Wall clock time and date at job start Mon Mar 30 2020 03:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48502 * 109.47464 * 239.99673 * 3 2 1 5 5 H 1.48502 * 109.46951 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47594 * 119.99242 * 3 2 1 7 7 C 1.37880 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00284 * 185.31499 * 7 2 1 9 9 C 1.50697 * 119.99838 * 5.32399 * 7 2 1 10 10 H 1.08998 * 109.47146 * 325.98704 * 9 7 2 11 11 C 1.52997 * 109.47112 * 205.98481 * 9 7 2 12 12 N 1.46906 * 109.46955 * 65.41652 * 11 9 7 13 13 C 1.50695 * 109.47200 * 85.98686 * 9 7 2 14 14 C 1.34679 * 125.84867 * 34.79216 * 13 9 7 15 15 N 1.37206 * 106.91379 * 179.87456 * 14 13 9 16 16 C 1.38777 * 145.44485 * 179.97438 * 15 14 13 17 17 C 1.32677 * 107.71655 * 180.33912 * 16 15 14 18 18 O 1.35238 * 108.81281 * 0.02562 * 17 16 15 19 19 C 1.35047 * 108.73196 * 359.97438 * 18 17 16 20 20 N 1.31490 * 144.36789 * 179.97438 * 19 18 17 21 21 H 0.96996 * 120.00228 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47601 * 185.41890 * 11 9 7 23 23 H 1.08998 * 109.47438 * 305.42146 * 11 9 7 24 24 H 1.00902 * 111.00127 * 174.08377 * 12 11 9 25 25 H 1.00893 * 111.00054 * 298.03291 * 12 11 9 26 26 H 1.07994 * 126.54187 * 359.83816 * 14 13 9 27 27 H 1.07993 * 126.14314 * 0.34314 * 16 15 14 28 28 H 1.07997 * 125.59816 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0811 -1.1960 0.0872 9 6 1.2560 -2.4964 -0.1200 10 1 0.2932 -2.4100 0.3836 11 6 2.0724 -3.6158 0.5290 12 7 2.1781 -3.3705 1.9735 13 6 1.0344 -2.8155 -1.5760 14 6 1.8846 -2.5373 -2.5827 15 7 1.3010 -2.9963 -3.7365 16 6 1.4359 -3.1284 -5.1114 17 6 0.3457 -3.7310 -5.5680 18 8 -0.4796 -3.9865 -4.5275 19 6 0.1003 -3.5376 -3.3936 20 7 -0.0460 -3.4211 -2.0920 21 1 -0.4850 0.8400 -0.0004 22 1 1.5780 -4.5721 0.3580 23 1 3.0700 -3.6391 0.0905 24 1 2.6292 -4.1435 2.4395 25 1 2.6618 -2.5047 2.1588 26 1 2.8427 -2.0461 -2.4980 27 1 2.2772 -2.7997 -5.7033 28 1 0.1494 -3.9772 -6.6011 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261282759.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:45 Heat of formation + Delta-G solvation = 69.288459 kcal Electronic energy + Delta-G solvation = -14804.311149 eV Core-core repulsion = 12244.140607 eV Total energy + Delta-G solvation = -2560.170541 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.77691 -40.83173 -36.93604 -35.08179 -34.19274 -31.42998 -30.57558 -28.46919 -26.31796 -23.68425 -22.96392 -22.79086 -20.99598 -18.61896 -18.08242 -17.96425 -17.07101 -16.62033 -16.58414 -16.00513 -15.31001 -14.75591 -14.42694 -14.24682 -14.10764 -13.46350 -13.29196 -12.89416 -12.58979 -12.45037 -12.30795 -11.42386 -11.18801 -10.91908 -10.49032 -9.44032 -9.26603 -9.02192 -8.06176 -6.19426 0.55438 1.11879 1.37563 1.45677 1.47145 1.54368 1.88841 2.20633 2.46907 3.22923 3.54583 3.82459 4.06410 4.24896 4.40078 4.65335 4.69583 4.87405 4.91110 5.13147 5.24635 5.32508 5.69288 5.81324 6.04673 6.23631 6.49030 6.56897 6.95105 7.00442 7.11575 7.49724 9.02981 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.010160 C = 0.008409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.459054 B = 2755.368410 C = 3328.831162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.296 1.296 6 H -0.262 1.262 7 C -0.509 4.509 8 H 0.068 0.932 9 C 0.113 3.887 10 H 0.025 0.975 11 C 0.095 3.905 12 N -0.848 5.848 13 C 0.084 3.916 14 C -0.066 4.066 15 N -0.440 5.440 16 C -0.057 4.057 17 C -0.004 4.004 18 O -0.190 6.190 19 C 0.293 3.707 20 N -0.516 5.516 21 H 0.257 0.743 22 H 0.042 0.958 23 H 0.023 0.977 24 H 0.341 0.659 25 H 0.348 0.652 26 H 0.191 0.809 27 H 0.232 0.768 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 -5.399 -11.378 14.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.181 4.181 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.222 1.222 6 H -0.186 1.186 7 C -0.547 4.547 8 H 0.086 0.914 9 C 0.093 3.907 10 H 0.044 0.956 11 C -0.037 4.037 12 N -0.379 5.379 13 C -0.044 4.044 14 C -0.193 4.193 15 N -0.128 5.128 16 C -0.172 4.172 17 C -0.069 4.069 18 O -0.085 6.085 19 C 0.000 4.000 20 N -0.253 5.253 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.041 0.959 24 H 0.154 0.846 25 H 0.161 0.839 26 H 0.208 0.792 27 H 0.248 0.752 28 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges 5.211 -5.604 -11.080 13.465 hybrid contribution 1.631 1.280 -0.563 2.148 sum 6.842 -4.323 -11.642 14.179 Atomic orbital electron populations 1.70172 1.07988 1.27128 1.50365 1.25825 0.95234 1.02777 0.94295 0.85673 0.78238 0.78845 0.79235 1.19364 1.22244 1.18644 1.21084 0.93188 0.90147 1.50294 0.91371 1.17200 0.96640 0.93330 0.83549 0.95638 1.21491 0.97063 0.96700 0.88418 1.58464 1.61752 1.07927 1.09783 1.21986 0.87414 0.96062 0.98912 1.21967 1.03784 1.12295 0.81258 1.44634 1.17647 1.42746 1.07803 1.23082 1.05053 1.08936 0.80096 1.25272 0.87178 1.00877 0.93532 1.84596 1.42468 1.69662 1.11810 1.22641 0.84953 1.02906 0.89469 1.70253 1.28529 1.26370 1.00130 0.93386 0.93978 0.95866 0.84646 0.83854 0.79195 0.75171 0.69516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.18 12.91 21.45 0.28 -55.90 15 2 C 0.02 1.03 5.45 84.66 0.46 1.49 15 3 Si 0.95 42.79 29.54 68.60 2.03 44.82 15 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 5 H -0.30 -13.57 7.11 99.48 0.71 -12.86 15 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 15 7 C -0.51 -26.75 6.74 25.60 0.17 -26.57 15 8 H 0.07 3.33 7.82 -2.91 -0.02 3.30 15 9 C 0.11 5.97 2.45 -12.29 -0.03 5.94 15 10 H 0.03 1.61 7.50 -2.39 -0.02 1.59 15 11 C 0.09 4.14 6.19 86.30 0.53 4.67 15 12 N -0.85 -33.53 9.57 -186.72 -1.79 -35.32 15 13 C 0.08 4.31 6.01 41.38 0.25 4.56 15 14 C -0.07 -2.94 11.22 83.04 0.93 -2.01 15 15 N -0.44 -16.99 3.57 -470.03 -1.68 -18.67 15 16 C -0.06 -1.39 11.95 82.42 0.99 -0.40 15 17 C 0.00 -0.07 12.01 66.65 0.80 0.73 15 18 O -0.19 -6.53 10.77 -19.43 -0.21 -6.74 15 19 C 0.29 13.03 9.78 179.63 1.76 14.79 15 20 N -0.52 -27.31 11.29 -301.91 -3.41 -30.72 15 21 H 0.26 15.13 8.31 -92.71 -0.77 14.36 15 22 H 0.04 1.84 8.14 -2.39 -0.02 1.82 15 23 H 0.02 0.94 8.14 -2.39 -0.02 0.92 15 24 H 0.34 10.74 9.08 -89.69 -0.81 9.92 15 25 H 0.35 13.75 8.25 -89.70 -0.74 13.01 15 26 H 0.19 7.61 7.93 -2.91 -0.02 7.58 15 27 H 0.23 3.19 8.06 -2.91 -0.02 3.17 15 28 H 0.29 1.57 8.06 -2.91 -0.02 1.54 15 Total: -1.00 -76.83 252.06 0.73 -76.10 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.35 Total: 23.22 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 5.86 Total: 3.20 kcal Atomic # 7 Polarization: -134.00 SS G_CDS: -6.59 Total: -140.60 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.21 Total: -6.74 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -76.83 0.73 -76.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282759.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.393 kcal (2) G-P(sol) polarization free energy of solvation -76.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds