Wall clock time and date at job start Mon Mar 30 2020 03:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00084 * 2 1 4 4 H 1.48505 * 109.47449 * 240.00445 * 3 2 1 5 5 H 1.48502 * 109.47111 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47408 * 120.00271 * 3 2 1 7 7 C 1.37879 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99667 * 0.02562 * 7 2 1 10 10 H 1.08994 * 110.85665 * 62.33578 * 9 7 2 11 11 C 1.54623 * 110.96711 * 298.54100 * 9 7 2 12 12 C 1.51282 * 104.31101 * 216.98414 * 11 9 7 13 13 O 1.21308 * 124.94094 * 196.27924 * 12 11 9 14 14 N 1.34735 * 109.93792 * 16.31290 * 12 11 9 15 15 C 1.40767 * 124.30040 * 180.39862 * 14 12 11 16 16 C 1.40253 * 126.07985 * 179.64313 * 15 14 12 17 17 N 1.30834 * 108.33729 * 179.81880 * 16 15 14 18 18 N 1.40072 * 108.36210 * 0.43760 * 17 16 15 19 19 H 0.97001 * 126.04783 * 179.74220 * 18 17 16 20 20 C 1.35747 * 126.07926 * 359.95191 * 15 14 12 21 21 C 1.46768 * 111.35098 * 0.35387 * 14 12 11 22 22 H 0.97001 * 119.99975 * 359.97438 * 1 2 3 23 23 H 1.09002 * 110.48860 * 335.72888 * 11 9 7 24 24 H 1.08998 * 110.48497 * 98.23781 * 11 9 7 25 25 H 1.08000 * 125.83413 * 359.97438 * 16 15 14 26 26 H 1.08001 * 126.22004 * 359.97438 * 20 15 14 27 27 H 1.09000 * 110.24529 * 224.01554 * 21 14 12 28 28 H 1.09007 * 110.24087 * 102.01818 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6478 -2.5982 -0.9041 11 6 0.3765 -2.6342 1.2663 12 6 0.4625 -4.1013 1.6253 13 8 -0.2919 -4.6770 2.3810 14 7 1.5002 -4.6716 0.9824 15 6 1.8518 -6.0302 1.0926 16 6 2.9175 -6.6634 0.4365 17 7 2.9288 -7.9229 0.7905 18 7 1.8661 -8.1418 1.6764 19 1 1.6356 -8.9866 2.0936 20 6 1.2160 -6.9617 1.8481 21 6 2.2160 -3.6956 0.1522 22 1 -0.4850 0.8401 0.0004 23 1 0.7766 -2.0200 2.0729 24 1 -0.6545 -2.3541 1.0501 25 1 3.6119 -6.1913 -0.2427 26 1 0.3508 -6.7948 2.4725 27 1 2.4432 -4.1250 -0.8235 28 1 3.1334 -3.3790 0.6487 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261280019.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:30 Heat of formation + Delta-G solvation = 20.076856 kcal Electronic energy + Delta-G solvation = -14639.588392 eV Core-core repulsion = 12077.283876 eV Total energy + Delta-G solvation = -2562.304517 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.38013 -40.81709 -37.53622 -35.22974 -33.04034 -32.24326 -29.58424 -28.65782 -26.53200 -23.62376 -22.67004 -21.65231 -20.23625 -19.08251 -18.41430 -17.36724 -16.77527 -16.28617 -15.94056 -15.51587 -15.37372 -14.67760 -14.53013 -14.11609 -13.85587 -13.67835 -12.87991 -12.68861 -12.48849 -12.18011 -12.03517 -11.44647 -11.36321 -11.09992 -10.71851 -10.65282 -10.38675 -8.65650 -8.11535 -6.22634 0.75350 1.26769 1.52042 1.52817 1.59522 1.70665 2.12607 2.30239 2.49019 3.21608 3.61308 3.90840 4.01960 4.27411 4.46958 4.49592 4.59125 4.71304 4.93232 4.97128 5.20770 5.47174 5.65363 5.84810 5.91143 6.07308 6.26954 6.32096 6.62632 6.85568 7.21006 7.47213 8.97692 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055129 B = 0.007104 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.776163 B = 3940.678023 C = 4323.911859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.018 3.982 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.529 4.529 8 H 0.073 0.927 9 C 0.041 3.959 10 H 0.026 0.974 11 C -0.115 4.115 12 C 0.508 3.492 13 O -0.573 6.573 14 N -0.534 5.534 15 C -0.013 4.013 16 C 0.045 3.955 17 N -0.294 5.294 18 N -0.461 5.461 19 H 0.458 0.542 20 C 0.033 3.967 21 C 0.116 3.884 22 H 0.262 0.738 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.212 0.788 26 H 0.186 0.814 27 H 0.092 0.908 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 -10.077 0.988 11.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.567 4.567 8 H 0.092 0.908 9 C 0.022 3.978 10 H 0.044 0.956 11 C -0.156 4.156 12 C 0.299 3.701 13 O -0.454 6.454 14 N -0.259 5.259 15 C -0.115 4.115 16 C -0.143 4.143 17 N -0.117 5.117 18 N -0.175 5.175 19 H 0.306 0.694 20 C -0.116 4.116 21 C -0.005 4.005 22 H 0.071 0.929 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.228 0.772 26 H 0.203 0.797 27 H 0.111 0.889 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.144 -11.383 1.225 12.551 hybrid contribution -0.613 1.528 0.374 1.688 sum 4.532 -9.855 1.599 10.964 Atomic orbital electron populations 1.70064 1.07367 1.27690 1.50419 1.25724 0.95525 1.02488 0.94457 0.85627 0.78253 0.78877 0.78991 1.19281 1.21824 1.19621 1.21297 0.93608 0.90246 1.51543 0.90840 1.19584 0.92701 0.92790 0.92750 0.95571 1.22142 1.02843 0.89120 1.01452 1.21822 0.78917 0.90948 0.78385 1.90511 1.45662 1.70797 1.38383 1.45543 1.29283 1.05980 1.45066 1.18094 1.01694 0.84892 1.06844 1.24035 0.98348 0.90677 1.01224 1.77168 1.07754 1.17219 1.09570 1.46085 1.23221 1.10247 1.37968 0.69413 1.22524 1.00461 0.85912 1.02740 1.22479 0.95829 0.87598 0.94586 0.92866 0.89952 0.90816 0.77189 0.79676 0.88932 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.63 12.40 21.45 0.27 -49.36 15 2 C 0.02 0.92 5.34 84.66 0.45 1.37 15 3 Si 0.96 40.20 29.54 68.60 2.03 42.22 15 4 H -0.27 -10.84 7.11 99.48 0.71 -10.14 15 5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 15 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 7 C -0.53 -25.59 8.43 25.60 0.22 -25.37 15 8 H 0.07 3.34 7.66 -2.91 -0.02 3.32 15 9 C 0.04 1.82 3.08 -10.48 -0.03 1.79 15 10 H 0.03 1.27 8.14 -2.39 -0.02 1.25 15 11 C -0.11 -5.28 5.45 30.59 0.17 -5.11 15 12 C 0.51 21.79 7.99 87.85 0.70 22.50 15 13 O -0.57 -26.16 15.66 -3.12 -0.05 -26.21 15 14 N -0.53 -19.74 3.17 -627.89 -1.99 -21.73 15 15 C -0.01 -0.41 6.80 37.62 0.26 -0.15 15 16 C 0.05 1.23 11.53 85.33 0.98 2.22 15 17 N -0.29 -7.91 12.69 -56.77 -0.72 -8.63 15 18 N -0.46 -10.93 7.40 -56.82 -0.42 -11.35 15 19 H 0.46 7.17 8.96 -213.34 -1.91 5.25 15 20 C 0.03 0.97 11.18 83.50 0.93 1.90 15 21 C 0.12 4.10 6.48 86.83 0.56 4.67 15 22 H 0.26 13.72 8.31 -92.71 -0.77 12.95 15 23 H 0.08 3.95 7.89 -2.39 -0.02 3.93 15 24 H 0.07 3.68 7.97 -2.39 -0.02 3.66 15 25 H 0.21 4.44 8.06 -2.91 -0.02 4.41 15 26 H 0.19 5.66 6.51 -2.91 -0.02 5.64 15 27 H 0.09 2.78 8.13 -2.39 -0.02 2.76 15 28 H 0.08 2.75 7.78 -2.38 -0.02 2.73 15 Total: -1.00 -60.25 247.86 2.63 -57.62 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -0.72 Total: 13.64 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 4.24 Total: 3.81 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -2.87 Total: -91.08 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.05 Total: -26.21 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.22 kcal Total: -60.25 2.63 -57.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280019.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.693 kcal (2) G-P(sol) polarization free energy of solvation -60.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds