Wall clock time and date at job start Mon Mar 30 2020 04:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48055 * 111.00203 * 2 1 4 4 C 1.54584 * 101.91319 * 265.07081 * 3 2 1 5 5 N 1.47731 * 102.82234 * 335.33905 * 4 3 2 6 6 C 1.35490 * 130.33991 * 195.60665 * 5 4 3 7 7 N 1.30215 * 123.20247 * 178.93611 * 6 5 4 8 8 C 1.34528 * 121.28782 * 0.04271 * 7 6 5 9 9 O 1.22033 * 120.71746 * 180.32332 * 8 7 6 10 10 C 1.47214 * 118.56226 * 0.34786 * 8 7 6 11 11 C 1.40667 * 121.17586 * 180.02562 * 10 8 7 12 12 H 1.07997 * 120.00055 * 317.16252 * 11 10 8 13 13 C 1.39850 * 120.00300 * 137.16050 * 11 10 8 14 14 N 1.31022 * 120.00155 * 160.07816 * 13 11 10 15 15 Si 1.86800 * 119.99874 * 340.08714 * 13 11 10 16 16 H 1.48497 * 109.47175 * 95.32218 * 15 13 11 17 17 H 1.48498 * 109.47064 * 215.32519 * 15 13 11 18 18 H 1.48498 * 109.46835 * 335.32604 * 15 13 11 19 19 C 1.36167 * 108.54252 * 15.33540 * 5 4 3 20 20 H 1.08996 * 109.47070 * 59.87111 * 1 2 3 21 21 H 1.08997 * 109.47276 * 179.87246 * 1 2 3 22 22 H 1.08997 * 109.46857 * 299.86970 * 1 2 3 23 23 H 1.09006 * 110.94575 * 23.23271 * 3 2 1 24 24 H 1.08996 * 110.94873 * 146.90290 * 3 2 1 25 25 H 1.09003 * 110.73797 * 93.65696 * 4 3 2 26 26 H 1.08997 * 110.73749 * 216.97291 * 4 3 2 27 27 H 1.07997 * 118.40319 * 358.95699 * 6 5 4 28 28 H 0.97000 * 120.00100 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9997 1.3822 0.0000 4 6 2.2354 1.6335 -1.5070 5 7 2.4070 0.2681 -2.0442 6 6 2.9117 -0.1510 -3.2296 7 7 3.0172 -1.4073 -3.5556 8 6 2.6222 -2.3822 -2.7170 9 8 2.7312 -3.5564 -3.0308 10 6 2.0550 -2.0018 -1.4128 11 6 1.6250 -2.9760 -0.4937 12 1 1.0604 -3.8303 -0.8369 13 6 1.9286 -2.8383 0.8645 14 7 1.2315 -3.4917 1.7611 15 14 3.3277 -1.7227 1.4004 16 1 2.7867 -0.3864 1.7565 17 1 4.0066 -2.3129 2.5819 18 1 4.3021 -1.5820 0.2886 19 6 1.9593 -0.6219 -1.1159 20 1 -0.3633 0.5158 -0.8888 21 1 -0.3634 -1.0276 -0.0023 22 1 -0.3633 0.5118 0.8911 23 1 1.2660 2.0813 0.4016 24 1 2.9354 1.4404 0.5558 25 1 1.3697 2.1193 -1.9573 26 1 3.1365 2.2264 -1.6630 27 1 3.2430 0.5932 -3.9388 28 1 1.4423 -3.3965 2.7031 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261262950.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:19 Heat of formation + Delta-G solvation = 16.325679 kcal Electronic energy + Delta-G solvation = -15606.826630 eV Core-core repulsion = 13044.359450 eV Total energy + Delta-G solvation = -2562.467180 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.55280 -39.59451 -37.32710 -35.67830 -33.96161 -32.62111 -30.05509 -28.07610 -26.44320 -24.51323 -23.22069 -22.47616 -19.99520 -18.60012 -17.98886 -17.66556 -16.76778 -16.28167 -15.91645 -15.54631 -15.24290 -14.80818 -14.66417 -14.24400 -13.59433 -13.48957 -13.32621 -12.86806 -12.62924 -12.52118 -12.09537 -11.95077 -11.86536 -11.32825 -10.68795 -9.93672 -9.51658 -8.97801 -8.73420 -6.29478 0.46259 0.57773 1.35303 1.44739 1.54699 1.84749 2.31162 2.72666 2.86512 3.27166 3.56458 3.65715 3.88582 4.05708 4.22764 4.50674 4.54214 4.64237 4.72316 4.86038 5.06396 5.12746 5.27477 5.43011 5.76123 6.04851 6.13072 6.45865 6.64493 6.81937 7.23749 7.53182 8.32242 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.023483 B = 0.019245 C = 0.013145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.061599 B = 1454.597254 C = 2129.598343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.479 5.479 3 C 0.024 3.976 4 C 0.066 3.934 5 N -0.503 5.503 6 C 0.392 3.608 7 N -0.645 5.645 8 C 0.478 3.522 9 O -0.602 6.602 10 C -0.086 4.086 11 C -0.449 4.449 12 H 0.028 0.972 13 C 0.064 3.936 14 N -0.857 5.857 15 Si 0.976 3.024 16 H -0.182 1.182 17 H -0.303 1.303 18 H -0.300 1.300 19 C 0.124 3.876 20 H 0.045 0.955 21 H 0.037 0.963 22 H 0.098 0.902 23 H 0.139 0.861 24 H 0.097 0.903 25 H 0.122 0.878 26 H 0.140 0.860 27 H 0.250 0.750 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 21.803 0.317 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.200 5.200 3 C -0.101 4.101 4 C -0.055 4.055 5 N -0.204 5.204 6 C 0.107 3.893 7 N -0.391 5.391 8 C 0.272 3.728 9 O -0.487 6.487 10 C -0.099 4.099 11 C -0.480 4.480 12 H 0.046 0.954 13 C -0.149 4.149 14 N -0.484 5.484 15 Si 0.800 3.200 16 H -0.104 1.104 17 H -0.232 1.232 18 H -0.227 1.227 19 C -0.075 4.075 20 H 0.063 0.937 21 H 0.056 0.944 22 H 0.117 0.883 23 H 0.157 0.843 24 H 0.115 0.885 25 H 0.140 0.860 26 H 0.158 0.842 27 H 0.265 0.735 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.131 20.571 0.232 20.604 hybrid contribution -0.176 -0.544 0.297 0.644 sum 0.955 20.027 0.529 20.057 Atomic orbital electron populations 1.22373 0.84759 1.01874 1.01821 1.59754 1.09973 1.15659 1.34639 1.23872 1.03699 0.87169 0.95368 1.23675 1.06977 0.80206 0.94674 1.46646 1.49893 1.09896 1.13916 1.25101 0.86265 0.93548 0.84342 1.68993 1.33628 1.00902 1.35563 1.20052 0.78742 0.88042 0.85976 1.90583 1.58132 1.21028 1.78933 1.20053 1.02695 0.90694 0.96442 1.18461 1.31236 1.06401 0.91936 0.95402 1.26678 0.97918 0.95547 0.94751 1.69830 1.36504 1.38866 1.03235 0.85454 0.76367 0.82504 0.75634 1.10394 1.23208 1.22716 1.19765 1.09409 0.88939 0.89426 0.93679 0.94356 0.88322 0.84263 0.88488 0.86034 0.84189 0.73475 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.15 9.25 127.69 1.18 2.33 15 2 N -0.48 -16.17 1.73 -716.84 -1.24 -17.41 15 3 C 0.02 0.46 6.55 86.62 0.57 1.03 15 4 C 0.07 0.96 7.75 86.68 0.67 1.63 15 5 N -0.50 -15.02 3.15 -517.42 -1.63 -16.65 15 6 C 0.39 12.23 12.03 180.20 2.17 14.40 15 7 N -0.64 -30.20 10.43 -317.50 -3.31 -33.51 15 8 C 0.48 28.24 7.94 86.64 0.69 28.93 15 9 O -0.60 -41.46 17.59 -5.42 -0.10 -41.55 15 10 C -0.09 -4.78 4.88 -19.53 -0.10 -4.88 15 11 C -0.45 -28.26 8.88 23.25 0.21 -28.05 15 12 H 0.03 2.02 8.06 -2.91 -0.02 2.00 15 13 C 0.06 3.68 5.18 85.20 0.44 4.12 15 14 N -0.86 -49.75 13.94 21.82 0.30 -49.44 15 15 Si 0.98 44.98 24.69 68.60 1.69 46.67 15 16 H -0.18 -6.71 5.22 99.48 0.52 -6.19 15 17 H -0.30 -13.80 7.11 99.48 0.71 -13.09 15 18 H -0.30 -15.14 7.11 99.48 0.71 -14.43 15 19 C 0.12 5.14 4.27 133.20 0.57 5.71 15 20 H 0.04 1.17 8.14 -2.39 -0.02 1.15 15 21 H 0.04 1.59 7.82 -2.39 -0.02 1.57 15 22 H 0.10 2.35 8.11 -2.39 -0.02 2.34 15 23 H 0.14 1.50 7.77 -2.38 -0.02 1.48 15 24 H 0.10 1.80 7.66 -2.39 -0.02 1.78 15 25 H 0.12 1.09 8.14 -2.39 -0.02 1.07 15 26 H 0.14 0.96 8.14 -2.39 -0.02 0.94 15 27 H 0.25 3.97 8.06 -2.91 -0.02 3.95 15 28 H 0.29 15.08 8.30 -92.71 -0.77 14.31 15 Total: -1.00 -92.92 237.89 3.10 -89.82 By element: Atomic # 1 Polarization: -4.11 SS G_CDS: 0.98 Total: -3.13 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: 6.40 Total: 25.21 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -5.88 Total: -117.02 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -0.10 Total: -41.55 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.69 Total: 46.67 kcal Total: -92.92 3.10 -89.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262950.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.141 kcal (2) G-P(sol) polarization free energy of solvation -92.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds