Wall clock time and date at job start Mon Mar 30 2020 03:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47083 * 239.99951 * 3 2 1 5 5 H 1.48500 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47024 * 120.00002 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99974 * 163.08661 * 7 2 1 9 9 N 1.36936 * 120.00005 * 343.09585 * 7 2 1 10 10 C 1.46928 * 120.63013 * 151.82709 * 9 7 2 11 11 C 1.53196 * 108.89135 * 126.29699 * 10 9 7 12 12 C 1.53349 * 109.15353 * 54.57497 * 11 10 9 13 13 O 1.42890 * 109.42069 * 178.67523 * 12 11 10 14 14 C 1.42903 * 114.00279 * 270.12804 * 13 12 11 15 15 F 1.39901 * 109.47035 * 300.00073 * 14 13 12 16 16 F 1.39905 * 109.46874 * 59.99975 * 14 13 12 17 17 C 1.53044 * 109.60552 * 298.71437 * 12 11 10 18 18 C 1.46924 * 120.63127 * 331.80020 * 9 7 2 19 19 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.58355 * 246.14871 * 10 9 7 21 21 H 1.08994 * 109.59076 * 6.43731 * 10 9 7 22 22 H 1.08998 * 109.49426 * 174.65878 * 11 10 9 23 23 H 1.09000 * 109.49457 * 294.75312 * 11 10 9 24 24 H 1.09003 * 109.42058 * 58.74791 * 12 11 10 25 25 H 1.08998 * 109.47820 * 180.02562 * 14 13 12 26 26 H 1.08992 * 109.49619 * 301.41603 * 17 12 11 27 27 H 1.08999 * 109.52313 * 181.33616 * 17 12 11 28 28 H 1.09000 * 109.58664 * 353.42162 * 18 9 7 29 29 H 1.08996 * 109.58580 * 113.70091 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3699 -2.3623 0.3459 10 6 1.8139 -3.6529 -0.1982 11 6 2.0707 -4.6187 0.9629 12 6 0.8131 -4.7007 1.8366 13 8 1.0357 -5.6239 2.9043 14 6 0.6748 -6.9710 2.5928 15 9 -0.6866 -7.0275 2.2753 16 9 1.4272 -7.4145 1.4999 17 6 0.4984 -3.3190 2.4146 18 6 0.2263 -2.3402 1.2680 19 1 -0.4849 0.8400 0.0004 20 1 1.0402 -4.0608 -0.8485 21 1 2.7330 -3.5129 -0.7671 22 1 2.3088 -5.6065 0.5685 23 1 2.9057 -4.2544 1.5613 24 1 -0.0271 -5.0411 1.2314 25 1 0.8734 -7.6089 3.4539 26 1 1.3481 -2.9671 2.9994 27 1 -0.3818 -3.3836 3.0543 28 1 0.0992 -1.3345 1.6685 29 1 -0.6773 -2.6386 0.7365 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306160330.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:30 Heat of formation + Delta-G solvation = -164.495261 kcal Electronic energy + Delta-G solvation = -15821.152285 eV Core-core repulsion = 12800.154935 eV Total energy + Delta-G solvation = -3020.997351 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.98745 -48.10593 -39.92791 -37.71131 -34.48621 -32.09017 -31.40810 -27.45637 -25.97513 -23.94114 -23.58657 -21.12236 -19.29589 -19.05191 -18.57993 -18.29342 -16.89553 -16.09441 -15.54765 -15.43611 -15.25059 -14.92153 -14.68707 -14.53401 -14.44258 -13.72102 -13.41634 -13.09425 -13.03033 -12.75765 -12.57158 -12.44203 -12.08348 -11.97382 -11.79974 -11.35373 -10.98022 -10.55460 -8.75413 -7.90780 -5.36903 1.47768 1.50374 1.57283 2.13013 2.50528 2.77686 3.25923 3.59702 3.70074 3.75033 3.93281 4.02866 4.16249 4.38599 4.58441 4.64883 4.76712 4.89664 5.00605 5.07991 5.25743 5.41952 5.57661 5.62554 5.72727 6.36167 7.11038 7.80185 8.32896 9.16699 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.063565 B = 0.007204 C = 0.006910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.388427 B = 3886.056547 C = 4051.285922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.970 3.030 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.269 4.269 8 H 0.068 0.932 9 N -0.612 5.612 10 C 0.143 3.857 11 C -0.142 4.142 12 C 0.094 3.906 13 O -0.391 6.391 14 C 0.396 3.604 15 F -0.223 7.223 16 F -0.219 7.219 17 C -0.122 4.122 18 C 0.179 3.821 19 H 0.252 0.748 20 H 0.015 0.985 21 H 0.062 0.938 22 H 0.083 0.917 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.217 0.783 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.853 -12.844 6.210 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.243 4.243 3 Si 0.798 3.202 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.399 4.399 8 H 0.086 0.914 9 N -0.336 5.336 10 C 0.017 3.983 11 C -0.181 4.181 12 C 0.038 3.962 13 O -0.313 6.313 14 C 0.305 3.695 15 F -0.205 7.205 16 F -0.201 7.201 17 C -0.161 4.161 18 C 0.053 3.947 19 H 0.061 0.939 20 H 0.033 0.967 21 H 0.081 0.919 22 H 0.101 0.899 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.233 0.767 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 1.814 -12.661 6.322 14.267 hybrid contribution -0.045 0.913 -0.578 1.082 sum 1.769 -11.748 5.743 13.196 Atomic orbital electron populations 1.70165 1.06727 1.26160 1.55058 1.25833 0.96066 1.01603 1.00823 0.85303 0.77565 0.78936 0.78403 1.20042 1.21906 1.20316 1.19501 0.92958 0.85926 1.41520 0.91417 1.44366 1.35991 1.02486 1.50733 1.21002 0.97826 0.85732 0.93716 1.22540 0.97491 1.00337 0.97704 1.22157 0.97452 0.89155 0.87439 1.88397 1.84774 1.17299 1.40782 1.23989 0.71673 0.85916 0.87916 1.93027 1.36483 1.96285 1.94694 1.93024 1.76715 1.89592 1.60749 1.22132 1.01752 0.93147 0.99118 1.20579 0.88007 0.97587 0.88492 0.93903 0.96672 0.91933 0.89890 0.91764 0.92179 0.76682 0.92025 0.90660 0.91753 0.98058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.47 11.20 21.65 0.24 -55.23 15 2 C -0.05 -2.67 4.92 84.86 0.42 -2.26 15 3 Si 0.97 44.82 29.59 68.60 2.03 46.85 15 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 15 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 7 C -0.27 -14.97 9.58 84.03 0.81 -14.17 15 8 H 0.07 3.65 7.89 -2.91 -0.02 3.63 15 9 N -0.61 -31.46 2.99 -699.11 -2.09 -33.55 15 10 C 0.14 6.11 6.51 86.36 0.56 6.67 15 11 C -0.14 -5.05 5.58 30.78 0.17 -4.88 15 12 C 0.09 3.31 2.37 30.73 0.07 3.38 15 13 O -0.39 -11.39 10.29 -148.98 -1.53 -12.93 15 14 C 0.40 8.65 6.26 113.37 0.71 9.36 15 15 F -0.22 -5.76 16.63 44.97 0.75 -5.02 15 16 F -0.22 -5.47 15.44 44.97 0.69 -4.77 15 17 C -0.12 -4.80 5.73 30.67 0.18 -4.62 15 18 C 0.18 8.81 5.30 86.36 0.46 9.27 15 19 H 0.25 14.44 8.31 -92.71 -0.77 13.67 15 20 H 0.02 0.66 8.14 -2.39 -0.02 0.64 15 21 H 0.06 2.59 7.93 -2.39 -0.02 2.57 15 22 H 0.08 2.62 6.48 -2.39 -0.02 2.60 15 23 H 0.06 2.35 8.14 -2.39 -0.02 2.33 15 24 H 0.06 2.18 7.20 -2.39 -0.02 2.16 15 25 H 0.22 2.23 8.14 -2.39 -0.02 2.21 15 26 H 0.06 2.47 8.14 -2.39 -0.02 2.45 15 27 H 0.07 2.66 8.14 -2.39 -0.02 2.64 15 28 H 0.06 3.54 6.06 -2.39 -0.01 3.52 15 29 H 0.00 0.07 8.14 -2.39 -0.02 0.05 15 Total: -1.00 -64.15 246.44 4.61 -59.54 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: 1.14 Total: 2.35 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 3.37 Total: 2.76 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -1.85 Total: -88.78 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -1.53 Total: -12.93 kcal Atomic # 9 Polarization: -11.23 SS G_CDS: 1.44 Total: -9.79 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -64.15 4.61 -59.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306160330.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.952 kcal (2) G-P(sol) polarization free energy of solvation -64.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds