Wall clock time and date at job start Mon Mar 30 2020 03:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32679 * 125.59501 * 2 1 4 4 N 1.38770 * 107.71550 * 180.02562 * 3 2 1 5 5 C 1.37216 * 145.44290 * 180.43283 * 4 3 2 6 6 C 1.34668 * 106.91144 * 179.97438 * 5 4 3 7 7 C 1.50706 * 125.84775 * 179.84856 * 6 5 4 8 8 H 1.08997 * 109.47279 * 244.72010 * 7 6 5 9 9 N 1.46899 * 109.46719 * 4.71478 * 7 6 5 10 10 C 1.50695 * 109.47238 * 124.71461 * 7 6 5 11 11 H 1.08002 * 119.99880 * 0.02562 * 10 7 6 12 12 C 1.37873 * 119.99899 * 180.02562 * 10 7 6 13 13 N 1.31517 * 119.99939 * 180.02562 * 12 10 7 14 14 Si 1.86796 * 120.00209 * 0.02562 * 12 10 7 15 15 H 1.48494 * 109.47389 * 89.99608 * 14 12 10 16 16 H 1.48504 * 109.47442 * 210.00000 * 14 12 10 17 17 H 1.48508 * 109.47065 * 329.99866 * 14 12 10 18 18 N 1.34171 * 108.30994 * 359.58377 * 6 5 4 19 19 C 1.31486 * 109.32980 * 0.26518 * 18 6 5 20 20 O 1.35052 * 144.36541 * 180.02562 * 19 18 6 21 21 H 1.08994 * 109.47018 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47104 * 300.00348 * 1 2 3 23 23 H 1.09003 * 109.47208 * 59.99788 * 1 2 3 24 24 H 1.08004 * 126.14001 * 0.04044 * 3 2 1 25 25 H 1.08005 * 126.54393 * 359.86870 * 5 4 3 26 26 H 1.00902 * 111.00279 * 60.00097 * 9 7 6 27 27 H 1.00900 * 110.99809 * 183.95716 * 9 7 6 28 28 H 0.97000 * 120.00034 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2793 1.0789 0.0000 4 7 3.6000 0.6528 -0.0006 5 6 4.9144 1.0466 0.0049 6 6 5.6594 -0.0752 -0.0014 7 6 7.1653 -0.1346 -0.0019 8 1 7.5110 -0.5822 -0.9337 9 7 7.7089 1.2247 0.1194 10 6 7.6355 -0.9693 1.1613 11 1 6.9159 -1.4129 1.8334 12 6 8.9844 -1.1668 1.3674 13 7 9.3947 -1.8957 2.3822 14 14 10.2291 -0.3990 0.2052 15 1 10.6036 0.9495 0.7015 16 1 11.4399 -1.2564 0.1399 17 1 9.6332 -0.2799 -1.1499 18 7 4.8315 -1.1310 -0.0013 19 6 3.5866 -0.7079 -0.0008 20 8 2.2942 -1.0997 -0.0001 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 1.9408 2.1045 0.0006 25 1 5.2814 2.0623 0.0112 26 1 7.4027 1.6616 0.9758 27 1 8.7159 1.2183 0.0568 28 1 10.3437 -2.0344 2.5274 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261289113.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:58 Heat of formation + Delta-G solvation = 105.486339 kcal Electronic energy + Delta-G solvation = -14573.672639 eV Core-core repulsion = 12015.071756 eV Total energy + Delta-G solvation = -2558.600884 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.56546 -39.60704 -35.09255 -33.94879 -31.95995 -31.55665 -28.58911 -27.08596 -25.67428 -22.80574 -21.86527 -21.35592 -19.16665 -17.16840 -16.98606 -16.77325 -15.98926 -15.14336 -14.38705 -14.13833 -13.78428 -13.63239 -13.14773 -12.96536 -12.91617 -12.44431 -12.32185 -11.76963 -11.12303 -10.88128 -10.61108 -10.25524 -9.53320 -9.35941 -8.69367 -8.15394 -7.79266 -7.46065 -6.11740 -4.13449 1.51817 2.24090 2.61895 2.94727 3.18403 3.34077 3.34400 3.65586 4.31442 4.41994 4.71976 4.87810 5.14605 5.15634 5.21069 5.31552 5.53573 5.74080 6.01349 6.26940 6.31735 6.58753 6.94415 7.34439 7.51825 7.64088 8.03987 8.29417 8.44888 8.64102 9.01326 9.46167 11.01521 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.066040 B = 0.006982 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.884982 B = 4009.258714 C = 4264.267665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.001 4.001 3 C -0.035 4.035 4 N -0.439 5.439 5 C -0.072 4.072 6 C 0.113 3.887 7 C 0.251 3.749 8 H 0.061 0.939 9 N -0.850 5.850 10 C -0.532 4.532 11 H 0.080 0.920 12 C 0.070 3.930 13 N -0.891 5.891 14 Si 0.871 3.129 15 H -0.275 1.275 16 H -0.290 1.290 17 H -0.258 1.258 18 N -0.442 5.442 19 C 0.322 3.678 20 O -0.174 6.174 21 H 0.084 0.916 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.188 0.812 25 H 0.184 0.816 26 H 0.333 0.667 27 H 0.324 0.676 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.111 8.320 -5.092 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.051 4.051 3 C -0.152 4.152 4 N -0.127 5.127 5 C -0.198 4.198 6 C -0.015 4.015 7 C 0.141 3.859 8 H 0.079 0.921 9 N -0.384 5.384 10 C -0.573 4.573 11 H 0.098 0.902 12 C -0.133 4.133 13 N -0.529 5.529 14 Si 0.700 3.300 15 H -0.202 1.202 16 H -0.217 1.217 17 H -0.183 1.183 18 N -0.177 5.177 19 C 0.029 3.971 20 O -0.070 6.070 21 H 0.103 0.897 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.205 0.795 25 H 0.201 0.799 26 H 0.145 0.855 27 H 0.140 0.860 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.249 7.516 -5.685 17.926 hybrid contribution 0.992 0.870 0.459 1.397 sum -14.256 8.386 -5.226 17.346 Atomic orbital electron populations 1.20321 0.83242 1.04902 1.03935 1.22179 0.94600 0.82175 1.06138 1.21782 0.80532 1.00605 1.12258 1.44452 1.05595 1.10154 1.52493 1.21905 0.77248 1.01691 1.18933 1.20988 0.96278 0.85232 0.99007 1.17739 0.82898 0.86929 0.98295 0.92108 1.59552 1.13596 1.22116 1.43127 1.21579 0.93017 1.31707 1.10949 0.90202 1.25029 0.98238 0.94941 0.95058 1.69899 1.15426 1.38669 1.28911 0.87049 0.81472 0.78884 0.82631 1.20194 1.21709 1.18278 1.70414 0.91838 1.30457 1.25014 1.22494 0.86830 0.79094 1.08678 1.84545 1.10963 1.31152 1.80347 0.89691 0.89101 0.89136 0.79475 0.79912 0.85536 0.85981 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.40 36.01 0.37 -0.06 15 2 C 0.00 -0.01 7.27 -36.20 -0.26 -0.27 15 3 C -0.03 -0.46 11.83 -16.30 -0.19 -0.65 15 4 N -0.44 -8.07 3.57 -64.77 -0.23 -8.30 15 5 C -0.07 -1.42 11.16 -16.41 -0.18 -1.60 15 6 C 0.11 2.66 6.24 -82.83 -0.52 2.15 15 7 C 0.25 6.26 2.79 -70.02 -0.20 6.06 15 8 H 0.06 1.58 7.20 -51.93 -0.37 1.20 15 9 N -0.85 -18.39 8.44 -6.65 -0.06 -18.45 15 10 C -0.53 -15.44 9.27 -34.44 -0.32 -15.76 15 11 H 0.08 2.61 7.98 -52.49 -0.42 2.19 15 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 15 13 N -0.89 -27.46 13.96 55.43 0.77 -26.69 15 14 Si 0.87 21.02 24.61 -169.99 -4.18 16.83 15 15 H -0.28 -6.26 7.01 56.52 0.40 -5.87 15 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 17 H -0.26 -6.04 6.54 56.52 0.37 -5.67 15 18 N -0.44 -10.90 11.26 -10.87 -0.12 -11.02 15 19 C 0.32 6.81 9.78 -88.59 -0.87 5.94 15 20 O -0.17 -3.08 10.77 0.95 0.01 -3.06 15 21 H 0.08 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.09 0.42 8.14 -51.93 -0.42 0.00 15 23 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 15 24 H 0.19 1.61 8.06 -52.48 -0.42 1.19 15 25 H 0.18 3.10 7.74 -52.48 -0.41 2.70 15 26 H 0.33 6.79 8.72 -39.29 -0.34 6.45 15 27 H 0.32 7.10 4.29 -39.29 -0.17 6.93 15 28 H 0.27 7.61 8.31 -40.82 -0.34 7.27 15 LS Contribution 244.20 15.07 3.68 3.68 Total: -1.00 -34.50 244.20 -4.96 -39.46 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -2.57 Total: 9.81 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -2.26 Total: -2.26 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: 0.36 Total: -64.46 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: 0.01 Total: -3.06 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.18 Total: 16.83 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -34.50 -4.96 -39.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289113.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.947 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds