Wall clock time and date at job start Mon Mar 30 2020 03:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00246 * 2 1 4 4 H 1.48500 * 109.46683 * 239.99784 * 3 2 1 5 5 H 1.48499 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46961 * 119.99997 * 3 2 1 7 7 C 1.38813 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99682 * 189.78696 * 7 2 1 9 9 N 1.36938 * 120.00422 * 9.79788 * 7 2 1 10 10 C 1.47153 * 120.98056 * 31.36104 * 9 7 2 11 11 C 1.53287 * 108.38584 * 129.48863 * 10 9 7 12 12 O 1.42971 * 109.22159 * 52.30485 * 11 10 9 13 13 C 1.42968 * 114.16259 * 297.41378 * 12 11 10 14 14 C 1.47149 * 120.98141 * 211.38808 * 9 7 2 15 15 H 1.08998 * 109.68101 * 110.79061 * 14 9 7 16 16 C 1.52995 * 109.68244 * 350.26511 * 14 9 7 17 17 C 1.53000 * 109.46918 * 68.59079 * 16 14 9 18 18 F 1.39895 * 109.47325 * 65.44918 * 17 16 14 19 19 F 1.39898 * 109.47500 * 185.45135 * 17 16 14 20 20 H 0.97003 * 119.99615 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.68548 * 9.75959 * 10 9 7 22 22 H 1.09003 * 109.68174 * 249.21176 * 10 9 7 23 23 H 1.08995 * 109.51546 * 292.38054 * 11 10 9 24 24 H 1.09001 * 109.55953 * 172.24841 * 11 10 9 25 25 H 1.08995 * 109.50913 * 182.50309 * 13 12 11 26 26 H 1.09000 * 109.51330 * 302.66387 * 13 12 11 27 27 H 1.08998 * 109.46972 * 188.58176 * 16 14 9 28 28 H 1.08990 * 109.47528 * 308.59147 * 16 14 9 29 29 H 1.09002 * 109.46983 * 305.45135 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0784 -1.2090 0.1595 9 7 1.3404 -2.3796 -0.2007 10 6 0.1406 -2.4327 -1.0510 11 6 0.3150 -3.5709 -2.0629 12 8 0.6530 -4.7726 -1.3659 13 6 1.8927 -4.7088 -0.6566 14 6 1.7989 -3.6288 0.4273 15 1 1.0870 -3.9377 1.1927 16 6 3.1748 -3.4124 1.0604 17 6 3.0414 -2.4754 2.2625 18 9 2.2800 -3.0983 3.2572 19 9 4.3125 -2.1784 2.7657 20 1 -0.4850 0.8401 0.0004 21 1 0.0228 -1.4866 -1.5793 22 1 -0.7383 -2.6212 -0.4344 23 1 1.1130 -3.3182 -2.7610 24 1 -0.6155 -3.7175 -2.6112 25 1 2.0965 -5.6737 -0.1925 26 1 2.6963 -4.4602 -1.3497 27 1 3.5780 -4.3702 1.3895 28 1 3.8468 -2.9682 0.3263 29 1 2.5492 -1.5538 1.9519 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306183442.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:45 Heat of formation + Delta-G solvation = -130.425304 kcal Electronic energy + Delta-G solvation = -16274.631597 eV Core-core repulsion = 13255.111630 eV Total energy + Delta-G solvation = -3019.519967 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.14787 -46.14710 -38.53149 -35.11906 -32.82630 -30.76130 -28.26959 -27.15380 -23.52487 -23.07205 -21.31980 -19.64503 -17.26890 -16.72279 -16.13697 -15.77437 -15.30035 -14.91389 -14.55732 -13.98235 -13.87036 -13.16495 -13.10083 -12.74395 -12.55491 -12.08071 -11.78179 -11.27330 -11.10570 -10.93865 -10.82484 -10.41507 -10.35644 -10.12849 -10.00876 -9.62152 -9.00456 -8.62934 -6.77948 -6.00159 -3.51308 3.25574 3.31986 3.32951 4.25921 4.47034 4.64259 5.06010 5.08091 5.29567 5.38009 5.63527 5.76974 5.89986 5.97191 6.10367 6.17276 6.26354 6.33078 6.38525 6.56236 6.79960 7.05648 7.47953 7.51930 7.86784 8.20619 8.95504 9.57094 10.18926 11.05098 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.019759 B = 0.016620 C = 0.010221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.707845 B = 1684.361868 C = 2738.684056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.014 3.986 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.275 4.275 8 H 0.070 0.930 9 N -0.593 5.593 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.394 6.394 13 C 0.056 3.944 14 C 0.138 3.862 15 H 0.045 0.955 16 C -0.152 4.152 17 C 0.236 3.764 18 F -0.219 7.219 19 F -0.226 7.226 20 H 0.260 0.740 21 H 0.093 0.907 22 H 0.030 0.970 23 H 0.040 0.960 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.671 -4.886 -0.820 6.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.187 4.187 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.404 4.404 8 H 0.088 0.912 9 N -0.319 5.319 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.312 6.312 13 C -0.023 4.023 14 C 0.031 3.969 15 H 0.063 0.937 16 C -0.190 4.190 17 C 0.184 3.816 18 F -0.200 7.200 19 F -0.207 7.207 20 H 0.070 0.930 21 H 0.111 0.889 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.436 -4.893 -0.778 6.030 hybrid contribution 0.624 1.071 0.114 1.244 sum 4.060 -3.822 -0.664 5.615 Atomic orbital electron populations 1.69966 1.05365 1.26243 1.51592 1.25259 0.95471 0.98557 0.99431 0.86400 0.79085 0.82982 0.78632 1.20554 1.21210 1.20282 1.19048 0.90959 0.83653 1.46736 0.91207 1.44057 1.31172 1.03237 1.53436 1.21421 0.88734 0.96686 0.91314 1.23348 0.99083 0.86730 0.95105 1.87799 1.39609 1.36557 1.67267 1.22940 0.86365 0.98712 0.94274 1.21087 0.92962 0.89097 0.93707 0.93730 1.22458 1.00128 0.99298 0.97141 1.23213 0.75389 1.00288 0.82748 1.92879 1.76326 1.85413 1.65410 1.92877 1.43818 1.94588 1.89439 0.93003 0.88902 0.95187 0.94143 0.90201 0.90066 0.93691 0.90955 0.88716 0.82659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.11 11.09 55.49 0.62 -23.50 15 2 C 0.01 0.37 5.08 -17.43 -0.09 0.28 15 3 Si 0.90 20.25 29.56 -169.99 -5.03 15.22 15 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 15 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 7 C -0.28 -6.81 6.44 -15.06 -0.10 -6.90 15 8 H 0.07 1.66 5.58 -52.49 -0.29 1.37 15 9 N -0.59 -13.97 3.03 -164.30 -0.50 -14.47 15 10 C 0.14 3.32 5.37 -3.54 -0.02 3.30 15 11 C 0.04 0.69 6.98 37.31 0.26 0.95 15 12 O -0.39 -7.84 10.74 -35.23 -0.38 -8.22 15 13 C 0.06 1.01 6.29 37.31 0.23 1.24 15 14 C 0.14 2.82 3.08 -67.42 -0.21 2.61 15 15 H 0.05 0.99 7.77 -51.93 -0.40 0.59 15 16 C -0.15 -2.77 4.44 -26.73 -0.12 -2.89 15 17 C 0.24 4.75 4.72 37.16 0.18 4.93 15 18 F -0.22 -4.57 16.92 2.25 0.04 -4.53 15 19 F -0.23 -4.45 17.34 2.25 0.04 -4.41 15 20 H 0.26 6.84 8.31 -40.82 -0.34 6.51 15 21 H 0.09 2.32 6.31 -51.93 -0.33 1.99 15 22 H 0.03 0.75 8.14 -51.93 -0.42 0.32 15 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 25 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 26 H 0.04 0.79 8.14 -51.93 -0.42 0.36 15 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 28 H 0.09 1.71 7.06 -51.93 -0.37 1.34 15 29 H 0.16 3.52 5.01 -51.93 -0.26 3.26 15 LS Contribution 241.29 15.07 3.64 3.64 Total: -1.00 -27.19 241.29 -4.76 -31.95 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -3.32 Total: 0.81 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 0.14 Total: 3.51 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.12 Total: -37.97 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.38 Total: -8.22 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.19 -4.76 -31.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306183442.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.480 kcal (2) G-P(sol) polarization free energy of solvation -27.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds