Wall clock time and date at job start Mon Mar 30 2020 03:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47083 * 239.99951 * 3 2 1 5 5 H 1.48500 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47024 * 120.00002 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99974 * 163.08661 * 7 2 1 9 9 N 1.36936 * 120.00005 * 343.09585 * 7 2 1 10 10 C 1.46928 * 120.63013 * 151.82709 * 9 7 2 11 11 C 1.53196 * 108.89135 * 126.29699 * 10 9 7 12 12 C 1.53349 * 109.15353 * 54.57497 * 11 10 9 13 13 O 1.42890 * 109.42069 * 178.67523 * 12 11 10 14 14 C 1.42903 * 114.00279 * 270.12804 * 13 12 11 15 15 F 1.39901 * 109.47035 * 300.00073 * 14 13 12 16 16 F 1.39905 * 109.46874 * 59.99975 * 14 13 12 17 17 C 1.53044 * 109.60552 * 298.71437 * 12 11 10 18 18 C 1.46924 * 120.63127 * 331.80020 * 9 7 2 19 19 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.58355 * 246.14871 * 10 9 7 21 21 H 1.08994 * 109.59076 * 6.43731 * 10 9 7 22 22 H 1.08998 * 109.49426 * 174.65878 * 11 10 9 23 23 H 1.09000 * 109.49457 * 294.75312 * 11 10 9 24 24 H 1.09003 * 109.42058 * 58.74791 * 12 11 10 25 25 H 1.08998 * 109.47820 * 180.02562 * 14 13 12 26 26 H 1.08992 * 109.49619 * 301.41603 * 17 12 11 27 27 H 1.08999 * 109.52313 * 181.33616 * 17 12 11 28 28 H 1.09000 * 109.58664 * 353.42162 * 18 9 7 29 29 H 1.08996 * 109.58580 * 113.70091 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3699 -2.3623 0.3459 10 6 1.8139 -3.6529 -0.1982 11 6 2.0707 -4.6187 0.9629 12 6 0.8131 -4.7007 1.8366 13 8 1.0357 -5.6239 2.9043 14 6 0.6748 -6.9710 2.5928 15 9 -0.6866 -7.0275 2.2753 16 9 1.4272 -7.4145 1.4999 17 6 0.4984 -3.3190 2.4146 18 6 0.2263 -2.3402 1.2680 19 1 -0.4849 0.8400 0.0004 20 1 1.0402 -4.0608 -0.8485 21 1 2.7330 -3.5129 -0.7671 22 1 2.3088 -5.6065 0.5685 23 1 2.9057 -4.2544 1.5613 24 1 -0.0271 -5.0411 1.2314 25 1 0.8734 -7.6089 3.4539 26 1 1.3481 -2.9671 2.9994 27 1 -0.3818 -3.3836 3.0543 28 1 0.0992 -1.3345 1.6685 29 1 -0.6773 -2.6386 0.7365 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306160330.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:31 Heat of formation + Delta-G solvation = -145.212549 kcal Electronic energy + Delta-G solvation = -15820.316124 eV Core-core repulsion = 12800.154935 eV Total energy + Delta-G solvation = -3020.161190 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.93958 -47.04928 -38.42309 -36.09633 -32.58953 -30.32511 -29.59048 -25.91228 -24.44792 -22.22900 -21.89376 -19.44087 -18.07125 -17.64538 -17.50797 -16.63935 -14.98998 -14.56944 -14.10952 -13.93847 -13.59143 -13.43331 -13.32434 -13.10640 -12.90952 -12.32659 -12.00404 -11.49977 -11.29900 -11.06060 -10.71690 -10.70849 -10.32448 -10.18052 -9.89540 -9.61756 -9.38782 -8.48252 -6.71671 -5.81075 -3.23783 3.24124 3.38820 3.44184 3.45740 3.82125 4.48738 4.62102 4.89236 5.26692 5.36999 5.45863 5.54774 5.70126 5.98079 6.22466 6.27497 6.45855 6.54127 6.61556 6.74530 6.93274 7.05584 7.30427 7.59995 7.78011 8.42890 9.18704 9.81645 10.38485 11.28134 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.063565 B = 0.007204 C = 0.006910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.388427 B = 3886.056547 C = 4051.285922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.147 3.853 11 C -0.155 4.155 12 C 0.086 3.914 13 O -0.386 6.386 14 C 0.402 3.598 15 F -0.213 7.213 16 F -0.211 7.211 17 C -0.133 4.133 18 C 0.173 3.827 19 H 0.255 0.745 20 H 0.019 0.981 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.159 0.841 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 -11.700 5.389 12.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.194 4.194 12 C 0.030 3.970 13 O -0.308 6.308 14 C 0.310 3.690 15 F -0.195 7.195 16 F -0.193 7.193 17 C -0.173 4.173 18 C 0.047 3.953 19 H 0.065 0.935 20 H 0.037 0.963 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.175 0.825 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.907 -11.481 5.498 12.762 hybrid contribution 0.248 0.650 -0.305 0.760 sum 1.155 -10.831 5.193 12.067 Atomic orbital electron populations 1.70011 1.05300 1.25745 1.53772 1.25060 0.95302 0.98485 1.00699 0.86340 0.78904 0.83178 0.78175 1.20843 1.21601 1.20961 1.19158 0.92609 0.84752 1.41921 0.91610 1.44097 1.35849 1.01684 1.49948 1.20870 0.97997 0.86600 0.92476 1.22710 0.97473 1.00341 0.98923 1.22506 0.97944 0.89393 0.87108 1.88429 1.84622 1.15920 1.41858 1.23080 0.72478 0.87023 0.86465 1.93043 1.35556 1.96391 1.94495 1.93042 1.76563 1.89756 1.59924 1.22394 1.01142 0.92932 1.00814 1.20802 0.88853 0.98046 0.87602 0.93483 0.96349 0.92241 0.91995 0.91412 0.91647 0.82482 0.91598 0.92422 0.88717 0.96080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 11.20 55.49 0.62 -25.61 15 2 C 0.00 0.09 4.92 -17.43 -0.09 0.00 15 3 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.25 -7.05 9.58 -15.06 -0.14 -7.19 15 8 H 0.07 1.78 7.89 -52.49 -0.41 1.36 15 9 N -0.59 -15.11 2.99 -172.32 -0.52 -15.63 15 10 C 0.15 3.19 6.51 -3.71 -0.02 3.16 15 11 C -0.15 -2.90 5.58 -26.45 -0.15 -3.05 15 12 C 0.09 1.59 2.37 -26.53 -0.06 1.52 15 13 O -0.39 -6.21 10.29 -35.23 -0.36 -6.58 15 14 C 0.40 5.10 6.26 101.05 0.63 5.73 15 15 F -0.21 -3.03 16.63 2.25 0.04 -2.99 15 16 F -0.21 -2.97 15.44 2.25 0.03 -2.93 15 17 C -0.13 -2.67 5.73 -26.61 -0.15 -2.82 15 18 C 0.17 4.17 5.30 -3.71 -0.02 4.16 15 19 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 20 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 15 21 H 0.06 1.25 7.93 -51.93 -0.41 0.83 15 22 H 0.06 1.05 6.48 -51.93 -0.34 0.72 15 23 H 0.07 1.31 8.14 -51.93 -0.42 0.88 15 24 H 0.07 1.23 7.20 -51.93 -0.37 0.86 15 25 H 0.16 1.22 8.14 -51.93 -0.42 0.80 15 26 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 28 H 0.09 2.52 6.06 -51.93 -0.31 2.21 15 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 LS Contribution 246.44 15.07 3.71 3.71 Total: -1.00 -29.90 246.44 -5.03 -34.93 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -3.52 Total: -3.06 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 0.00 Total: 1.52 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.11 Total: -41.24 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.36 Total: -6.58 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.07 Total: -5.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.90 -5.03 -34.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306160330.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.283 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds