Wall clock time and date at job start Mon Mar 30 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99648 * 2 1 4 4 H 1.48504 * 109.46963 * 269.99911 * 3 2 1 5 5 H 1.48504 * 109.47369 * 29.99237 * 3 2 1 6 6 H 1.48496 * 109.47436 * 149.99775 * 3 2 1 7 7 C 1.37869 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00093 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00430 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47140 * 300.00098 * 9 7 2 11 11 C 1.53006 * 109.46962 * 60.00060 * 9 7 2 12 12 N 1.46897 * 109.47056 * 185.00332 * 11 9 7 13 13 C 1.50698 * 109.47444 * 179.97438 * 9 7 2 14 14 C 1.34675 * 125.84708 * 325.00221 * 13 9 7 15 15 N 1.37210 * 106.91209 * 179.73761 * 14 13 9 16 16 C 1.38775 * 145.44234 * 180.02562 * 15 14 13 17 17 C 1.32676 * 107.71668 * 179.97438 * 16 15 14 18 18 O 1.35241 * 108.81181 * 359.97438 * 17 16 15 19 19 C 1.35054 * 108.72801 * 0.02562 * 18 17 16 20 20 N 1.31491 * 144.36356 * 179.97438 * 19 18 17 21 21 H 0.96998 * 120.00894 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.46700 * 304.99928 * 11 9 7 23 23 H 1.08993 * 109.46965 * 64.99941 * 11 9 7 24 24 H 1.00903 * 110.99915 * 180.02562 * 12 11 9 25 25 H 1.00902 * 111.00100 * 303.95124 * 12 11 9 26 26 H 1.08004 * 126.53933 * 359.71568 * 14 13 9 27 27 H 1.08003 * 126.14216 * 359.97438 * 16 15 14 28 28 H 1.07997 * 125.59354 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5465 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 0.3720 -2.5805 -1.2491 12 7 -0.4512 -3.7957 -1.1903 13 6 2.2305 -3.6445 0.0005 14 6 3.4227 -3.6628 -0.6256 15 7 3.9915 -4.8840 -0.3653 16 6 5.0946 -5.6992 -0.5761 17 6 4.8809 -6.8413 0.0644 18 8 3.6768 -6.7790 0.6770 19 6 3.1202 -5.5761 0.4180 20 7 2.0664 -4.8185 0.6290 21 1 -0.4851 0.8399 -0.0004 22 1 -0.2755 -1.7048 -1.2954 23 1 1.0041 -2.6123 -2.1365 24 1 -1.0410 -3.8726 -2.0054 25 1 0.1242 -4.6174 -1.0819 26 1 3.8494 -2.8680 -1.2195 27 1 5.9699 -5.4489 -1.1572 28 1 5.5575 -7.6826 0.0921 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261282770.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:49 Heat of formation + Delta-G solvation = 98.244021 kcal Electronic energy + Delta-G solvation = -14782.323152 eV Core-core repulsion = 12223.408218 eV Total energy + Delta-G solvation = -2558.914934 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.53233 -39.52870 -35.20621 -33.72674 -32.12175 -29.79683 -29.35234 -26.97860 -23.96559 -22.53543 -21.64537 -21.48325 -19.07012 -17.22638 -16.83544 -16.21994 -15.63225 -15.30008 -14.69811 -14.36472 -13.50546 -13.32046 -13.18400 -12.85169 -12.68104 -11.82945 -11.25771 -11.05008 -10.77000 -10.50084 -10.30490 -9.89434 -9.52038 -9.02999 -8.46124 -8.21095 -7.59819 -7.46507 -6.02748 -4.10669 1.58298 2.34412 2.64877 3.01019 3.28851 3.36546 3.39142 3.69629 4.39934 4.61865 4.78013 5.25973 5.30581 5.35194 5.83790 5.91126 6.27405 6.40288 6.64015 6.77888 6.97968 7.39522 7.54539 7.69334 7.88123 7.95857 8.25581 8.36539 8.52777 8.62996 8.92773 9.53661 11.03072 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.037502 B = 0.008556 C = 0.007377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.457592 B = 3271.960786 C = 3794.443330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.065 3.935 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.060 0.940 9 C 0.125 3.875 10 H 0.058 0.942 11 C 0.073 3.927 12 N -0.850 5.850 13 C 0.102 3.898 14 C -0.072 4.072 15 N -0.442 5.442 16 C -0.034 4.034 17 C -0.028 4.028 18 O -0.177 6.177 19 C 0.315 3.685 20 N -0.458 5.458 21 H 0.263 0.737 22 H 0.110 0.890 23 H -0.005 1.005 24 H 0.318 0.682 25 H 0.326 0.674 26 H 0.181 0.819 27 H 0.188 0.812 28 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.550 -9.650 -3.697 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.105 3.895 10 H 0.076 0.924 11 C -0.058 4.058 12 N -0.378 5.378 13 C -0.024 4.024 14 C -0.197 4.197 15 N -0.130 5.130 16 C -0.151 4.151 17 C -0.095 4.095 18 O -0.073 6.073 19 C 0.023 3.977 20 N -0.193 5.193 21 H 0.073 0.927 22 H 0.128 0.872 23 H 0.013 0.987 24 H 0.128 0.872 25 H 0.137 0.863 26 H 0.198 0.802 27 H 0.205 0.795 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 8.446 -9.534 -2.524 12.985 hybrid contribution 2.067 0.779 -1.480 2.659 sum 10.514 -8.756 -4.005 14.256 Atomic orbital electron populations 1.69888 1.05760 1.26709 1.49538 1.24952 0.94900 0.99062 0.94862 0.86540 0.79841 0.83285 0.78020 1.20693 1.21099 1.19935 1.21065 0.92941 0.89570 1.51900 0.92175 1.17378 0.89813 0.86101 0.96251 0.92449 1.22063 0.95429 0.92640 0.95638 1.58910 1.27479 1.05881 1.45516 1.21949 0.94888 0.92107 0.93506 1.22109 0.97623 0.86744 1.13213 1.44537 1.15253 1.14643 1.38589 1.22150 0.94462 0.90847 1.07648 1.23872 0.86821 1.00195 0.98641 1.84581 1.29723 1.28856 1.64102 1.22676 0.91575 0.84626 0.98848 1.70575 1.18385 1.03147 1.27197 0.92698 0.87184 0.98695 0.87219 0.86281 0.80187 0.79518 0.75848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.72 11.29 55.43 0.63 -24.09 15 2 C 0.06 1.74 5.29 -17.82 -0.09 1.65 15 3 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.52 -13.82 8.24 -34.45 -0.28 -14.11 15 8 H 0.06 1.57 6.81 -52.49 -0.36 1.21 15 9 C 0.12 3.24 2.44 -92.92 -0.23 3.01 15 10 H 0.06 1.70 8.14 -51.93 -0.42 1.27 15 11 C 0.07 1.77 6.07 -3.82 -0.02 1.75 15 12 N -0.85 -18.66 9.62 -10.37 -0.10 -18.76 15 13 C 0.10 2.40 5.16 -82.83 -0.43 1.97 15 14 C -0.07 -1.48 10.90 -16.41 -0.18 -1.66 15 15 N -0.44 -8.01 3.57 -64.77 -0.23 -8.24 15 16 C -0.03 -0.42 11.95 -16.30 -0.19 -0.62 15 17 C -0.03 -0.30 12.01 28.84 0.35 0.05 15 18 O -0.18 -2.88 10.77 0.94 0.01 -2.87 15 19 C 0.31 6.33 9.78 -88.59 -0.87 5.47 15 20 N -0.46 -10.62 10.91 -10.87 -0.12 -10.74 15 21 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 22 H 0.11 2.96 5.95 -51.93 -0.31 2.65 15 23 H -0.01 -0.12 8.14 -51.93 -0.42 -0.55 15 24 H 0.32 6.03 9.08 -39.29 -0.36 5.68 15 25 H 0.33 7.07 7.77 -39.29 -0.31 6.77 15 26 H 0.18 3.46 7.65 -52.48 -0.40 3.06 15 27 H 0.19 1.53 8.06 -52.48 -0.42 1.10 15 28 H 0.23 1.08 8.06 -52.49 -0.42 0.65 15 LS Contribution 246.84 15.07 3.72 3.72 Total: -1.00 -31.73 246.84 -5.62 -37.35 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -2.56 Total: 10.45 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.95 Total: -2.49 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.18 Total: -61.83 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: 0.01 Total: -2.87 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.73 -5.62 -37.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282770.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.598 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds