Wall clock time and date at job start Mon Mar 30 2020 03:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99613 * 2 1 4 4 H 1.48504 * 109.47162 * 269.99599 * 3 2 1 5 5 H 1.48498 * 109.47520 * 30.00363 * 3 2 1 6 6 H 1.48507 * 109.46920 * 150.00005 * 3 2 1 7 7 C 1.38808 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99603 * 168.79339 * 7 2 1 9 9 N 1.36932 * 119.99956 * 348.79757 * 7 2 1 10 10 C 1.47147 * 120.98375 * 329.17199 * 9 7 2 11 11 C 1.52879 * 108.60944 * 230.50341 * 10 9 7 12 12 O 1.42966 * 109.29766 * 307.93471 * 11 10 9 13 13 C 1.42965 * 114.16693 * 62.44734 * 12 11 10 14 14 C 1.47150 * 120.98046 * 149.45609 * 9 7 2 15 15 H 1.09005 * 109.67911 * 249.16658 * 14 9 7 16 16 C 1.53001 * 109.68508 * 9.68021 * 14 9 7 17 17 C 1.52998 * 109.47135 * 184.43600 * 16 14 9 18 18 F 1.39896 * 109.47260 * 66.26147 * 17 16 14 19 19 F 1.39906 * 109.47013 * 186.25748 * 17 16 14 20 20 H 0.96999 * 119.99858 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.68137 * 350.28509 * 10 9 7 22 22 H 1.09000 * 109.68098 * 110.83670 * 10 9 7 23 23 H 1.08996 * 109.58125 * 187.92398 * 11 10 9 24 24 H 1.08994 * 109.40899 * 67.83782 * 11 10 9 25 25 H 1.09002 * 109.51263 * 177.49891 * 13 12 11 26 26 H 1.08997 * 109.50984 * 57.34035 * 13 12 11 27 27 H 1.09010 * 109.46790 * 304.43534 * 16 14 9 28 28 H 1.08996 * 109.47483 * 64.43049 * 16 14 9 29 29 H 1.08996 * 109.47151 * 306.25655 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0748 -1.2110 -0.1812 9 7 1.3452 -2.3766 0.2314 10 6 0.1568 -2.4164 1.0983 11 6 0.3406 -3.5321 2.1272 12 8 0.6756 -4.7469 1.4520 13 6 1.9083 -4.6945 0.7299 14 6 1.8014 -3.6373 -0.3750 15 1 1.0833 -3.9637 -1.1273 16 6 3.1708 -3.4304 -1.0254 17 6 3.5906 -4.7115 -1.7488 18 9 2.7283 -4.9428 -2.8259 19 9 4.9000 -4.5726 -2.2214 20 1 -0.4850 0.8400 0.0004 21 1 0.0441 -1.4610 1.6107 22 1 -0.7296 -2.6179 0.4969 23 1 -0.5849 -3.6695 2.6863 24 1 1.1440 -3.2635 2.8131 25 1 2.1106 -5.6683 0.2837 26 1 2.7177 -4.4296 1.4102 27 1 3.1126 -2.6109 -1.7419 28 1 3.9054 -3.1896 -0.2570 29 1 3.5413 -5.5523 -1.0569 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306183443.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:48 Heat of formation + Delta-G solvation = -131.400012 kcal Electronic energy + Delta-G solvation = -15978.937162 eV Core-core repulsion = 12959.374929 eV Total energy + Delta-G solvation = -3019.562233 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.61851 -46.62532 -38.55149 -34.94292 -33.08167 -30.75957 -28.44203 -26.67270 -23.96589 -23.37981 -21.22978 -19.62795 -17.35911 -17.08381 -16.57647 -15.84545 -15.43981 -15.09817 -14.51873 -13.92262 -13.69728 -13.51039 -13.33007 -12.99276 -12.87960 -12.35139 -11.95459 -11.38437 -11.08280 -11.02114 -10.75149 -10.40228 -10.33898 -10.24955 -10.03170 -9.64629 -8.98017 -8.60230 -6.73562 -5.88686 -3.38370 3.30971 3.38092 3.38923 4.11384 4.35429 4.42003 4.61284 4.93990 5.02909 5.29773 5.40264 5.55391 5.72671 5.80134 5.95002 6.09104 6.14905 6.31278 6.46141 6.60711 6.76470 7.06814 7.49419 7.65922 7.84542 8.30547 9.06427 9.67946 10.26879 11.19137 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.011885 C = 0.008673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.596569 B = 2355.319186 C = 3227.559946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.008 3.992 3 Si 0.905 3.095 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.261 4.261 8 H 0.070 0.930 9 N -0.589 5.589 10 C 0.144 3.856 11 C 0.036 3.964 12 O -0.392 6.392 13 C 0.047 3.953 14 C 0.141 3.859 15 H 0.044 0.956 16 C -0.159 4.159 17 C 0.258 3.742 18 F -0.207 7.207 19 F -0.213 7.213 20 H 0.256 0.744 21 H 0.093 0.907 22 H 0.029 0.971 23 H 0.081 0.919 24 H 0.041 0.959 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.642 -7.632 1.186 9.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.088 0.912 9 N -0.314 5.314 10 C 0.018 3.982 11 C -0.042 4.042 12 O -0.311 6.311 13 C -0.032 4.032 14 C 0.034 3.966 15 H 0.061 0.939 16 C -0.197 4.197 17 C 0.204 3.796 18 F -0.188 7.188 19 F -0.194 7.194 20 H 0.066 0.934 21 H 0.111 0.889 22 H 0.047 0.953 23 H 0.099 0.901 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.065 0.935 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.415 -7.625 1.157 8.886 hybrid contribution 0.556 1.180 -0.188 1.318 sum 4.970 -6.445 0.969 8.196 Atomic orbital electron populations 1.69988 1.05323 1.25742 1.53369 1.25197 0.95416 0.98517 1.00044 0.86268 0.79078 0.83380 0.77864 1.21186 1.21447 1.20361 1.19114 0.91149 0.83516 1.45244 0.91225 1.44007 1.32124 1.02491 1.52750 1.21335 0.88867 0.97032 0.90926 1.23286 0.99199 0.86325 0.95414 1.87795 1.40046 1.35755 1.67522 1.23133 0.86891 0.98691 0.94447 1.21013 0.92938 0.89312 0.93377 0.93864 1.22725 0.99567 0.95813 1.01631 1.22112 0.71980 1.01311 0.84205 1.92969 1.70321 1.95954 1.59581 1.92950 1.38742 1.97329 1.90428 0.93409 0.88855 0.95284 0.90059 0.94090 0.90440 0.93494 0.88048 0.88886 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 11.13 55.49 0.62 -24.87 15 2 C 0.01 0.21 5.05 -17.43 -0.09 0.12 15 3 Si 0.90 21.09 29.57 -169.99 -5.03 16.07 15 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.26 -6.81 8.58 -15.06 -0.13 -6.94 15 8 H 0.07 1.75 6.34 -52.49 -0.33 1.41 15 9 N -0.59 -14.33 3.04 -164.56 -0.50 -14.83 15 10 C 0.14 3.39 5.36 -3.75 -0.02 3.37 15 11 C 0.04 0.70 6.97 37.10 0.26 0.95 15 12 O -0.39 -7.74 10.74 -35.23 -0.38 -8.12 15 13 C 0.05 0.82 5.85 37.31 0.22 1.04 15 14 C 0.14 2.85 3.11 -67.42 -0.21 2.64 15 15 H 0.04 0.96 7.87 -51.93 -0.41 0.55 15 16 C -0.16 -2.82 3.69 -26.73 -0.10 -2.92 15 17 C 0.26 3.86 5.18 37.16 0.19 4.05 15 18 F -0.21 -3.51 16.99 2.25 0.04 -3.47 15 19 F -0.21 -3.33 17.34 2.25 0.04 -3.29 15 20 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 21 H 0.09 2.39 6.31 -51.93 -0.33 2.06 15 22 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.08 1.39 8.14 -51.93 -0.42 0.97 15 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.08 1.11 6.87 -51.93 -0.36 0.76 15 26 H 0.05 0.79 8.13 -51.93 -0.42 0.37 15 27 H 0.10 2.03 7.28 -51.92 -0.38 1.65 15 28 H 0.09 1.58 7.84 -51.93 -0.41 1.17 15 29 H 0.10 1.22 6.51 -51.93 -0.34 0.88 15 LS Contribution 243.83 15.07 3.67 3.67 Total: -1.00 -29.17 243.83 -4.79 -33.95 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -3.37 Total: -1.44 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 0.12 Total: 2.33 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.12 Total: -39.70 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.38 Total: -8.12 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 0.08 Total: -6.76 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.17 -4.79 -33.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306183443.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.448 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds