Wall clock time and date at job start Mon Mar 30 2020 03:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99613 * 2 1 4 4 H 1.48504 * 109.47162 * 269.99599 * 3 2 1 5 5 H 1.48498 * 109.47520 * 30.00363 * 3 2 1 6 6 H 1.48507 * 109.46920 * 150.00005 * 3 2 1 7 7 C 1.38808 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99603 * 168.79339 * 7 2 1 9 9 N 1.36932 * 119.99956 * 348.79757 * 7 2 1 10 10 C 1.47147 * 120.98375 * 329.17199 * 9 7 2 11 11 C 1.52879 * 108.60944 * 230.50341 * 10 9 7 12 12 O 1.42966 * 109.29766 * 307.93471 * 11 10 9 13 13 C 1.42965 * 114.16693 * 62.44734 * 12 11 10 14 14 C 1.47150 * 120.98046 * 149.45609 * 9 7 2 15 15 H 1.09005 * 109.67911 * 249.16658 * 14 9 7 16 16 C 1.53001 * 109.68508 * 9.68021 * 14 9 7 17 17 C 1.52998 * 109.47135 * 184.43600 * 16 14 9 18 18 F 1.39896 * 109.47260 * 66.26147 * 17 16 14 19 19 F 1.39906 * 109.47013 * 186.25748 * 17 16 14 20 20 H 0.96999 * 119.99858 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.68137 * 350.28509 * 10 9 7 22 22 H 1.09000 * 109.68098 * 110.83670 * 10 9 7 23 23 H 1.08996 * 109.58125 * 187.92398 * 11 10 9 24 24 H 1.08994 * 109.40899 * 67.83782 * 11 10 9 25 25 H 1.09002 * 109.51263 * 177.49891 * 13 12 11 26 26 H 1.08997 * 109.50984 * 57.34035 * 13 12 11 27 27 H 1.09010 * 109.46790 * 304.43534 * 16 14 9 28 28 H 1.08996 * 109.47483 * 64.43049 * 16 14 9 29 29 H 1.08996 * 109.47151 * 306.25655 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0748 -1.2110 -0.1812 9 7 1.3452 -2.3766 0.2314 10 6 0.1568 -2.4164 1.0983 11 6 0.3406 -3.5321 2.1272 12 8 0.6756 -4.7469 1.4520 13 6 1.9083 -4.6945 0.7299 14 6 1.8014 -3.6373 -0.3750 15 1 1.0833 -3.9637 -1.1273 16 6 3.1708 -3.4304 -1.0254 17 6 3.5906 -4.7115 -1.7488 18 9 2.7283 -4.9428 -2.8259 19 9 4.9000 -4.5726 -2.2214 20 1 -0.4850 0.8400 0.0004 21 1 0.0441 -1.4610 1.6107 22 1 -0.7296 -2.6179 0.4969 23 1 -0.5849 -3.6695 2.6863 24 1 1.1440 -3.2635 2.8131 25 1 2.1106 -5.6683 0.2837 26 1 2.7177 -4.4296 1.4102 27 1 3.1126 -2.6109 -1.7419 28 1 3.9054 -3.1896 -0.2570 29 1 3.5413 -5.5523 -1.0569 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306183443.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:48 Heat of formation + Delta-G solvation = -150.507625 kcal Electronic energy + Delta-G solvation = -15979.765731 eV Core-core repulsion = 12959.374929 eV Total energy + Delta-G solvation = -3020.390801 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.86794 -47.88344 -40.16081 -36.63475 -34.78651 -32.64472 -30.00344 -28.40348 -25.45587 -25.13314 -22.77939 -21.34467 -18.82371 -18.48288 -18.11197 -17.31202 -16.95351 -16.77581 -16.23149 -15.54698 -15.39335 -14.96462 -14.81050 -14.65101 -14.25914 -13.77060 -13.53047 -13.06206 -12.84155 -12.74885 -12.45049 -12.13716 -12.02582 -11.92247 -11.61731 -11.25354 -10.67861 -10.57056 -8.68786 -7.90489 -5.42882 1.45472 1.46603 1.55382 2.44370 2.85613 2.99336 3.25903 3.26903 3.61433 3.76553 3.80678 4.08822 4.26292 4.39717 4.46311 4.59388 4.62171 4.72395 4.95472 5.09269 5.10784 5.28209 5.57435 5.61935 6.27723 6.35121 7.06917 7.73928 8.29514 9.15596 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.011885 C = 0.008673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.596569 B = 2355.319186 C = 3227.559946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.050 4.050 3 Si 0.967 3.033 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.261 4.261 8 H 0.079 0.921 9 N -0.608 5.608 10 C 0.147 3.853 11 C 0.049 3.951 12 O -0.400 6.400 13 C 0.049 3.951 14 C 0.135 3.865 15 H 0.021 0.979 16 C -0.153 4.153 17 C 0.265 3.735 18 F -0.220 7.220 19 F -0.215 7.215 20 H 0.250 0.750 21 H 0.066 0.934 22 H -0.003 1.003 23 H 0.106 0.894 24 H 0.050 0.950 25 H 0.119 0.881 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.246 -9.023 1.888 11.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.795 3.205 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.390 4.390 8 H 0.097 0.903 9 N -0.333 5.333 10 C 0.021 3.979 11 C -0.028 4.028 12 O -0.318 6.318 13 C -0.029 4.029 14 C 0.029 3.971 15 H 0.039 0.961 16 C -0.191 4.191 17 C 0.212 3.788 18 F -0.201 7.201 19 F -0.196 7.196 20 H 0.059 0.941 21 H 0.085 0.915 22 H 0.015 0.985 23 H 0.124 0.876 24 H 0.069 0.931 25 H 0.137 0.863 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.044 -9.046 1.858 11.037 hybrid contribution 0.063 1.573 -0.458 1.640 sum 6.107 -7.473 1.400 9.752 Atomic orbital electron populations 1.70154 1.06760 1.25912 1.55420 1.25957 0.96134 1.01665 1.00774 0.85283 0.78226 0.79530 0.77461 1.21478 1.21966 1.18995 1.19494 0.91761 0.84357 1.43433 0.90316 1.44309 1.31997 1.03538 1.53477 1.21178 0.87837 0.97496 0.91349 1.23117 1.00865 0.84784 0.94073 1.87795 1.41185 1.35228 1.67616 1.23281 0.86519 0.99563 0.93505 1.21197 0.93488 0.88388 0.94069 0.96145 1.22592 0.98518 0.96681 1.01302 1.22249 0.71360 1.01131 0.84100 1.92951 1.70859 1.95909 1.60423 1.92950 1.38808 1.97363 1.90496 0.94067 0.91527 0.98468 0.87616 0.93121 0.86324 0.92009 0.91157 0.87731 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.70 11.13 21.65 0.24 -54.46 15 2 C -0.05 -2.71 5.05 84.86 0.43 -2.28 15 3 Si 0.97 43.82 29.57 68.60 2.03 45.84 15 4 H -0.29 -13.05 7.11 99.48 0.71 -12.34 15 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 15 6 H -0.27 -11.33 7.11 99.48 0.71 -10.63 15 7 C -0.26 -13.63 8.58 84.03 0.72 -12.91 15 8 H 0.08 3.89 6.34 -2.91 -0.02 3.87 15 9 N -0.61 -29.59 3.04 -674.55 -2.05 -31.64 15 10 C 0.15 7.04 5.36 86.22 0.46 7.50 15 11 C 0.05 1.84 6.97 71.94 0.50 2.35 15 12 O -0.40 -14.63 10.74 -148.98 -1.60 -16.23 15 13 C 0.05 1.55 5.85 72.08 0.42 1.97 15 14 C 0.13 5.29 3.11 44.97 0.14 5.43 15 15 H 0.02 0.91 7.87 -2.38 -0.02 0.89 15 16 C -0.15 -5.14 3.69 30.59 0.11 -5.03 15 17 C 0.27 7.13 5.18 71.98 0.37 7.50 15 18 F -0.22 -7.05 16.99 44.97 0.76 -6.29 15 19 F -0.21 -6.10 17.34 44.97 0.78 -5.32 15 20 H 0.25 14.20 8.31 -92.71 -0.77 13.43 15 21 H 0.07 3.52 6.31 -2.39 -0.02 3.51 15 22 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 15 23 H 0.11 3.41 8.14 -2.39 -0.02 3.39 15 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.12 2.78 6.87 -2.39 -0.02 2.76 15 26 H 0.06 1.81 8.13 -2.39 -0.02 1.79 15 27 H 0.07 2.80 7.28 -2.38 -0.02 2.78 15 28 H 0.10 3.27 7.84 -2.39 -0.02 3.25 15 29 H 0.15 2.74 6.51 -2.39 -0.02 2.73 15 Total: -1.00 -63.66 243.83 4.47 -59.18 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 1.15 Total: 4.37 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 3.16 Total: 4.54 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -1.81 Total: -86.10 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -1.60 Total: -16.23 kcal Atomic # 9 Polarization: -13.15 SS G_CDS: 1.54 Total: -11.61 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -63.66 4.47 -59.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306183443.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.325 kcal (2) G-P(sol) polarization free energy of solvation -63.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds