Wall clock time and date at job start Mon Mar 30 2020 03:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99714 * 2 1 4 4 H 1.48501 * 109.47433 * 274.67352 * 3 2 1 5 5 H 1.48503 * 109.47088 * 34.68023 * 3 2 1 6 6 H 1.48502 * 109.46994 * 154.67613 * 3 2 1 7 7 C 1.37871 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00096 * 185.97239 * 7 2 1 9 9 C 1.50704 * 120.00204 * 5.97028 * 7 2 1 10 10 H 1.09007 * 110.85448 * 308.96928 * 9 7 2 11 11 C 1.54624 * 111.00062 * 72.78200 * 9 7 2 12 12 C 1.51282 * 104.19143 * 142.93066 * 11 9 7 13 13 O 1.21281 * 124.94043 * 164.01397 * 12 11 9 14 14 N 1.34417 * 110.11916 * 343.74927 * 12 11 9 15 15 C 1.38921 * 124.35135 * 179.56853 * 14 12 11 16 16 N 1.31123 * 125.78320 * 179.71591 * 15 14 12 17 17 C 1.34275 * 109.29937 * 179.86851 * 16 15 14 18 18 C 1.34485 * 108.29230 * 0.39945 * 17 16 15 19 19 N 1.36001 * 125.78215 * 0.02562 * 15 14 12 20 20 H 0.97002 * 126.48867 * 359.95734 * 19 15 14 21 21 C 1.46756 * 111.29952 * 359.59268 * 14 12 11 22 22 H 0.96996 * 120.00181 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.48423 * 24.25856 * 11 9 7 24 24 H 1.08996 * 110.48616 * 261.60751 * 11 9 7 25 25 H 1.07993 * 125.85621 * 180.15782 * 17 16 15 26 26 H 1.08008 * 126.52568 * 179.78829 * 18 17 16 27 27 H 1.09000 * 110.25006 * 136.01720 * 21 14 12 28 28 H 1.09000 * 110.24514 * 257.92631 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3978 2.1036 -1.3954 5 1 1.4995 2.6221 0.7967 6 1 3.5926 1.4137 0.5989 7 6 2.0046 -1.1940 -0.0005 8 1 3.0802 -1.1966 0.0968 9 6 1.2573 -2.4956 -0.1369 10 1 0.4402 -2.5511 0.5825 11 6 0.7376 -2.6876 -1.5805 12 6 0.8953 -4.1701 -1.8372 13 8 0.3587 -4.7800 -2.7378 14 7 1.7211 -4.7120 -0.9255 15 6 2.0651 -6.0572 -0.8810 16 7 2.8706 -6.6141 -0.0090 17 6 2.9667 -7.9279 -0.2695 18 6 2.2047 -8.2021 -1.3432 19 7 1.6281 -7.0186 -1.7380 20 1 1.0237 -6.8929 -2.4862 21 6 2.2121 -3.7001 0.0171 22 1 -0.4850 0.8400 0.0004 23 1 1.3411 -2.1125 -2.2828 24 1 -0.3108 -2.3977 -1.6502 25 1 3.5578 -8.6412 0.2854 26 1 2.0710 -9.1685 -1.8066 27 1 2.1737 -4.0840 1.0366 28 1 3.2314 -3.4101 -0.2379 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261274570.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:26 Heat of formation + Delta-G solvation = 10.012727 kcal Electronic energy + Delta-G solvation = -14683.483410 eV Core-core repulsion = 12120.742480 eV Total energy + Delta-G solvation = -2562.740930 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.11972 -41.23163 -37.84745 -35.26778 -33.47862 -32.92494 -29.51628 -28.73820 -26.75716 -23.56654 -22.78588 -21.55790 -21.03655 -19.30735 -18.60344 -17.39528 -17.08526 -16.51159 -16.31263 -15.67852 -15.11450 -14.74965 -14.61645 -14.36118 -14.23118 -13.89914 -12.97954 -12.70753 -12.57610 -12.23359 -11.62983 -11.50267 -11.26509 -11.13625 -10.99941 -10.86830 -10.51790 -8.83058 -8.17547 -6.27575 0.69640 1.24919 1.48436 1.51812 1.52227 1.60754 2.23921 2.41508 2.45563 3.14921 3.49646 3.90210 4.04114 4.35520 4.36831 4.47960 4.59113 4.71617 4.80535 4.98984 5.22580 5.32430 5.55345 5.59231 5.78878 5.88045 6.17214 6.35500 6.79844 6.86140 7.07366 7.41910 8.92781 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055600 B = 0.007114 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.479230 B = 3934.714627 C = 4270.275949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.023 3.977 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.071 0.929 9 C 0.044 3.956 10 H 0.035 0.965 11 C -0.123 4.123 12 C 0.521 3.479 13 O -0.563 6.563 14 N -0.530 5.530 15 C 0.414 3.586 16 N -0.531 5.531 17 C -0.033 4.033 18 C -0.044 4.044 19 N -0.573 5.573 20 H 0.429 0.571 21 C 0.131 3.869 22 H 0.265 0.735 23 H 0.101 0.899 24 H 0.085 0.915 25 H 0.206 0.794 26 H 0.227 0.773 27 H 0.081 0.919 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 -11.307 -2.169 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.089 0.911 9 C 0.024 3.976 10 H 0.053 0.947 11 C -0.163 4.163 12 C 0.313 3.687 13 O -0.442 6.442 14 N -0.260 5.260 15 C 0.064 3.936 16 N -0.258 5.258 17 C -0.180 4.180 18 C -0.176 4.176 19 N -0.184 5.184 20 H 0.270 0.730 21 C 0.011 3.989 22 H 0.074 0.926 23 H 0.119 0.881 24 H 0.104 0.896 25 H 0.222 0.778 26 H 0.243 0.757 27 H 0.099 0.901 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.038 -11.135 -1.976 12.008 hybrid contribution -0.589 0.669 -0.940 1.296 sum 3.449 -10.466 -2.916 11.399 Atomic orbital electron populations 1.70055 1.07376 1.27899 1.50041 1.25704 0.95506 1.02470 0.94082 0.85548 0.78954 0.79176 0.78036 1.20285 1.21361 1.18821 1.21247 0.93940 0.90183 1.51316 0.91116 1.19629 0.94221 0.92143 0.91567 0.94661 1.22391 1.03721 0.87946 1.02252 1.21966 0.75722 0.91934 0.79124 1.90527 1.50735 1.69261 1.33658 1.45151 1.45178 1.03523 1.32098 1.19556 0.98455 0.83279 0.92353 1.70364 1.19895 1.10146 1.25408 1.22819 1.04377 0.91383 0.99386 1.23440 1.02025 0.90710 1.01464 1.43627 1.39896 1.07725 1.27188 0.73007 1.22459 0.99131 0.85698 0.91650 0.92617 0.88101 0.89643 0.77760 0.75700 0.90068 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.25 13.18 21.45 0.28 -48.97 15 2 C 0.02 1.17 5.39 84.65 0.46 1.62 15 3 Si 0.96 40.29 29.54 68.60 2.03 42.31 15 4 H -0.28 -11.49 7.11 99.48 0.71 -10.79 15 5 H -0.29 -12.13 7.11 99.48 0.71 -11.43 15 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 7 C -0.53 -26.02 8.36 25.60 0.21 -25.80 15 8 H 0.07 3.35 7.58 -2.91 -0.02 3.33 15 9 C 0.04 1.99 2.88 -10.48 -0.03 1.96 15 10 H 0.04 1.77 8.08 -2.38 -0.02 1.75 15 11 C -0.12 -5.36 6.28 30.59 0.19 -5.17 15 12 C 0.52 21.72 7.98 87.90 0.70 22.43 15 13 O -0.56 -24.12 15.92 -3.03 -0.05 -24.16 15 14 N -0.53 -21.00 3.11 -638.10 -1.98 -22.99 15 15 C 0.41 15.26 8.51 260.20 2.22 17.48 15 16 N -0.53 -18.73 11.09 -197.68 -2.19 -20.93 15 17 C -0.03 -0.85 11.85 83.46 0.99 0.13 15 18 C -0.04 -0.99 12.04 82.95 1.00 0.01 15 19 N -0.57 -17.33 5.98 -195.35 -1.17 -18.50 15 20 H 0.43 12.68 7.20 -92.71 -0.67 12.01 15 21 C 0.13 5.25 6.69 86.83 0.58 5.83 15 22 H 0.26 13.62 8.31 -92.71 -0.77 12.85 15 23 H 0.10 4.39 7.89 -2.39 -0.02 4.37 15 24 H 0.09 3.93 8.14 -2.39 -0.02 3.91 15 25 H 0.21 3.65 8.06 -2.91 -0.02 3.63 15 26 H 0.23 2.65 8.06 -2.91 -0.02 2.63 15 27 H 0.08 3.15 8.14 -2.39 -0.02 3.13 15 28 H 0.08 3.13 7.72 -2.39 -0.02 3.11 15 Total: -1.00 -59.98 249.29 3.75 -56.23 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.52 Total: 18.51 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 6.32 Total: 18.49 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -5.06 Total: -111.38 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.05 Total: -24.16 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.31 kcal Total: -59.98 3.75 -56.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261274570.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.240 kcal (2) G-P(sol) polarization free energy of solvation -59.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds