Wall clock time and date at job start Mon Mar 30 2020 03:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00063 * 2 1 4 4 H 1.48501 * 109.46580 * 239.99639 * 3 2 1 5 5 H 1.48500 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47159 * 119.99986 * 3 2 1 7 7 C 1.37871 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00274 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00043 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47072 * 179.97438 * 9 7 2 11 11 C 1.38262 * 120.00096 * 179.97438 * 10 9 7 12 12 N 1.32428 * 119.82471 * 354.59183 * 11 10 9 13 13 C 1.31849 * 121.77470 * 179.97438 * 12 11 10 14 14 C 1.38377 * 121.22024 * 359.97438 * 13 12 11 15 15 C 1.38332 * 119.50509 * 0.27340 * 14 13 12 16 16 C 1.39982 * 118.36951 * 359.53300 * 15 14 13 17 17 C 1.47419 * 120.60962 * 180.23970 * 16 15 14 18 18 N 1.34780 * 120.00297 * 5.77316 * 17 16 15 19 19 O 1.21606 * 119.99992 * 185.77513 * 17 16 15 20 20 H 0.97001 * 119.99655 * 0.02562 * 1 2 3 21 21 H 1.08990 * 109.47325 * 59.99590 * 9 7 2 22 22 H 1.09003 * 109.46861 * 299.99088 * 9 7 2 23 23 H 0.97001 * 120.00085 * 359.97438 * 10 9 7 24 24 H 1.08003 * 119.38896 * 179.97438 * 13 12 11 25 25 H 1.07999 * 120.24611 * 179.97438 * 14 13 12 26 26 H 1.08004 * 120.81690 * 179.72303 * 15 14 13 27 27 H 0.96997 * 119.99516 * 0.02562 * 18 17 16 28 28 H 0.96996 * 119.99955 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7420 -4.9163 0.0011 12 7 0.4441 -5.1559 0.1099 13 6 -0.0373 -6.3834 0.1141 14 6 0.7973 -7.4816 0.0039 15 6 2.1629 -7.2910 -0.1073 16 6 2.6531 -5.9798 -0.1141 17 6 4.0991 -5.7196 -0.2356 18 7 4.9511 -6.7400 -0.4581 19 8 4.5232 -4.5844 -0.1350 20 1 -0.4850 0.8401 -0.0004 21 1 0.6245 -2.5571 -0.8895 22 1 0.6240 -2.5567 0.8904 23 1 3.1566 -3.4355 0.0002 24 1 -1.1028 -6.5345 0.2053 25 1 0.3861 -8.4802 0.0095 26 1 2.8342 -8.1330 -0.1900 27 1 4.6128 -7.6455 -0.5387 28 1 5.9024 -6.5687 -0.5384 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306269856.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:03 Heat of formation + Delta-G solvation = -0.003690 kcal Electronic energy + Delta-G solvation = -14394.656241 eV Core-core repulsion = 11831.480967 eV Total energy + Delta-G solvation = -2563.175275 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25719 -38.37415 -35.33614 -33.67979 -32.55836 -31.73995 -29.70561 -26.56942 -24.34762 -23.02615 -21.36404 -20.64099 -17.94581 -17.37459 -16.76021 -15.98957 -15.44721 -14.76412 -14.74238 -14.46206 -13.94054 -13.59617 -13.23259 -12.56094 -12.21030 -12.14308 -11.90872 -10.87204 -10.85466 -10.16402 -9.89463 -9.77816 -9.64538 -9.40272 -9.29973 -8.85451 -8.47524 -6.93014 -6.08936 -4.13953 1.16752 1.92339 3.18619 3.33100 3.36004 3.39734 3.63866 4.19733 4.39601 4.45950 4.91561 4.95580 5.20048 5.27311 5.44391 5.76202 5.89229 6.15683 6.40637 6.82236 6.87735 7.34627 7.38816 7.58964 7.71369 8.01871 8.08771 8.38837 8.45765 8.84992 9.15437 9.51145 11.01348 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.034599 B = 0.007717 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.087050 B = 3627.555198 C = 4417.700684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.668 5.668 11 C 0.455 3.545 12 N -0.541 5.541 13 C 0.190 3.810 14 C -0.280 4.280 15 C 0.007 3.993 16 C -0.302 4.302 17 C 0.578 3.422 18 N -0.856 5.856 19 O -0.546 6.546 20 H 0.265 0.735 21 H 0.028 0.972 22 H 0.031 0.969 23 H 0.420 0.580 24 H 0.153 0.847 25 H 0.128 0.872 26 H 0.125 0.875 27 H 0.398 0.602 28 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.541 -16.427 -0.712 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.127 3.873 10 N -0.298 5.298 11 C 0.211 3.789 12 N -0.259 5.259 13 C 0.024 3.976 14 C -0.304 4.304 15 C -0.019 4.019 16 C -0.315 4.315 17 C 0.367 3.633 18 N -0.419 5.419 19 O -0.425 6.425 20 H 0.075 0.925 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.269 0.731 24 H 0.170 0.830 25 H 0.145 0.855 26 H 0.142 0.858 27 H 0.227 0.773 28 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.918 -14.453 -0.552 14.985 hybrid contribution 1.441 -0.276 -0.156 1.475 sum 5.359 -14.729 -0.708 15.690 Atomic orbital electron populations 1.69968 1.06014 1.27251 1.49354 1.24908 0.94914 0.99302 0.94738 0.86470 0.79413 0.82219 0.78812 1.20062 1.21087 1.20040 1.21241 0.93493 0.90481 1.52741 0.91901 1.19220 0.88332 0.81925 0.97824 1.46514 1.13148 1.01899 1.68288 1.18596 0.87851 0.86465 0.86037 1.67553 1.12964 1.23930 1.21473 1.22690 0.99960 0.86902 0.88005 1.21506 0.93851 1.00069 1.14976 1.21255 0.95655 0.94458 0.90573 1.19871 0.92955 0.94432 1.24212 1.18022 0.86079 0.84407 0.74752 1.43614 1.10692 1.10309 1.77304 1.90539 1.78306 1.21697 1.51945 0.92526 0.95428 0.95082 0.73125 0.82976 0.85453 0.85756 0.77341 0.76849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.07 15 2 C 0.06 1.88 5.46 -17.82 -0.10 1.78 15 3 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 15 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 15 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 7 C -0.54 -15.91 9.28 -34.44 -0.32 -16.23 15 8 H 0.06 1.82 7.60 -52.48 -0.40 1.42 15 9 C 0.25 6.96 5.44 -5.19 -0.03 6.94 15 10 N -0.67 -16.42 5.56 -61.40 -0.34 -16.76 15 11 C 0.46 9.74 7.48 -155.19 -1.16 8.58 15 12 N -0.54 -11.15 9.55 -12.20 -0.12 -11.26 15 13 C 0.19 2.91 11.16 -17.49 -0.20 2.71 15 14 C -0.28 -3.50 10.09 -39.50 -0.40 -3.90 15 15 C 0.01 0.09 9.63 -38.89 -0.37 -0.29 15 16 C -0.30 -5.18 5.91 -104.65 -0.62 -5.80 15 17 C 0.58 9.57 8.03 -12.52 -0.10 9.47 15 18 N -0.86 -9.01 8.83 30.43 0.27 -8.74 15 19 O -0.55 -11.34 14.51 5.27 0.08 -11.27 15 20 H 0.27 7.50 8.31 -40.82 -0.34 7.16 15 21 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.03 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.42 10.40 4.82 -40.92 -0.20 10.21 15 24 H 0.15 1.81 8.06 -52.48 -0.42 1.39 15 25 H 0.13 1.15 8.06 -52.49 -0.42 0.72 15 26 H 0.12 1.02 6.55 -52.48 -0.34 0.68 15 27 H 0.40 2.83 6.96 -40.82 -0.28 2.55 15 28 H 0.40 3.59 8.93 -40.82 -0.36 3.23 15 LS Contribution 250.64 15.07 3.78 3.78 Total: -1.00 -34.27 250.64 -6.33 -40.60 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -2.41 Total: 9.44 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -3.29 Total: 3.25 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: 0.55 Total: -62.83 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -34.27 -6.33 -40.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306269856.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.593 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds