Wall clock time and date at job start Mon Mar 30 2020 03:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31029 * 1 3 3 Si 1.86794 * 120.00048 * 2 1 4 4 H 1.48503 * 109.47247 * 270.00338 * 3 2 1 5 5 H 1.48503 * 109.47138 * 29.99991 * 3 2 1 6 6 H 1.48500 * 109.47144 * 149.99917 * 3 2 1 7 7 C 1.39840 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00476 * 200.43049 * 7 2 1 9 9 C 1.40681 * 120.00180 * 20.42149 * 7 2 1 10 10 C 1.47113 * 121.06066 * 35.65123 * 9 7 2 11 11 O 1.22032 * 120.86496 * 0.07406 * 10 9 7 12 12 N 1.34550 * 118.26446 * 180.02562 * 10 9 7 13 13 C 1.29938 * 121.21928 * 359.28467 * 12 10 9 14 14 N 1.36113 * 123.72361 * 0.02562 * 13 12 10 15 15 C 1.35579 * 120.47949 * 1.48028 * 14 13 12 16 16 N 1.36045 * 124.21518 * 177.32928 * 15 14 13 17 17 C 1.46457 * 113.39932 * 20.73912 * 16 15 14 18 18 C 1.53450 * 108.26167 * 308.24710 * 17 16 15 19 19 C 1.46760 * 117.25973 * 181.50201 * 14 13 12 20 20 H 0.97001 * 119.99993 * 0.02562 * 1 2 3 21 21 H 1.08001 * 118.13454 * 179.97438 * 13 12 10 22 22 H 1.00902 * 110.99624 * 254.97940 * 16 15 14 23 23 H 1.08996 * 109.70473 * 67.94782 * 17 16 15 24 24 H 1.09002 * 109.70757 * 188.56028 * 17 16 15 25 25 H 1.09001 * 109.79157 * 306.18931 * 18 17 16 26 26 H 1.09002 * 109.80001 * 185.34824 * 18 17 16 27 27 H 1.09004 * 109.36693 * 317.38350 * 19 14 13 28 28 H 1.08996 * 109.36776 * 77.01104 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4417 2.6526 0.7000 6 1 3.5418 1.4401 0.7001 7 6 2.0095 -1.2111 -0.0005 8 1 3.0385 -1.2407 0.3259 9 6 1.3724 -2.3909 -0.4262 10 6 0.3917 -2.3709 -1.5225 11 8 0.1085 -1.3284 -2.0902 12 7 -0.1841 -3.5321 -1.8836 13 6 0.1232 -4.6483 -1.2937 14 7 1.0304 -4.7443 -0.2835 15 6 1.6542 -3.6368 0.1882 16 7 2.5326 -3.6375 1.2271 17 6 3.1197 -4.9530 1.4915 18 6 1.9791 -5.9713 1.6210 19 6 1.2940 -6.0825 0.2584 20 1 -0.4850 0.8401 -0.0004 21 1 -0.3697 -5.5510 -1.6231 22 1 2.1081 -3.2570 2.0596 23 1 3.7735 -5.2361 0.6666 24 1 3.6907 -4.9208 2.4194 25 1 1.2623 -5.6297 2.3677 26 1 2.3818 -6.9416 1.9118 27 1 0.3519 -6.6193 0.3700 28 1 1.9405 -6.6295 -0.4279 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261301074.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:11 Heat of formation + Delta-G solvation = -7.432067 kcal Electronic energy + Delta-G solvation = -15243.733627 eV Core-core repulsion = 12680.236234 eV Total energy + Delta-G solvation = -2563.497393 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.77798 -38.99377 -37.05203 -35.36518 -34.28938 -32.82263 -30.43366 -27.26538 -26.23430 -24.22097 -23.71703 -21.28282 -19.36911 -18.66844 -18.08656 -17.12284 -16.66067 -16.31165 -16.06280 -15.44546 -14.91902 -14.74680 -14.19996 -14.02534 -13.93393 -13.22026 -12.91428 -12.72534 -12.54022 -12.04519 -11.91284 -11.85465 -11.52859 -11.03137 -10.65955 -9.55788 -9.48573 -8.74477 -8.33678 -5.97985 0.80372 0.93679 1.36312 1.49653 1.53156 2.01842 2.29411 2.99706 3.38521 3.71864 3.74080 3.83338 3.98164 4.16031 4.38224 4.48696 4.64473 4.75804 4.90192 5.06365 5.17221 5.26899 5.39119 5.74998 6.04898 6.37468 6.51301 6.71893 7.00735 7.20337 7.63775 7.98625 8.50405 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.034474 B = 0.011607 C = 0.009131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.019178 B = 2411.843538 C = 3065.870212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.032 3.968 3 Si 0.975 3.025 4 H -0.284 1.284 5 H -0.270 1.270 6 H -0.244 1.244 7 C -0.446 4.446 8 H 0.084 0.916 9 C -0.071 4.071 10 C 0.475 3.525 11 O -0.577 6.577 12 N -0.658 5.658 13 C 0.347 3.653 14 N -0.479 5.479 15 C 0.114 3.886 16 N -0.603 5.603 17 C 0.050 3.950 18 C -0.159 4.159 19 C 0.081 3.919 20 H 0.275 0.725 21 H 0.234 0.766 22 H 0.343 0.657 23 H 0.072 0.928 24 H 0.105 0.895 25 H 0.065 0.935 26 H 0.127 0.873 27 H 0.119 0.881 28 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.059 -15.143 7.173 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.185 4.185 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.194 1.194 6 H -0.167 1.167 7 C -0.477 4.477 8 H 0.102 0.898 9 C -0.084 4.084 10 C 0.269 3.731 11 O -0.459 6.459 12 N -0.405 5.405 13 C 0.062 3.938 14 N -0.179 5.179 15 C -0.088 4.088 16 N -0.235 5.235 17 C -0.078 4.078 18 C -0.199 4.199 19 C -0.040 4.040 20 H 0.085 0.915 21 H 0.250 0.750 22 H 0.171 0.829 23 H 0.090 0.910 24 H 0.123 0.877 25 H 0.084 0.916 26 H 0.145 0.855 27 H 0.137 0.863 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.812 -14.103 6.079 16.094 hybrid contribution -0.088 0.733 0.628 0.969 sum 4.724 -13.371 6.707 15.687 Atomic orbital electron populations 1.69911 1.09610 1.29650 1.34124 1.26676 0.95079 1.04522 0.92206 0.85328 0.79708 0.76905 0.78348 1.21046 1.19437 1.16675 1.18964 0.98443 0.91437 1.38858 0.89791 1.20560 0.98406 0.93427 0.96055 1.19959 0.83024 0.86265 0.83899 1.90535 1.64779 1.33310 1.57323 1.68753 1.34615 1.01037 1.36116 1.25107 0.86211 0.98150 0.84329 1.44915 1.33139 1.08843 1.31001 1.18257 1.04202 0.86397 0.99896 1.55893 1.34337 1.25839 1.07420 1.22240 0.96593 0.85769 1.03215 1.22494 0.98540 1.03223 0.95597 1.22407 1.04123 0.80570 0.96859 0.91525 0.74972 0.82908 0.91001 0.87710 0.91608 0.85501 0.86273 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -50.70 11.16 21.82 0.24 -50.45 15 2 C 0.03 1.84 4.61 85.20 0.39 2.24 15 3 Si 0.98 45.11 29.61 68.60 2.03 47.15 15 4 H -0.28 -13.66 7.11 99.48 0.71 -12.95 15 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 6 H -0.24 -10.25 7.11 99.48 0.71 -9.55 15 7 C -0.45 -26.07 8.38 23.25 0.19 -25.88 15 8 H 0.08 4.70 7.79 -2.91 -0.02 4.68 15 9 C -0.07 -4.05 5.58 -19.49 -0.11 -4.16 15 10 C 0.48 29.73 7.44 86.61 0.64 30.38 15 11 O -0.58 -41.30 15.05 -5.42 -0.08 -41.38 15 12 N -0.66 -34.38 10.43 -317.28 -3.31 -37.69 15 13 C 0.35 12.75 11.30 180.08 2.04 14.78 15 14 N -0.48 -16.21 3.03 -523.40 -1.58 -17.79 15 15 C 0.11 4.98 6.87 133.71 0.92 5.90 15 16 N -0.60 -21.89 5.56 -342.07 -1.90 -23.79 15 17 C 0.05 1.15 6.69 86.54 0.58 1.73 15 18 C -0.16 -2.63 6.25 30.72 0.19 -2.43 15 19 C 0.08 1.50 6.31 86.30 0.54 2.04 15 20 H 0.28 16.21 8.30 -92.71 -0.77 15.44 15 21 H 0.23 5.21 7.97 -2.91 -0.02 5.19 15 22 H 0.34 12.47 8.81 -89.69 -0.79 11.68 15 23 H 0.07 1.72 8.13 -2.39 -0.02 1.70 15 24 H 0.10 1.90 8.14 -2.39 -0.02 1.88 15 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 15 26 H 0.13 1.09 8.14 -2.39 -0.02 1.07 15 27 H 0.12 1.43 8.09 -2.39 -0.02 1.41 15 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 15 Total: -1.00 -88.41 241.24 1.19 -87.22 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.40 Total: 12.14 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 5.39 Total: 24.61 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -6.55 Total: -129.73 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.08 Total: -41.38 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.15 kcal Total: -88.41 1.19 -87.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301074.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.788 kcal (2) G-P(sol) polarization free energy of solvation -88.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds