Wall clock time and date at job start Mon Mar 30 2020 03:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00392 * 2 1 4 4 H 1.48501 * 109.47092 * 265.39150 * 3 2 1 5 5 H 1.48508 * 109.47176 * 25.38774 * 3 2 1 6 6 H 1.48503 * 109.47395 * 145.38820 * 3 2 1 7 7 C 1.37881 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99863 * 0.66302 * 7 2 1 9 9 C 1.50703 * 120.00052 * 180.67052 * 7 2 1 10 10 H 1.08999 * 110.85185 * 335.16373 * 9 7 2 11 11 C 1.54621 * 110.97179 * 98.95685 * 9 7 2 12 12 C 1.51283 * 104.19674 * 142.95287 * 11 9 7 13 13 O 1.21298 * 124.94233 * 163.70784 * 12 11 9 14 14 N 1.34423 * 110.11226 * 343.74881 * 12 11 9 15 15 C 1.40759 * 124.34816 * 179.57354 * 14 12 11 16 16 C 1.40255 * 126.08122 * 179.66727 * 15 14 12 17 17 N 1.30828 * 108.33213 * 179.81275 * 16 15 14 18 18 N 1.40065 * 108.37231 * 0.43893 * 17 16 15 19 19 H 0.97004 * 126.05103 * 179.71585 * 18 17 16 20 20 C 1.35752 * 126.08074 * 359.96782 * 15 14 12 21 21 C 1.46763 * 111.29954 * 359.59148 * 14 12 11 22 22 H 0.96996 * 119.99685 * 0.02562 * 1 2 3 23 23 H 1.09000 * 110.48623 * 261.63189 * 11 9 7 24 24 H 1.09002 * 110.48687 * 24.27343 * 11 9 7 25 25 H 1.07998 * 125.82989 * 359.97438 * 16 15 14 26 26 H 1.08004 * 126.21832 * 359.97438 * 20 15 14 27 27 H 1.09008 * 110.24061 * 258.01474 * 21 14 12 28 28 H 1.08995 * 110.24507 * 136.02242 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5942 1.9900 -1.3956 5 1 1.4014 2.6788 0.6003 6 1 3.4947 1.4701 0.7953 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 -0.0099 9 6 3.5115 -1.1942 0.0158 10 1 3.9038 -0.2676 -0.4031 11 6 4.0504 -1.4267 1.4463 12 6 5.2783 -2.2872 1.2449 13 8 6.1465 -2.4637 2.0734 14 7 5.2675 -2.8270 0.0138 15 6 6.2734 -3.6721 -0.4916 16 6 6.2959 -4.2596 -1.7650 17 7 7.3880 -4.9722 -1.8701 18 7 8.0967 -4.8743 -0.6660 19 1 8.9417 -5.3058 -0.4642 20 6 7.3913 -4.0682 0.1689 21 6 4.0726 -2.4217 -0.7356 22 1 -0.4849 0.8400 -0.0004 23 1 4.3211 -0.4786 1.9108 24 1 3.3116 -1.9520 2.0516 25 1 5.5419 -4.1414 -2.5291 26 1 7.6695 -3.7919 1.1753 27 1 3.3393 -3.2283 -0.7412 28 1 4.3418 -2.1488 -1.7559 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261280020.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:36 Heat of formation + Delta-G solvation = 20.613940 kcal Electronic energy + Delta-G solvation = -14642.001073 eV Core-core repulsion = 12079.719846 eV Total energy + Delta-G solvation = -2562.281227 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.41902 -40.90140 -37.59226 -35.17055 -33.46540 -32.28875 -29.86552 -28.70995 -26.55706 -23.65596 -22.55970 -21.53308 -20.26871 -19.36811 -18.89302 -17.38162 -16.89518 -16.05103 -16.00790 -15.54161 -15.39213 -14.87840 -14.69547 -14.39105 -14.01870 -13.68600 -12.90606 -12.64301 -12.51820 -12.04559 -11.94186 -11.82482 -11.49375 -11.07637 -10.81493 -10.66766 -10.60347 -8.68848 -8.25595 -6.32120 0.74614 1.24217 1.43021 1.46933 1.54846 1.68397 2.10295 2.27546 2.39591 3.07455 3.51942 3.87016 3.97984 4.18703 4.27850 4.40584 4.52017 4.60783 4.84338 4.88045 5.14202 5.21313 5.32763 5.60313 5.85630 6.06024 6.31194 6.32299 6.61337 6.76599 7.16647 7.34981 8.89643 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.047591 B = 0.007612 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.211073 B = 3677.590255 C = 3926.840300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.023 3.977 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.246 1.246 7 C -0.508 4.508 8 H 0.048 0.952 9 C 0.010 3.990 10 H 0.058 0.942 11 C -0.150 4.150 12 C 0.511 3.489 13 O -0.569 6.569 14 N -0.532 5.532 15 C -0.014 4.014 16 C 0.044 3.956 17 N -0.295 5.295 18 N -0.461 5.461 19 H 0.458 0.542 20 C 0.037 3.963 21 C 0.116 3.884 22 H 0.267 0.733 23 H 0.092 0.908 24 H 0.100 0.900 25 H 0.209 0.791 26 H 0.190 0.810 27 H 0.076 0.924 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.185 -4.955 -2.245 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.170 1.170 7 C -0.546 4.546 8 H 0.066 0.934 9 C -0.009 4.009 10 H 0.076 0.924 11 C -0.190 4.190 12 C 0.302 3.698 13 O -0.449 6.449 14 N -0.257 5.257 15 C -0.117 4.117 16 C -0.144 4.144 17 N -0.118 5.118 18 N -0.175 5.175 19 H 0.306 0.694 20 C -0.112 4.112 21 C -0.005 4.005 22 H 0.077 0.923 23 H 0.110 0.890 24 H 0.119 0.881 25 H 0.226 0.774 26 H 0.207 0.793 27 H 0.094 0.906 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.157 -5.707 -2.603 15.484 hybrid contribution -0.372 1.108 0.816 1.426 sum 13.785 -4.599 -1.786 14.641 Atomic orbital electron populations 1.70018 1.08246 1.28283 1.51429 1.25845 0.95298 1.02754 0.93705 0.85917 0.79449 0.79030 0.79644 1.18779 1.21943 1.16966 1.20970 0.89419 0.93538 1.50624 0.93386 1.20023 0.94976 0.94985 0.90952 0.92385 1.22726 0.94259 0.99790 1.02231 1.21491 0.87564 0.80004 0.80725 1.90539 1.42457 1.64491 1.47462 1.45470 1.20884 1.44437 1.14946 1.18058 0.93533 1.04014 0.96072 1.24033 0.97519 0.96550 0.96316 1.77183 1.07043 1.23417 1.04207 1.46112 1.21691 1.39951 1.09770 0.69392 1.22561 0.93420 0.97010 0.98224 1.22453 0.83663 0.98052 0.96332 0.92348 0.88992 0.88137 0.77447 0.79333 0.90585 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.10 13.96 21.45 0.30 -53.80 15 2 C 0.02 1.20 5.47 84.66 0.46 1.66 15 3 Si 0.94 39.79 26.93 68.60 1.85 41.64 15 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 15 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 15 6 H -0.25 -9.66 6.92 99.48 0.69 -8.97 15 7 C -0.51 -25.20 8.82 25.60 0.23 -24.97 15 8 H 0.05 2.64 7.94 -2.91 -0.02 2.62 15 9 C 0.01 0.41 2.65 -10.49 -0.03 0.38 15 10 H 0.06 2.26 5.59 -2.39 -0.01 2.25 15 11 C -0.15 -5.74 6.41 30.59 0.20 -5.55 15 12 C 0.51 19.35 7.98 87.90 0.70 20.05 15 13 O -0.57 -23.12 15.64 -3.08 -0.05 -23.17 15 14 N -0.53 -18.09 3.16 -628.38 -1.99 -20.08 15 15 C -0.01 -0.43 6.80 37.62 0.26 -0.18 15 16 C 0.04 1.15 11.53 85.33 0.98 2.14 15 17 N -0.30 -7.70 12.69 -56.77 -0.72 -8.42 15 18 N -0.46 -10.27 7.40 -56.81 -0.42 -10.69 15 19 H 0.46 6.56 8.96 -213.34 -1.91 4.65 15 20 C 0.04 1.01 11.18 83.50 0.93 1.95 15 21 C 0.12 3.91 6.48 86.83 0.56 4.47 15 22 H 0.27 14.51 8.31 -92.71 -0.77 13.74 15 23 H 0.09 3.41 8.11 -2.39 -0.02 3.39 15 24 H 0.10 3.98 7.89 -2.39 -0.02 3.96 15 25 H 0.21 4.35 8.06 -2.91 -0.02 4.32 15 26 H 0.19 5.21 6.51 -2.91 -0.02 5.19 15 27 H 0.08 2.60 7.80 -2.38 -0.02 2.58 15 28 H 0.10 2.76 8.13 -2.39 -0.02 2.74 15 Total: -1.00 -62.61 245.53 2.53 -60.08 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -0.74 Total: 14.49 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 4.29 Total: -0.05 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -2.83 Total: -92.99 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.05 Total: -23.17 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 1.85 Total: 41.64 kcal Total: -62.61 2.53 -60.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280020.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.698 kcal (2) G-P(sol) polarization free energy of solvation -62.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds