Wall clock time and date at job start Mon Mar 30 2020 03:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99714 * 2 1 4 4 H 1.48501 * 109.47433 * 274.67352 * 3 2 1 5 5 H 1.48503 * 109.47088 * 34.68023 * 3 2 1 6 6 H 1.48502 * 109.46994 * 154.67613 * 3 2 1 7 7 C 1.37871 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00096 * 185.97239 * 7 2 1 9 9 C 1.50704 * 120.00204 * 5.97028 * 7 2 1 10 10 H 1.09007 * 110.85448 * 308.96928 * 9 7 2 11 11 C 1.54624 * 111.00062 * 72.78200 * 9 7 2 12 12 C 1.51282 * 104.19143 * 142.93066 * 11 9 7 13 13 O 1.21281 * 124.94043 * 164.01397 * 12 11 9 14 14 N 1.34417 * 110.11916 * 343.74927 * 12 11 9 15 15 C 1.38921 * 124.35135 * 179.56853 * 14 12 11 16 16 N 1.31123 * 125.78320 * 179.71591 * 15 14 12 17 17 C 1.34275 * 109.29937 * 179.86851 * 16 15 14 18 18 C 1.34485 * 108.29230 * 0.39945 * 17 16 15 19 19 N 1.36001 * 125.78215 * 0.02562 * 15 14 12 20 20 H 0.97002 * 126.48867 * 359.95734 * 19 15 14 21 21 C 1.46756 * 111.29952 * 359.59268 * 14 12 11 22 22 H 0.96996 * 120.00181 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.48423 * 24.25856 * 11 9 7 24 24 H 1.08996 * 110.48616 * 261.60751 * 11 9 7 25 25 H 1.07993 * 125.85621 * 180.15782 * 17 16 15 26 26 H 1.08008 * 126.52568 * 179.78829 * 18 17 16 27 27 H 1.09000 * 110.25006 * 136.01720 * 21 14 12 28 28 H 1.09000 * 110.24514 * 257.92631 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3978 2.1036 -1.3954 5 1 1.4995 2.6221 0.7967 6 1 3.5926 1.4137 0.5989 7 6 2.0046 -1.1940 -0.0005 8 1 3.0802 -1.1966 0.0968 9 6 1.2573 -2.4956 -0.1369 10 1 0.4402 -2.5511 0.5825 11 6 0.7376 -2.6876 -1.5805 12 6 0.8953 -4.1701 -1.8372 13 8 0.3587 -4.7800 -2.7378 14 7 1.7211 -4.7120 -0.9255 15 6 2.0651 -6.0572 -0.8810 16 7 2.8706 -6.6141 -0.0090 17 6 2.9667 -7.9279 -0.2695 18 6 2.2047 -8.2021 -1.3432 19 7 1.6281 -7.0186 -1.7380 20 1 1.0237 -6.8929 -2.4862 21 6 2.2121 -3.7001 0.0171 22 1 -0.4850 0.8400 0.0004 23 1 1.3411 -2.1125 -2.2828 24 1 -0.3108 -2.3977 -1.6502 25 1 3.5578 -8.6412 0.2854 26 1 2.0710 -9.1685 -1.8066 27 1 2.1737 -4.0840 1.0366 28 1 3.2314 -3.4101 -0.2379 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261274570.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:26 Heat of formation + Delta-G solvation = 25.537300 kcal Electronic energy + Delta-G solvation = -14682.810214 eV Core-core repulsion = 12120.742480 eV Total energy + Delta-G solvation = -2562.067734 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.82278 -39.65553 -36.18405 -33.49227 -32.19188 -31.21728 -28.12084 -27.08282 -24.95657 -22.16694 -21.27400 -20.08046 -19.63143 -17.76446 -16.81073 -15.97599 -15.48882 -14.90006 -14.59903 -14.19707 -13.73433 -13.41913 -13.07172 -12.98960 -12.42719 -12.23104 -11.17033 -10.93457 -10.78222 -10.50479 -10.00779 -9.90636 -9.78050 -9.71527 -9.51661 -9.08385 -8.60223 -7.53407 -6.24356 -4.29482 2.08497 2.66176 2.87166 3.22014 3.30398 3.33102 3.59633 3.71158 4.28472 5.01190 5.07247 5.27419 5.36488 5.58446 5.83845 6.00942 6.06567 6.24891 6.38868 6.52935 6.69925 6.91612 7.07575 7.23687 7.46099 7.66417 7.72560 8.06785 8.29829 8.47284 8.74408 9.37144 10.85732 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055600 B = 0.007114 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.479230 B = 3934.714627 C = 4270.275949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.521 4.521 8 H 0.066 0.934 9 C 0.045 3.955 10 H 0.060 0.940 11 C -0.132 4.132 12 C 0.519 3.481 13 O -0.553 6.553 14 N -0.532 5.532 15 C 0.459 3.541 16 N -0.511 5.511 17 C -0.012 4.012 18 C -0.073 4.073 19 N -0.574 5.574 20 H 0.427 0.573 21 C 0.118 3.882 22 H 0.265 0.735 23 H 0.103 0.897 24 H 0.099 0.901 25 H 0.172 0.828 26 H 0.177 0.823 27 H 0.077 0.923 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.925 -9.845 -1.894 10.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.559 4.559 8 H 0.085 0.915 9 C 0.026 3.974 10 H 0.078 0.922 11 C -0.172 4.172 12 C 0.311 3.689 13 O -0.430 6.430 14 N -0.263 5.263 15 C 0.107 3.893 16 N -0.238 5.238 17 C -0.160 4.160 18 C -0.206 4.206 19 N -0.186 5.186 20 H 0.268 0.732 21 C -0.003 4.003 22 H 0.075 0.925 23 H 0.121 0.879 24 H 0.117 0.883 25 H 0.189 0.811 26 H 0.194 0.806 27 H 0.095 0.905 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.896 -9.648 -1.713 10.218 hybrid contribution -0.270 0.383 -1.049 1.149 sum 2.626 -9.265 -2.762 10.018 Atomic orbital electron populations 1.69947 1.06064 1.27294 1.48746 1.24993 0.94867 0.99463 0.94212 0.86491 0.79983 0.82916 0.78161 1.20538 1.21124 1.19579 1.20935 0.93583 0.89325 1.52052 0.91546 1.19774 0.94491 0.91494 0.91621 0.92199 1.22618 1.04691 0.86924 1.02982 1.22297 0.75329 0.92419 0.78863 1.90546 1.50072 1.69229 1.33145 1.45400 1.45529 1.02596 1.32731 1.19533 0.96005 0.83446 0.90269 1.70429 1.20145 1.08016 1.25250 1.22137 1.03263 0.92351 0.98243 1.22556 1.04948 0.90217 1.02874 1.43480 1.40171 1.07285 1.27676 0.73183 1.22711 0.99804 0.86471 0.91276 0.92517 0.87933 0.88293 0.81093 0.80601 0.90451 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.39 13.18 55.43 0.73 -22.66 15 2 C 0.07 1.73 5.39 -17.82 -0.10 1.63 15 3 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 15 4 H -0.28 -6.13 7.11 56.52 0.40 -5.72 15 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 15 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 7 C -0.52 -12.76 8.36 -34.44 -0.29 -13.05 15 8 H 0.07 1.59 7.58 -52.48 -0.40 1.19 15 9 C 0.05 1.02 2.88 -90.14 -0.26 0.76 15 10 H 0.06 1.45 8.08 -51.93 -0.42 1.03 15 11 C -0.13 -2.82 6.28 -26.74 -0.17 -2.99 15 12 C 0.52 10.77 7.98 -10.86 -0.09 10.68 15 13 O -0.55 -11.88 15.92 5.56 0.09 -11.80 15 14 N -0.53 -10.60 3.11 -115.56 -0.36 -10.96 15 15 C 0.46 8.72 8.51 -319.12 -2.72 6.01 15 16 N -0.51 -9.46 11.09 -13.83 -0.15 -9.61 15 17 C -0.01 -0.17 11.85 -17.81 -0.21 -0.39 15 18 C -0.07 -0.96 12.04 -16.36 -0.20 -1.16 15 19 N -0.57 -9.31 5.98 -13.10 -0.08 -9.39 15 20 H 0.43 6.70 7.20 -40.82 -0.29 6.41 15 21 C 0.12 2.35 6.69 -3.13 -0.02 2.33 15 22 H 0.27 6.72 8.31 -40.82 -0.34 6.38 15 23 H 0.10 2.19 7.89 -51.93 -0.41 1.78 15 24 H 0.10 2.19 8.14 -51.93 -0.42 1.77 15 25 H 0.17 1.87 8.06 -52.49 -0.42 1.45 15 26 H 0.18 1.55 8.06 -52.48 -0.42 1.12 15 27 H 0.08 1.50 8.14 -51.93 -0.42 1.07 15 28 H 0.08 1.49 7.72 -51.93 -0.40 1.09 15 LS Contribution 249.29 15.07 3.76 3.76 Total: -1.00 -28.13 249.29 -7.83 -35.96 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -2.75 Total: 6.20 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -4.04 Total: 3.83 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.14 Total: -52.61 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.13 -7.83 -35.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261274570.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.497 kcal (2) G-P(sol) polarization free energy of solvation -28.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds