N -0.424 5.424 5 C 0.295 3.705 6 N -0.492 5.492 7 C -0.004 4.004 8 C -0.022 4.022 9 C 0.271 3.729 10 H 0.072 0.928 11 N -0.830 5.830 12 C -0.522 4.522 13 H 0.015 0.985 14 C 0.030 3.970 15 N -0.950 5.950 16 Si 0.936 3.064 17 H -0.296 1.296 18 H -0.315 1.315 19 H -0.155 1.155 20 O -0.183 6.183 21 H 0.105 0.895 22 H 0.099 0.901 23 H 0.127 0.873 24 H 0.217 0.783 25 H 0.202 0.798 26 H 0.331 0.669 27 H 0.332 0.668 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.218 -4.805 10.216 17.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.025 4.025 3 C -0.176 4.176 4 N -0.111 5.111 5 C 0.002 3.998 6 N -0.228 5.228 7 C -0.149 4.149 8 C -0.135 4.135 9 C 0.159 3.841 10 H 0.089 0.911 11 N -0.360 5.360 12 C -0.560 4.560 13 H 0.033 0.967 14 C -0.170 4.170 15 N -0.589 5.589 16 Si 0.761 3.239 17 H -0.223 1.223 18 H -0.243 1.243 19 H -0.076 1.076 20 O -0.079 6.079 21 H 0.123 0.877 22 H 0.117 0.883 23 H 0.145 0.855 24 H 0.233 0.767 25 H 0.219 0.781 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.618 -4.979 9.964 16.831 hybrid contribution 0.024 0.404 -0.366 0.546 sum -12.594 -4.575 9.598 16.482 Atomic orbital electron populations 1.20726 0.78503 1.06952 1.05983 1.23411 0.96485 0.80287 1.02283 1.22568 0.78777 1.02736 1.13531 1.44290 1.06252 1.09510 1.51039 1.22456 0.87592 0.80025 1.09755 1.70201 0.93587 1.31533 1.27448 1.22530 1.00081 0.85203 1.07119 1.22347 0.79237 1.00881 1.11058 1.17849 0.92203 0.79486 0.94543 0.91083 1.59707 1.13780 1.56598 1.05939 1.20841 1.45190 0.99003 0.90977 0.96651 1.25936 0.92581 0.99914 0.98524 1.70109 1.45778 1.20367 1.22619 0.86197 0.79460 0.74758 0.83508 1.22328 1.24297 1.07551 1.84560 1.09886 1.32966 1.80535 0.87681 0.88255 0.85489 0.76661 0.78082 0.85505 0.85529 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.40 71.24 0.74 0.06 15 2 C 0.02 0.57 7.27 24.52 0.18 0.75 15 3 C -0.06 -1.71 10.96 82.42 0.90 -0.80 15 4 N -0.42 -16.00 3.42 -456.69 -1.56 -17.56 15 5 C 0.29 11.76 9.78 179.64 1.76 13.52 15 6 N -0.49 -21.11 11.29 -313.90 -3.54 -24.65 15 7 C 0.00 -0.17 11.77 83.52 0.98 0.81 15 8 C -0.02 -0.90 6.08 40.90 0.25 -0.66 15 9 C 0.27 11.79 2.59 43.42 0.11 11.91 15 10 H 0.07 3.02 7.57 -2.39 -0.02 3.01 15 11 N -0.83 -30.23 5.69 -174.94 -1.00 -31.22 15 12 C -0.52 -29.09 9.29 25.60 0.24 -28.85 15 13 H 0.02 0.99 7.98 -2.91 -0.02 0.97 15 14 C 0.03 1.68 5.47 84.65 0.46 2.14 15 15 N -0.95 -59.47 13.96 21.45 0.30 -59.17 15 16 Si 0.94 42.67 26.94 68.60 1.85 44.51 15 17 H -0.30 -13.55 7.11 99.48 0.71 -12.84 15 18 H -0.31 -14.91 7.11 99.48 0.71 -14.21 15 19 H -0.16 -6.07 5.16 99.48 0.51 -5.56 15 20 O -0.18 -6.03 10.77 -19.50 -0.21 -6.24 15 21 H 0.10 0.88 8.14 -2.39 -0.02 0.86 15 22 H 0.10 0.82 8.14 -2.39 -0.02 0.80 15 23 H 0.13 0.63 8.14 -2.38 -0.02 0.61 15 24 H 0.22 4.55 7.02 -2.91 -0.02 4.53 15 25 H 0.20 7.36 8.06 -2.91 -0.02 7.34 15 26 H 0.33 11.65 6.94 -89.69 -0.62 11.03 15 27 H 0.33 10.09 9.06 -89.69 -0.81 9.28 15 28 H 0.26 15.62 8.31 -92.70 -0.77 14.85 15 Total: -1.00 -75.82 244.43 1.04 -74.78 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -0.42 Total: 20.66 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 5.62 Total: -1.11 kcal Atomic # 7 Polarization: -126.80 SS G_CDS: -5.80 Total: -132.60 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.21 Total: -6.24 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.85 Total: 44.51 kcal Total: -75.82 1.04 -74.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262673.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.648 kcal (2) G-P(sol) polarization free energy of solvation -75.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds