Wall clock time and date at job start Mon Mar 30 2020 03:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32675 * 125.59376 * 2 1 4 4 N 1.38779 * 107.71806 * 179.97438 * 3 2 1 5 5 C 1.37206 * 145.44798 * 180.02562 * 4 3 2 6 6 C 1.34680 * 106.91416 * 180.02562 * 5 4 3 7 7 C 1.50698 * 125.84413 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47556 * 4.99694 * 7 6 5 9 9 N 1.46905 * 109.46910 * 244.99733 * 7 6 5 10 10 C 1.50700 * 109.47079 * 124.99890 * 7 6 5 11 11 H 1.08003 * 120.00031 * 359.97438 * 10 7 6 12 12 C 1.37877 * 119.99851 * 179.97438 * 10 7 6 13 13 N 1.31513 * 120.00267 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99704 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.47064 * 60.00194 * 14 12 10 16 16 H 1.48506 * 109.47000 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47398 * 300.00145 * 14 12 10 18 18 N 1.34170 * 108.30346 * 0.22794 * 6 5 4 19 19 C 1.31489 * 109.33212 * 359.61860 * 18 6 5 20 20 O 1.35051 * 144.36057 * 180.02562 * 19 18 6 21 21 H 1.09004 * 109.47181 * 89.99602 * 1 2 3 22 22 H 1.09009 * 109.47119 * 209.99574 * 1 2 3 23 23 H 1.08994 * 109.47243 * 329.99260 * 1 2 3 24 24 H 1.08001 * 126.13812 * 359.96763 * 3 2 1 25 25 H 1.07999 * 126.54535 * 0.02562 * 5 4 3 26 26 H 1.00901 * 110.99869 * 300.00472 * 9 7 6 27 27 H 1.00896 * 110.99543 * 63.95595 * 9 7 6 28 28 H 0.97003 * 119.99846 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2791 1.0789 0.0000 4 7 3.5999 0.6529 0.0006 5 6 4.9143 1.0466 0.0013 6 6 5.6594 -0.0753 0.0009 7 6 7.1652 -0.1345 0.0009 8 1 7.5686 0.8741 0.0908 9 7 7.6315 -0.7383 -1.2546 10 6 7.6351 -0.9690 1.1645 11 1 6.9153 -1.4118 1.8370 12 6 8.9839 -1.1672 1.3705 13 7 9.8604 -0.6285 0.5513 14 14 9.5664 -2.2010 2.8132 15 1 9.0163 -3.5750 2.6917 16 1 11.0502 -2.2605 2.8125 17 1 9.0957 -1.5898 4.0821 18 7 4.8314 -1.1310 -0.0051 19 6 3.5865 -0.7079 -0.0002 20 8 2.2941 -1.0997 -0.0006 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.9406 2.1044 -0.0005 25 1 5.2814 2.0623 0.0021 26 1 7.2707 -1.6746 -1.3613 27 1 7.3844 -0.1632 -2.0459 28 1 10.8093 -0.7683 0.6960 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261289112.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:54 Heat of formation + Delta-G solvation = 100.249703 kcal Electronic energy + Delta-G solvation = -14521.116893 eV Core-core repulsion = 11962.288931 eV Total energy + Delta-G solvation = -2558.827961 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.58569 -39.60020 -34.72148 -33.74080 -31.88620 -31.01638 -28.77905 -26.80397 -25.48455 -22.75814 -21.78285 -21.33248 -19.34120 -17.06500 -16.96016 -16.32585 -15.62046 -14.74813 -14.28674 -13.96051 -13.85966 -13.61297 -13.02017 -12.99501 -12.86002 -12.35567 -12.30106 -11.19058 -11.03554 -10.68558 -10.59203 -9.83846 -9.51061 -9.01314 -8.29329 -8.15763 -7.75538 -7.00668 -5.75908 -3.86927 1.48537 2.22085 2.58033 2.92111 3.46184 3.49398 3.52853 3.66031 4.38742 4.61399 4.73454 4.85323 5.12080 5.18959 5.24596 5.50468 5.59735 5.86821 6.07244 6.39328 6.47321 6.56037 7.29404 7.38466 7.68056 8.07608 8.28457 8.48820 8.75635 9.15613 9.27311 9.79538 11.29425 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.052363 B = 0.006884 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.596308 B = 4066.479192 C = 4316.643070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.001 4.001 3 C -0.036 4.036 4 N -0.438 5.438 5 C -0.091 4.091 6 C 0.071 3.929 7 C 0.297 3.703 8 H 0.056 0.944 9 N -0.802 5.802 10 C -0.519 4.519 11 H 0.056 0.944 12 C 0.081 3.919 13 N -0.853 5.853 14 Si 0.886 3.114 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.280 1.280 18 N -0.442 5.442 19 C 0.319 3.681 20 O -0.175 6.175 21 H 0.086 0.914 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.188 0.812 25 H 0.177 0.823 26 H 0.326 0.674 27 H 0.295 0.705 28 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.052 5.134 -2.082 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.052 4.052 3 C -0.153 4.153 4 N -0.126 5.126 5 C -0.218 4.218 6 C -0.060 4.060 7 C 0.186 3.814 8 H 0.074 0.926 9 N -0.326 5.326 10 C -0.558 4.558 11 H 0.074 0.926 12 C -0.125 4.125 13 N -0.488 5.488 14 Si 0.714 3.286 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.205 1.205 18 N -0.177 5.177 19 C 0.027 3.973 20 O -0.071 6.071 21 H 0.105 0.895 22 H 0.103 0.897 23 H 0.112 0.888 24 H 0.205 0.795 25 H 0.194 0.806 26 H 0.138 0.862 27 H 0.105 0.895 28 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.970 4.370 -1.838 16.659 hybrid contribution -1.044 0.389 0.597 1.264 sum -17.015 4.759 -1.241 17.711 Atomic orbital electron populations 1.20315 0.83252 1.04720 1.04082 1.22177 0.94609 0.82188 1.06187 1.21820 0.80663 1.00567 1.12246 1.44454 1.05489 1.10216 1.52434 1.22119 0.77765 1.01566 1.20320 1.23462 0.99909 0.84891 0.97726 1.17786 0.76400 0.97279 0.89964 0.92605 1.59297 1.65899 1.04965 1.02488 1.20788 0.91517 1.33570 1.09967 0.92613 1.24922 0.96783 0.95246 0.95505 1.70088 1.00922 1.42540 1.35288 0.86786 0.77237 0.81335 0.83224 1.20302 1.21460 1.20542 1.70550 0.91588 1.30730 1.24864 1.22736 0.86911 0.79144 1.08520 1.84533 1.11080 1.31164 1.80352 0.89504 0.89700 0.88800 0.79538 0.80615 0.86163 0.89511 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.40 36.00 0.37 -0.06 15 2 C 0.00 -0.02 7.27 -36.20 -0.26 -0.28 15 3 C -0.04 -0.47 11.83 -16.29 -0.19 -0.67 15 4 N -0.44 -8.04 3.57 -64.77 -0.23 -8.27 15 5 C -0.09 -1.80 11.92 -16.41 -0.20 -2.00 15 6 C 0.07 1.65 5.82 -82.83 -0.48 1.17 15 7 C 0.30 7.68 3.09 -70.01 -0.22 7.46 15 8 H 0.06 1.50 8.10 -51.93 -0.42 1.08 15 9 N -0.80 -19.92 8.52 -6.65 -0.06 -19.97 15 10 C -0.52 -15.01 8.69 -34.44 -0.30 -15.31 15 11 H 0.06 1.67 7.74 -52.48 -0.41 1.26 15 12 C 0.08 2.34 5.39 -17.82 -0.10 2.25 15 13 N -0.85 -25.30 12.77 55.43 0.71 -24.59 15 14 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 15 15 H -0.28 -7.01 7.11 56.52 0.40 -6.61 15 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 18 N -0.44 -10.61 11.26 -10.87 -0.12 -10.73 15 19 C 0.32 6.67 9.78 -88.59 -0.87 5.81 15 20 O -0.18 -3.07 10.77 0.96 0.01 -3.06 15 21 H 0.09 0.44 8.14 -51.93 -0.42 0.01 15 22 H 0.08 0.52 8.14 -51.92 -0.42 0.09 15 23 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 15 24 H 0.19 1.62 8.06 -52.49 -0.42 1.20 15 25 H 0.18 2.93 8.06 -52.49 -0.42 2.51 15 26 H 0.33 8.19 8.98 -39.29 -0.35 7.84 15 27 H 0.30 6.49 9.06 -39.29 -0.36 6.13 15 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 LS Contribution 254.69 15.07 3.84 3.84 Total: -1.00 -34.15 254.69 -5.90 -40.05 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -2.78 Total: 7.13 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.24 Total: -1.63 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: 0.30 Total: -63.56 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: 0.01 Total: -3.06 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -34.15 -5.90 -40.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289112.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.297 kcal (2) G-P(sol) polarization free energy of solvation -34.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds