Wall clock time and date at job start Mon Mar 30 2020 03:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32679 * 125.59501 * 2 1 4 4 N 1.38770 * 107.71550 * 180.02562 * 3 2 1 5 5 C 1.37216 * 145.44290 * 180.43283 * 4 3 2 6 6 C 1.34668 * 106.91144 * 179.97438 * 5 4 3 7 7 C 1.50706 * 125.84775 * 179.84856 * 6 5 4 8 8 H 1.08997 * 109.47279 * 244.72010 * 7 6 5 9 9 N 1.46899 * 109.46719 * 4.71478 * 7 6 5 10 10 C 1.50695 * 109.47238 * 124.71461 * 7 6 5 11 11 H 1.08002 * 119.99880 * 0.02562 * 10 7 6 12 12 C 1.37873 * 119.99899 * 180.02562 * 10 7 6 13 13 N 1.31517 * 119.99939 * 180.02562 * 12 10 7 14 14 Si 1.86796 * 120.00209 * 0.02562 * 12 10 7 15 15 H 1.48494 * 109.47389 * 89.99608 * 14 12 10 16 16 H 1.48504 * 109.47442 * 210.00000 * 14 12 10 17 17 H 1.48508 * 109.47065 * 329.99866 * 14 12 10 18 18 N 1.34171 * 108.30994 * 359.58377 * 6 5 4 19 19 C 1.31486 * 109.32980 * 0.26518 * 18 6 5 20 20 O 1.35052 * 144.36541 * 180.02562 * 19 18 6 21 21 H 1.08994 * 109.47018 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47104 * 300.00348 * 1 2 3 23 23 H 1.09003 * 109.47208 * 59.99788 * 1 2 3 24 24 H 1.08004 * 126.14001 * 0.04044 * 3 2 1 25 25 H 1.08005 * 126.54393 * 359.86870 * 5 4 3 26 26 H 1.00902 * 111.00279 * 60.00097 * 9 7 6 27 27 H 1.00900 * 110.99809 * 183.95716 * 9 7 6 28 28 H 0.97000 * 120.00034 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2793 1.0789 0.0000 4 7 3.6000 0.6528 -0.0006 5 6 4.9144 1.0466 0.0049 6 6 5.6594 -0.0752 -0.0014 7 6 7.1653 -0.1346 -0.0019 8 1 7.5110 -0.5822 -0.9337 9 7 7.7089 1.2247 0.1194 10 6 7.6355 -0.9693 1.1613 11 1 6.9159 -1.4129 1.8334 12 6 8.9844 -1.1668 1.3674 13 7 9.3947 -1.8957 2.3822 14 14 10.2291 -0.3990 0.2052 15 1 10.6036 0.9495 0.7015 16 1 11.4399 -1.2564 0.1399 17 1 9.6332 -0.2799 -1.1499 18 7 4.8315 -1.1310 -0.0013 19 6 3.5866 -0.7079 -0.0008 20 8 2.2942 -1.0997 -0.0001 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 1.9408 2.1045 0.0006 25 1 5.2814 2.0623 0.0112 26 1 7.4027 1.6616 0.9758 27 1 8.7159 1.2183 0.0568 28 1 10.3437 -2.0344 2.5274 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261289113.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:58 Heat of formation + Delta-G solvation = 76.319250 kcal Electronic energy + Delta-G solvation = -14574.937419 eV Core-core repulsion = 12015.071756 eV Total energy + Delta-G solvation = -2559.865664 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.94313 -41.07230 -36.93923 -35.32607 -33.90789 -32.78743 -30.11657 -28.67974 -27.27231 -24.49084 -23.25862 -22.71679 -20.84420 -19.17234 -18.41679 -18.26873 -17.47372 -16.81087 -16.17656 -15.50159 -15.08679 -15.00565 -14.54437 -14.38024 -14.08550 -13.79052 -13.65323 -13.16895 -12.93030 -12.78074 -12.32632 -11.99321 -11.64652 -11.03295 -10.87126 -9.63588 -9.31822 -9.19298 -8.35237 -6.43950 0.37082 0.92651 1.22372 1.27207 1.37639 1.47571 1.69804 1.97611 2.26105 2.95753 3.29195 3.49320 3.89766 4.12412 4.16350 4.43711 4.56504 4.63737 4.76208 4.98129 5.07035 5.12117 5.25431 5.38565 5.75530 6.04890 6.25196 6.39806 6.58302 6.70649 6.95584 7.20543 8.82411 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.066040 B = 0.006982 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.884982 B = 4009.258714 C = 4264.267665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.009 3.991 3 C -0.050 4.050 4 N -0.433 5.433 5 C -0.045 4.045 6 C 0.065 3.935 7 C 0.263 3.737 8 H 0.047 0.953 9 N -0.827 5.827 10 C -0.542 4.542 11 H 0.021 0.979 12 C 0.011 3.989 13 N -0.943 5.943 14 Si 0.946 3.054 15 H -0.243 1.243 16 H -0.292 1.292 17 H -0.245 1.245 18 N -0.504 5.504 19 C 0.298 3.702 20 O -0.191 6.191 21 H 0.087 0.913 22 H 0.119 0.881 23 H 0.122 0.878 24 H 0.239 0.761 25 H 0.216 0.784 26 H 0.342 0.658 27 H 0.325 0.675 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.704 11.338 -6.380 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.039 4.039 3 C -0.164 4.164 4 N -0.120 5.120 5 C -0.173 4.173 6 C -0.062 4.062 7 C 0.152 3.848 8 H 0.064 0.936 9 N -0.361 5.361 10 C -0.582 4.582 11 H 0.039 0.961 12 C -0.187 4.187 13 N -0.583 5.583 14 Si 0.770 3.230 15 H -0.167 1.167 16 H -0.219 1.219 17 H -0.169 1.169 18 N -0.240 5.240 19 C 0.004 3.996 20 O -0.087 6.087 21 H 0.106 0.894 22 H 0.138 0.862 23 H 0.140 0.860 24 H 0.255 0.745 25 H 0.232 0.768 26 H 0.155 0.845 27 H 0.141 0.859 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.909 10.560 -6.970 21.119 hybrid contribution 1.221 -0.134 0.924 1.537 sum -15.689 10.425 -6.046 19.783 Atomic orbital electron populations 1.20713 0.78573 1.06036 1.06740 1.23556 0.96639 0.80568 1.03151 1.22729 0.77749 1.03115 1.12795 1.44613 1.06948 1.09215 1.51262 1.22135 0.77545 1.01636 1.16005 1.20801 0.95860 0.86651 1.02921 1.17377 0.84606 0.87428 0.95434 0.93577 1.59445 1.13489 1.19599 1.43520 1.21727 0.92423 1.32444 1.11626 0.96095 1.26020 1.00529 0.95308 0.96881 1.70076 1.16216 1.40632 1.31347 0.85847 0.77696 0.79115 0.80356 1.16745 1.21888 1.16907 1.70096 0.94131 1.32602 1.27136 1.22383 0.87283 0.80603 1.09299 1.84578 1.09941 1.33692 1.80466 0.89415 0.86241 0.85960 0.74500 0.76779 0.84529 0.85867 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.40 71.24 0.74 0.19 15 2 C 0.01 0.21 7.27 24.52 0.18 0.39 15 3 C -0.05 -1.13 11.83 82.42 0.98 -0.15 15 4 N -0.43 -15.30 3.57 -470.03 -1.68 -16.97 15 5 C -0.05 -1.75 11.16 83.03 0.93 -0.82 15 6 C 0.07 3.16 6.24 41.38 0.26 3.42 15 7 C 0.26 13.31 2.79 43.42 0.12 13.43 15 8 H 0.05 2.44 7.20 -2.39 -0.02 2.43 15 9 N -0.83 -34.49 8.44 -174.96 -1.48 -35.97 15 10 C -0.54 -33.00 9.27 25.60 0.24 -32.76 15 11 H 0.02 1.47 7.98 -2.91 -0.02 1.44 15 12 C 0.01 0.65 5.47 84.65 0.46 1.11 15 13 N -0.94 -60.43 13.96 21.45 0.30 -60.13 15 14 Si 0.95 43.48 24.61 68.60 1.69 45.17 15 15 H -0.24 -9.89 7.01 99.48 0.70 -9.20 15 16 H -0.29 -13.46 7.11 99.48 0.71 -12.75 15 17 H -0.25 -10.71 6.54 99.48 0.65 -10.06 15 18 N -0.50 -26.11 11.26 -301.91 -3.40 -29.51 15 19 C 0.30 12.84 9.78 179.64 1.76 14.60 15 20 O -0.19 -6.66 10.77 -19.51 -0.21 -6.87 15 21 H 0.09 0.78 8.14 -2.39 -0.02 0.76 15 22 H 0.12 0.46 8.14 -2.39 -0.02 0.44 15 23 H 0.12 0.39 8.14 -2.39 -0.02 0.37 15 24 H 0.24 2.73 8.06 -2.91 -0.02 2.71 15 25 H 0.22 6.62 7.74 -2.91 -0.02 6.60 15 26 H 0.34 13.41 8.72 -89.69 -0.78 12.62 15 27 H 0.32 13.41 4.29 -89.69 -0.38 13.02 15 28 H 0.27 15.93 8.31 -92.71 -0.77 15.16 15 Total: -1.00 -82.19 244.20 0.85 -81.33 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.03 Total: 23.55 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 5.66 Total: -0.59 kcal Atomic # 7 Polarization: -136.33 SS G_CDS: -6.25 Total: -142.58 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.21 Total: -6.87 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.69 Total: 45.17 kcal Total: -82.19 0.85 -81.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289113.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.650 kcal (2) G-P(sol) polarization free energy of solvation -82.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds