Wall clock time and date at job start Mon Mar 30 2020 03:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32675 * 125.59376 * 2 1 4 4 N 1.38779 * 107.71806 * 179.97438 * 3 2 1 5 5 C 1.37206 * 145.44798 * 180.02562 * 4 3 2 6 6 C 1.34680 * 106.91416 * 180.02562 * 5 4 3 7 7 C 1.50698 * 125.84413 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47556 * 4.99694 * 7 6 5 9 9 N 1.46905 * 109.46910 * 244.99733 * 7 6 5 10 10 C 1.50700 * 109.47079 * 124.99890 * 7 6 5 11 11 H 1.08003 * 120.00031 * 359.97438 * 10 7 6 12 12 C 1.37877 * 119.99851 * 179.97438 * 10 7 6 13 13 N 1.31513 * 120.00267 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99704 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.47064 * 60.00194 * 14 12 10 16 16 H 1.48506 * 109.47000 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47398 * 300.00145 * 14 12 10 18 18 N 1.34170 * 108.30346 * 0.22794 * 6 5 4 19 19 C 1.31489 * 109.33212 * 359.61860 * 18 6 5 20 20 O 1.35051 * 144.36057 * 180.02562 * 19 18 6 21 21 H 1.09004 * 109.47181 * 89.99602 * 1 2 3 22 22 H 1.09009 * 109.47119 * 209.99574 * 1 2 3 23 23 H 1.08994 * 109.47243 * 329.99260 * 1 2 3 24 24 H 1.08001 * 126.13812 * 359.96763 * 3 2 1 25 25 H 1.07999 * 126.54535 * 0.02562 * 5 4 3 26 26 H 1.00901 * 110.99869 * 300.00472 * 9 7 6 27 27 H 1.00896 * 110.99543 * 63.95595 * 9 7 6 28 28 H 0.97003 * 119.99846 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2791 1.0789 0.0000 4 7 3.5999 0.6529 0.0006 5 6 4.9143 1.0466 0.0013 6 6 5.6594 -0.0753 0.0009 7 6 7.1652 -0.1345 0.0009 8 1 7.5686 0.8741 0.0908 9 7 7.6315 -0.7383 -1.2546 10 6 7.6351 -0.9690 1.1645 11 1 6.9153 -1.4118 1.8370 12 6 8.9839 -1.1672 1.3705 13 7 9.8604 -0.6285 0.5513 14 14 9.5664 -2.2010 2.8132 15 1 9.0163 -3.5750 2.6917 16 1 11.0502 -2.2605 2.8125 17 1 9.0957 -1.5898 4.0821 18 7 4.8314 -1.1310 -0.0051 19 6 3.5865 -0.7079 -0.0002 20 8 2.2941 -1.0997 -0.0006 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.9406 2.1044 -0.0005 25 1 5.2814 2.0623 0.0021 26 1 7.2707 -1.6746 -1.3613 27 1 7.3844 -0.1632 -2.0459 28 1 10.8093 -0.7683 0.6960 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261289112.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:54 Heat of formation + Delta-G solvation = 73.120994 kcal Electronic energy + Delta-G solvation = -14522.293282 eV Core-core repulsion = 11962.288931 eV Total energy + Delta-G solvation = -2560.004350 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.94812 -41.04986 -36.50190 -35.21048 -33.48124 -32.57901 -30.31867 -28.37733 -27.14524 -24.42430 -23.17348 -22.69485 -21.03789 -18.67912 -18.30709 -18.03185 -17.19438 -16.57913 -15.90372 -15.63864 -15.09812 -14.78006 -14.40022 -14.29541 -14.24041 -13.80132 -13.24873 -13.11093 -12.76258 -12.68962 -12.31551 -11.85383 -11.32324 -10.97860 -10.49770 -9.50501 -9.29060 -8.90530 -7.95144 -6.12729 0.34451 0.92303 1.19847 1.43939 1.46681 1.53709 1.68027 1.98414 2.52018 3.26454 3.31409 3.59814 3.97113 4.10398 4.44194 4.48293 4.57161 4.60042 4.72013 4.97887 5.07834 5.22673 5.40345 5.75544 5.81960 6.20015 6.28764 6.65753 6.90994 7.06871 7.30008 7.56864 9.09149 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.052363 B = 0.006884 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.596308 B = 4066.479192 C = 4316.643070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.010 3.990 3 C -0.053 4.053 4 N -0.433 5.433 5 C -0.073 4.073 6 C 0.033 3.967 7 C 0.301 3.699 8 H 0.041 0.959 9 N -0.809 5.809 10 C -0.536 4.536 11 H 0.035 0.965 12 C 0.037 3.963 13 N -0.879 5.879 14 Si 0.947 3.053 15 H -0.281 1.281 16 H -0.278 1.278 17 H -0.273 1.273 18 N -0.491 5.491 19 C 0.297 3.703 20 O -0.190 6.190 21 H 0.109 0.891 22 H 0.090 0.910 23 H 0.129 0.871 24 H 0.236 0.764 25 H 0.207 0.793 26 H 0.322 0.678 27 H 0.310 0.690 28 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.402 6.288 -1.774 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.038 4.038 3 C -0.167 4.167 4 N -0.120 5.120 5 C -0.201 4.201 6 C -0.097 4.097 7 C 0.190 3.810 8 H 0.059 0.941 9 N -0.334 5.334 10 C -0.575 4.575 11 H 0.053 0.947 12 C -0.166 4.166 13 N -0.515 5.515 14 Si 0.773 3.227 15 H -0.207 1.207 16 H -0.203 1.203 17 H -0.199 1.199 18 N -0.227 5.227 19 C 0.004 3.996 20 O -0.086 6.086 21 H 0.127 0.873 22 H 0.109 0.891 23 H 0.147 0.853 24 H 0.252 0.748 25 H 0.223 0.777 26 H 0.133 0.867 27 H 0.121 0.879 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.373 5.536 -1.529 19.250 hybrid contribution -0.537 0.055 0.470 0.715 sum -18.910 5.591 -1.060 19.747 Atomic orbital electron populations 1.20708 0.78596 1.06697 1.06066 1.23527 0.96622 0.80565 1.03119 1.22749 0.77969 1.03074 1.12909 1.44577 1.06723 1.09422 1.51290 1.22337 0.78244 1.01725 1.17835 1.22872 0.98964 0.86375 1.01468 1.17392 0.78613 0.95653 0.89314 0.94142 1.59155 1.66308 1.04953 1.02964 1.20982 0.91551 1.34031 1.10942 0.94700 1.25589 0.96814 0.96299 0.97924 1.70186 1.01065 1.43530 1.36694 0.85835 0.77114 0.79393 0.80397 1.20692 1.20341 1.19880 1.70234 0.93533 1.32204 1.26732 1.22647 0.87433 0.80489 1.09075 1.84568 1.10042 1.33575 1.80437 0.87285 0.89133 0.85273 0.74787 0.77656 0.86727 0.87882 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.40 71.23 0.74 0.21 15 2 C 0.01 0.23 7.27 24.51 0.18 0.40 15 3 C -0.05 -1.20 11.83 82.42 0.98 -0.23 15 4 N -0.43 -15.22 3.57 -470.03 -1.68 -16.90 15 5 C -0.07 -2.84 11.92 83.04 0.99 -1.85 15 6 C 0.03 1.60 5.82 41.38 0.24 1.84 15 7 C 0.30 16.09 3.09 43.42 0.13 16.23 15 8 H 0.04 2.25 8.10 -2.39 -0.02 2.23 15 9 N -0.81 -41.39 8.52 -174.94 -1.49 -42.89 15 10 C -0.54 -31.95 8.69 25.60 0.22 -31.73 15 11 H 0.03 2.17 7.74 -2.91 -0.02 2.15 15 12 C 0.04 2.18 5.39 84.65 0.46 2.63 15 13 N -0.88 -52.84 12.77 21.45 0.27 -52.56 15 14 Si 0.95 46.42 29.54 68.60 2.03 48.44 15 15 H -0.28 -13.85 7.11 99.48 0.71 -13.14 15 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 15 17 H -0.27 -13.03 7.11 99.48 0.71 -12.32 15 18 N -0.49 -24.31 11.26 -301.91 -3.40 -27.71 15 19 C 0.30 12.44 9.78 179.64 1.76 14.19 15 20 O -0.19 -6.46 10.77 -19.49 -0.21 -6.67 15 21 H 0.11 0.54 8.14 -2.38 -0.02 0.52 15 22 H 0.09 0.73 8.14 -2.38 -0.02 0.71 15 23 H 0.13 0.26 8.14 -2.39 -0.02 0.24 15 24 H 0.24 2.81 8.06 -2.91 -0.02 2.78 15 25 H 0.21 6.49 8.06 -2.91 -0.02 6.46 15 26 H 0.32 16.79 8.98 -89.69 -0.81 15.99 15 27 H 0.31 13.99 9.06 -89.70 -0.81 13.18 15 28 H 0.26 14.71 8.31 -92.71 -0.77 13.94 15 Total: -1.00 -77.03 254.69 0.80 -76.22 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -0.42 Total: 20.37 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 5.70 Total: 1.70 kcal Atomic # 7 Polarization: -133.77 SS G_CDS: -6.29 Total: -140.06 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.21 Total: -6.67 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -77.03 0.80 -76.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289112.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.345 kcal (2) G-P(sol) polarization free energy of solvation -77.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds