Wall clock time and date at job start Mon Mar 30 2020 03:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00246 * 2 1 4 4 H 1.48500 * 109.46683 * 239.99784 * 3 2 1 5 5 H 1.48499 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46961 * 119.99997 * 3 2 1 7 7 C 1.38813 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99682 * 189.78696 * 7 2 1 9 9 N 1.36938 * 120.00422 * 9.79788 * 7 2 1 10 10 C 1.47153 * 120.98056 * 31.36104 * 9 7 2 11 11 C 1.53287 * 108.38584 * 129.48863 * 10 9 7 12 12 O 1.42971 * 109.22159 * 52.30485 * 11 10 9 13 13 C 1.42968 * 114.16259 * 297.41378 * 12 11 10 14 14 C 1.47149 * 120.98141 * 211.38808 * 9 7 2 15 15 H 1.08998 * 109.68101 * 110.79061 * 14 9 7 16 16 C 1.52995 * 109.68244 * 350.26511 * 14 9 7 17 17 C 1.53000 * 109.46918 * 68.59079 * 16 14 9 18 18 F 1.39895 * 109.47325 * 65.44918 * 17 16 14 19 19 F 1.39898 * 109.47500 * 185.45135 * 17 16 14 20 20 H 0.97003 * 119.99615 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.68548 * 9.75959 * 10 9 7 22 22 H 1.09003 * 109.68174 * 249.21176 * 10 9 7 23 23 H 1.08995 * 109.51546 * 292.38054 * 11 10 9 24 24 H 1.09001 * 109.55953 * 172.24841 * 11 10 9 25 25 H 1.08995 * 109.50913 * 182.50309 * 13 12 11 26 26 H 1.09000 * 109.51330 * 302.66387 * 13 12 11 27 27 H 1.08998 * 109.46972 * 188.58176 * 16 14 9 28 28 H 1.08990 * 109.47528 * 308.59147 * 16 14 9 29 29 H 1.09002 * 109.46983 * 305.45135 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0784 -1.2090 0.1595 9 7 1.3404 -2.3796 -0.2007 10 6 0.1406 -2.4327 -1.0510 11 6 0.3150 -3.5709 -2.0629 12 8 0.6530 -4.7726 -1.3659 13 6 1.8927 -4.7088 -0.6566 14 6 1.7989 -3.6288 0.4273 15 1 1.0870 -3.9377 1.1927 16 6 3.1748 -3.4124 1.0604 17 6 3.0414 -2.4754 2.2625 18 9 2.2800 -3.0983 3.2572 19 9 4.3125 -2.1784 2.7657 20 1 -0.4850 0.8401 0.0004 21 1 0.0228 -1.4866 -1.5793 22 1 -0.7383 -2.6212 -0.4344 23 1 1.1130 -3.3182 -2.7610 24 1 -0.6155 -3.7175 -2.6112 25 1 2.0965 -5.6737 -0.1925 26 1 2.6963 -4.4602 -1.3497 27 1 3.5780 -4.3702 1.3895 28 1 3.8468 -2.9682 0.3263 29 1 2.5492 -1.5538 1.9519 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306183442.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:45 Heat of formation + Delta-G solvation = -147.481369 kcal Electronic energy + Delta-G solvation = -16275.371203 eV Core-core repulsion = 13255.111630 eV Total energy + Delta-G solvation = -3020.259573 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.78079 -47.78089 -40.14554 -36.79749 -34.55678 -32.57044 -29.84268 -28.93400 -25.29607 -24.69342 -22.93886 -21.35179 -19.03777 -18.37491 -17.77562 -17.38337 -17.03898 -16.51764 -16.22470 -15.69950 -15.45545 -14.92727 -14.73991 -14.47360 -14.19395 -13.66839 -13.44156 -12.88344 -12.85292 -12.69389 -12.45882 -12.15539 -12.07979 -11.85831 -11.68031 -11.22679 -10.65905 -10.52478 -8.66096 -7.92579 -5.46009 1.47064 1.48623 1.54112 2.42829 2.92256 3.09646 3.19890 3.41917 3.66138 3.78414 4.04768 4.30001 4.34260 4.46849 4.55782 4.66360 4.67670 4.78406 4.85840 5.03058 5.13289 5.28806 5.57606 5.61576 6.27311 6.35480 7.03728 7.71022 8.29413 9.11313 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.019759 B = 0.016620 C = 0.010221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.707845 B = 1684.361868 C = 2738.684056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.038 4.038 3 Si 0.956 3.044 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.268 4.268 8 H 0.081 0.919 9 N -0.609 5.609 10 C 0.148 3.852 11 C 0.048 3.952 12 O -0.402 6.402 13 C 0.058 3.942 14 C 0.133 3.867 15 H 0.023 0.977 16 C -0.142 4.142 17 C 0.239 3.761 18 F -0.224 7.224 19 F -0.221 7.221 20 H 0.253 0.747 21 H 0.069 0.931 22 H -0.001 1.001 23 H 0.049 0.951 24 H 0.103 0.897 25 H 0.115 0.885 26 H 0.057 0.943 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.270 -6.062 -1.267 8.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.235 4.235 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.199 1.199 7 C -0.397 4.397 8 H 0.099 0.901 9 N -0.335 5.335 10 C 0.022 3.978 11 C -0.030 4.030 12 O -0.321 6.321 13 C -0.020 4.020 14 C 0.027 3.973 15 H 0.041 0.959 16 C -0.180 4.180 17 C 0.187 3.813 18 F -0.206 7.206 19 F -0.203 7.203 20 H 0.062 0.938 21 H 0.087 0.913 22 H 0.017 0.983 23 H 0.067 0.933 24 H 0.121 0.879 25 H 0.133 0.867 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.062 -6.092 -1.225 8.015 hybrid contribution 0.137 1.388 0.323 1.432 sum 5.199 -4.704 -0.902 7.069 Atomic orbital electron populations 1.70121 1.06705 1.26246 1.53942 1.25919 0.96033 1.01340 1.00215 0.85513 0.77789 0.79575 0.78742 1.19869 1.22139 1.19887 1.19369 0.91511 0.84130 1.44667 0.90121 1.44341 1.31010 1.04136 1.54004 1.21256 0.87823 0.97159 0.91574 1.23203 1.00652 0.85186 0.93950 1.87799 1.40641 1.36248 1.67384 1.23063 0.85980 0.99357 0.93580 1.21256 0.93485 0.88450 0.94125 0.95882 1.22408 0.98983 1.00600 0.96009 1.22981 0.75212 0.99763 0.83388 1.92872 1.76610 1.85343 1.65753 1.92886 1.43294 1.94622 1.89456 0.93755 0.91305 0.98251 0.93278 0.87863 0.86671 0.92458 0.87433 0.88044 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.61 11.09 21.65 0.24 -51.37 15 2 C -0.04 -1.94 5.08 84.86 0.43 -1.51 15 3 Si 0.96 41.81 29.56 68.60 2.03 43.83 15 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 5 H -0.30 -13.21 7.11 99.48 0.71 -12.50 15 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 15 7 C -0.27 -13.11 6.44 84.03 0.54 -12.57 15 8 H 0.08 3.72 5.58 -2.91 -0.02 3.71 15 9 N -0.61 -28.38 3.03 -673.73 -2.04 -30.43 15 10 C 0.15 6.86 5.37 86.35 0.46 7.33 15 11 C 0.05 1.78 6.98 72.08 0.50 2.28 15 12 O -0.40 -14.96 10.74 -148.98 -1.60 -16.56 15 13 C 0.06 1.90 6.29 72.08 0.45 2.35 15 14 C 0.13 5.17 3.08 44.97 0.14 5.31 15 15 H 0.02 1.01 7.77 -2.39 -0.02 0.99 15 16 C -0.14 -4.77 4.44 30.59 0.14 -4.64 15 17 C 0.24 9.27 4.72 71.98 0.34 9.61 15 18 F -0.22 -9.11 16.92 44.97 0.76 -8.35 15 19 F -0.22 -8.24 17.34 44.97 0.78 -7.46 15 20 H 0.25 13.81 8.31 -92.71 -0.77 13.04 15 21 H 0.07 3.52 6.31 -2.39 -0.02 3.50 15 22 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 15 23 H 0.05 1.75 8.14 -2.39 -0.02 1.74 15 24 H 0.10 3.33 8.14 -2.39 -0.02 3.31 15 25 H 0.12 3.01 8.14 -2.39 -0.02 2.99 15 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 15 27 H 0.11 2.90 8.14 -2.39 -0.02 2.88 15 28 H 0.10 3.32 7.06 -2.39 -0.02 3.30 15 29 H 0.13 5.75 5.01 -2.39 -0.01 5.74 15 Total: -1.00 -57.86 241.29 4.33 -53.53 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.15 Total: 8.62 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 3.01 Total: 8.17 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -1.80 Total: -81.80 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -1.60 Total: -16.56 kcal Atomic # 9 Polarization: -17.35 SS G_CDS: 1.54 Total: -15.81 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -57.86 4.33 -53.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306183442.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.950 kcal (2) G-P(sol) polarization free energy of solvation -57.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds