Wall clock time and date at job start Mon Mar 30 2020 03:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00084 * 2 1 4 4 H 1.48505 * 109.47449 * 240.00445 * 3 2 1 5 5 H 1.48502 * 109.47111 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47408 * 120.00271 * 3 2 1 7 7 C 1.37879 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99667 * 0.02562 * 7 2 1 10 10 H 1.08994 * 110.85665 * 62.33578 * 9 7 2 11 11 C 1.54623 * 110.96711 * 298.54100 * 9 7 2 12 12 C 1.51282 * 104.31101 * 216.98414 * 11 9 7 13 13 O 1.21308 * 124.94094 * 196.27924 * 12 11 9 14 14 N 1.34735 * 109.93792 * 16.31290 * 12 11 9 15 15 C 1.40767 * 124.30040 * 180.39862 * 14 12 11 16 16 C 1.40253 * 126.07985 * 179.64313 * 15 14 12 17 17 N 1.30834 * 108.33729 * 179.81880 * 16 15 14 18 18 N 1.40072 * 108.36210 * 0.43760 * 17 16 15 19 19 H 0.97001 * 126.04783 * 179.74220 * 18 17 16 20 20 C 1.35747 * 126.07926 * 359.95191 * 15 14 12 21 21 C 1.46768 * 111.35098 * 0.35387 * 14 12 11 22 22 H 0.97001 * 119.99975 * 359.97438 * 1 2 3 23 23 H 1.09002 * 110.48860 * 335.72888 * 11 9 7 24 24 H 1.08998 * 110.48497 * 98.23781 * 11 9 7 25 25 H 1.08000 * 125.83413 * 359.97438 * 16 15 14 26 26 H 1.08001 * 126.22004 * 359.97438 * 20 15 14 27 27 H 1.09000 * 110.24529 * 224.01554 * 21 14 12 28 28 H 1.09007 * 110.24087 * 102.01818 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6478 -2.5982 -0.9041 11 6 0.3765 -2.6342 1.2663 12 6 0.4625 -4.1013 1.6253 13 8 -0.2919 -4.6770 2.3810 14 7 1.5002 -4.6716 0.9824 15 6 1.8518 -6.0302 1.0926 16 6 2.9175 -6.6634 0.4365 17 7 2.9288 -7.9229 0.7905 18 7 1.8661 -8.1418 1.6764 19 1 1.6356 -8.9866 2.0936 20 6 1.2160 -6.9617 1.8481 21 6 2.2160 -3.6956 0.1522 22 1 -0.4850 0.8401 0.0004 23 1 0.7766 -2.0200 2.0729 24 1 -0.6545 -2.3541 1.0501 25 1 3.6119 -6.1913 -0.2427 26 1 0.3508 -6.7948 2.4725 27 1 2.4432 -4.1250 -0.8235 28 1 3.1334 -3.3790 0.6487 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261280019.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:31 Heat of formation + Delta-G solvation = 38.742382 kcal Electronic energy + Delta-G solvation = -14638.778994 eV Core-core repulsion = 12077.283876 eV Total energy + Delta-G solvation = -2561.495119 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.09299 -39.25505 -35.84365 -33.49212 -31.43917 -30.97146 -28.10016 -26.97341 -24.76351 -22.29556 -21.21872 -20.09542 -18.77443 -17.64555 -16.62827 -15.87129 -15.10009 -14.57430 -14.46309 -14.31280 -13.95262 -13.11703 -12.83117 -12.41096 -12.26955 -12.16547 -11.09309 -10.94343 -10.82304 -10.69913 -10.36125 -9.89843 -9.61702 -9.49141 -9.41503 -8.90490 -8.51455 -7.26793 -6.18774 -4.24985 1.97846 2.69760 2.89548 3.25214 3.31184 3.32582 3.62197 3.68143 4.31646 4.98001 5.11719 5.14697 5.54786 5.71571 5.77651 5.93539 6.12265 6.30668 6.39064 6.61177 6.74459 7.30223 7.31421 7.42872 7.53274 7.57651 7.77217 7.84741 8.13846 8.75329 8.85204 9.41621 10.90803 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055129 B = 0.007104 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.776163 B = 3940.678023 C = 4323.911859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.064 0.936 9 C 0.047 3.953 10 H 0.047 0.953 11 C -0.123 4.123 12 C 0.511 3.489 13 O -0.553 6.553 14 N -0.542 5.542 15 C 0.024 3.976 16 C 0.038 3.962 17 N -0.288 5.288 18 N -0.480 5.480 19 H 0.441 0.559 20 C 0.024 3.976 21 C 0.106 3.894 22 H 0.265 0.735 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.186 0.814 26 H 0.189 0.811 27 H 0.064 0.936 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.379 -9.128 1.240 9.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.137 4.137 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.082 0.918 9 C 0.028 3.972 10 H 0.065 0.935 11 C -0.164 4.164 12 C 0.303 3.697 13 O -0.432 6.432 14 N -0.269 5.269 15 C -0.079 4.079 16 C -0.150 4.150 17 N -0.111 5.111 18 N -0.193 5.193 19 H 0.285 0.715 20 C -0.124 4.124 21 C -0.016 4.016 22 H 0.075 0.925 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.203 0.797 26 H 0.206 0.794 27 H 0.083 0.917 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.407 -10.374 1.484 11.020 hybrid contribution -0.080 1.332 0.288 1.365 sum 3.327 -9.043 1.772 9.797 Atomic orbital electron populations 1.69933 1.05983 1.27271 1.48951 1.24976 0.94889 0.99326 0.94460 0.86575 0.79546 0.82672 0.78757 1.20101 1.21251 1.20123 1.20911 0.92977 0.89449 1.52740 0.91813 1.19661 0.92131 0.91527 0.93885 0.93496 1.22381 1.04251 0.88027 1.01716 1.22150 0.78153 0.91456 0.77983 1.90532 1.44691 1.70663 1.37324 1.45740 1.30240 1.04943 1.45931 1.17827 0.99786 0.85719 1.04616 1.23679 0.98848 0.91002 1.01511 1.77163 1.07386 1.17262 1.09290 1.46054 1.24262 1.10098 1.38849 0.71550 1.22512 1.00895 0.85305 1.03661 1.22583 0.96898 0.89033 0.93067 0.92526 0.88611 0.88486 0.79705 0.79396 0.91707 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.50 12.40 55.43 0.69 -22.81 15 2 C 0.07 1.70 5.34 -17.82 -0.10 1.60 15 3 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 15 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 5 H -0.29 -6.37 7.11 56.52 0.40 -5.96 15 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 7 C -0.52 -12.80 8.43 -34.44 -0.29 -13.09 15 8 H 0.06 1.51 7.66 -52.49 -0.40 1.10 15 9 C 0.05 1.05 3.08 -90.14 -0.28 0.77 15 10 H 0.05 1.12 8.14 -51.93 -0.42 0.70 15 11 C -0.12 -2.77 5.45 -26.74 -0.15 -2.91 15 12 C 0.51 10.95 7.99 -10.72 -0.09 10.86 15 13 O -0.55 -12.59 15.66 5.53 0.09 -12.50 15 14 N -0.54 -10.41 3.17 -112.39 -0.36 -10.77 15 15 C 0.02 0.41 6.80 -83.88 -0.57 -0.16 15 16 C 0.04 0.58 11.53 -17.22 -0.20 0.38 15 17 N -0.29 -4.32 12.69 30.70 0.39 -3.93 15 18 N -0.48 -6.35 7.40 30.69 0.23 -6.12 15 19 H 0.44 4.07 8.96 -182.62 -1.64 2.43 15 20 C 0.02 0.38 11.18 -16.68 -0.19 0.19 15 21 C 0.11 1.97 6.48 -3.12 -0.02 1.95 15 22 H 0.26 6.79 8.31 -40.82 -0.34 6.45 15 23 H 0.10 2.23 7.89 -51.93 -0.41 1.82 15 24 H 0.10 2.31 7.97 -51.93 -0.41 1.90 15 25 H 0.19 2.32 8.06 -52.49 -0.42 1.90 15 26 H 0.19 2.99 6.51 -52.49 -0.34 2.65 15 27 H 0.06 1.07 8.13 -51.93 -0.42 0.65 15 28 H 0.07 1.28 7.78 -51.92 -0.40 0.87 15 LS Contribution 247.86 15.07 3.74 3.74 Total: -1.00 -28.66 247.86 -6.13 -34.79 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.01 Total: 3.27 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.87 Total: -0.40 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.95 Total: -43.63 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.66 -6.13 -34.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280019.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.535 kcal (2) G-P(sol) polarization free energy of solvation -28.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds