Wall clock time and date at job start Mon Mar 30 2020 03:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00063 * 2 1 4 4 H 1.48501 * 109.46580 * 239.99639 * 3 2 1 5 5 H 1.48500 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47159 * 119.99986 * 3 2 1 7 7 C 1.37871 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00274 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00043 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47072 * 179.97438 * 9 7 2 11 11 C 1.38262 * 120.00096 * 179.97438 * 10 9 7 12 12 N 1.32428 * 119.82471 * 354.59183 * 11 10 9 13 13 C 1.31849 * 121.77470 * 179.97438 * 12 11 10 14 14 C 1.38377 * 121.22024 * 359.97438 * 13 12 11 15 15 C 1.38332 * 119.50509 * 0.27340 * 14 13 12 16 16 C 1.39982 * 118.36951 * 359.53300 * 15 14 13 17 17 C 1.47419 * 120.60962 * 180.23970 * 16 15 14 18 18 N 1.34780 * 120.00297 * 5.77316 * 17 16 15 19 19 O 1.21606 * 119.99992 * 185.77513 * 17 16 15 20 20 H 0.97001 * 119.99655 * 0.02562 * 1 2 3 21 21 H 1.08990 * 109.47325 * 59.99590 * 9 7 2 22 22 H 1.09003 * 109.46861 * 299.99088 * 9 7 2 23 23 H 0.97001 * 120.00085 * 359.97438 * 10 9 7 24 24 H 1.08003 * 119.38896 * 179.97438 * 13 12 11 25 25 H 1.07999 * 120.24611 * 179.97438 * 14 13 12 26 26 H 1.08004 * 120.81690 * 179.72303 * 15 14 13 27 27 H 0.96997 * 119.99516 * 0.02562 * 18 17 16 28 28 H 0.96996 * 119.99955 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7420 -4.9163 0.0011 12 7 0.4441 -5.1559 0.1099 13 6 -0.0373 -6.3834 0.1141 14 6 0.7973 -7.4816 0.0039 15 6 2.1629 -7.2910 -0.1073 16 6 2.6531 -5.9798 -0.1141 17 6 4.0991 -5.7196 -0.2356 18 7 4.9511 -6.7400 -0.4581 19 8 4.5232 -4.5844 -0.1350 20 1 -0.4850 0.8401 -0.0004 21 1 0.6245 -2.5571 -0.8895 22 1 0.6240 -2.5567 0.8904 23 1 3.1566 -3.4355 0.0002 24 1 -1.1028 -6.5345 0.2053 25 1 0.3861 -8.4802 0.0095 26 1 2.8342 -8.1330 -0.1900 27 1 4.6128 -7.6455 -0.5387 28 1 5.9024 -6.5687 -0.5384 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306269856.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:03 Heat of formation + Delta-G solvation = -28.319975 kcal Electronic energy + Delta-G solvation = -14395.884128 eV Core-core repulsion = 11831.480967 eV Total energy + Delta-G solvation = -2564.403161 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.58394 -39.68527 -37.01675 -35.05453 -34.53317 -32.96116 -31.29856 -28.50639 -25.61363 -24.90548 -22.89985 -21.96115 -19.34440 -18.84365 -18.03083 -17.79383 -17.00383 -16.38637 -16.10381 -15.89555 -15.33790 -15.17965 -14.85113 -14.06900 -14.00148 -13.77173 -13.37360 -12.83416 -12.77768 -12.22639 -11.53702 -11.29103 -11.16854 -10.85620 -10.67825 -10.60010 -10.21231 -8.53041 -8.31719 -6.47295 -0.06764 0.67224 1.36722 1.41761 1.50166 1.92099 2.31961 2.52837 2.75979 3.00653 3.09464 3.74219 3.91112 4.05410 4.25592 4.54170 4.77403 5.00968 5.09375 5.27007 5.29147 5.48945 5.78190 5.80882 5.90712 6.34017 6.45224 6.67279 6.77383 7.22269 7.31012 7.57136 8.79967 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.034599 B = 0.007717 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.087050 B = 3627.555198 C = 4417.700684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.567 4.567 8 H 0.061 0.939 9 C 0.278 3.722 10 N -0.698 5.698 11 C 0.419 3.581 12 N -0.593 5.593 13 C 0.168 3.832 14 C -0.247 4.247 15 C 0.018 3.982 16 C -0.307 4.307 17 C 0.572 3.428 18 N -0.821 5.821 19 O -0.596 6.596 20 H 0.271 0.729 21 H -0.010 1.010 22 H -0.006 1.006 23 H 0.416 0.584 24 H 0.181 0.819 25 H 0.181 0.819 26 H 0.184 0.816 27 H 0.419 0.581 28 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.609 -19.206 -0.902 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.605 4.605 8 H 0.079 0.921 9 C 0.155 3.845 10 N -0.334 5.334 11 C 0.178 3.822 12 N -0.312 5.312 13 C 0.006 3.994 14 C -0.270 4.270 15 C -0.008 4.008 16 C -0.319 4.319 17 C 0.360 3.640 18 N -0.385 5.385 19 O -0.478 6.478 20 H 0.080 0.920 21 H 0.008 0.992 22 H 0.012 0.988 23 H 0.264 0.736 24 H 0.198 0.802 25 H 0.198 0.802 26 H 0.201 0.799 27 H 0.252 0.748 28 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.969 -17.399 -0.750 18.110 hybrid contribution 1.040 0.248 -0.104 1.074 sum 6.009 -17.150 -0.854 18.193 Atomic orbital electron populations 1.70099 1.07774 1.28628 1.49584 1.25950 0.95909 1.03363 0.93617 0.85277 0.78140 0.76970 0.79247 1.19140 1.19752 1.19133 1.21555 0.93584 0.91708 1.53614 0.92120 1.18490 0.88241 0.83587 0.94196 1.46129 1.11822 1.02501 1.72932 1.18999 0.89238 0.86208 0.87717 1.67453 1.13402 1.27298 1.23049 1.23381 1.02046 0.86245 0.87725 1.22111 0.93392 1.01338 1.10114 1.21910 0.96876 0.93886 0.88087 1.20125 0.92938 0.95203 1.23647 1.18113 0.86493 0.84651 0.74702 1.43277 1.10647 1.10011 1.74602 1.90514 1.78893 1.24058 1.54378 0.92019 0.99182 0.98831 0.73648 0.80185 0.80154 0.79894 0.74837 0.75459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.95 13.29 21.45 0.28 -57.67 15 2 C 0.01 0.70 5.46 84.65 0.46 1.16 15 3 Si 0.98 46.23 29.54 68.60 2.03 48.26 15 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 5 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 15 7 C -0.57 -35.29 9.28 25.60 0.24 -35.05 15 8 H 0.06 3.70 7.60 -2.91 -0.02 3.68 15 9 C 0.28 16.96 5.44 85.63 0.47 17.43 15 10 N -0.70 -36.95 5.56 -348.18 -1.94 -38.88 15 11 C 0.42 18.67 7.48 133.65 1.00 19.67 15 12 N -0.59 -25.34 9.55 -192.51 -1.84 -27.18 15 13 C 0.17 4.86 11.16 84.72 0.95 5.81 15 14 C -0.25 -4.97 10.09 22.33 0.23 -4.74 15 15 C 0.02 0.38 9.63 22.72 0.22 0.60 15 16 C -0.31 -10.19 5.91 -19.88 -0.12 -10.30 15 17 C 0.57 18.35 8.03 86.66 0.70 19.04 15 18 N -0.82 -14.52 8.83 -175.89 -1.55 -16.08 15 19 O -0.60 -25.45 14.51 -4.05 -0.06 -25.50 15 20 H 0.27 15.74 8.31 -92.71 -0.77 14.97 15 21 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 15 22 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 15 23 H 0.42 22.13 4.82 -94.29 -0.45 21.67 15 24 H 0.18 3.92 8.06 -2.91 -0.02 3.90 15 25 H 0.18 1.85 8.06 -2.91 -0.02 1.83 15 26 H 0.18 1.62 6.55 -2.91 -0.02 1.60 15 27 H 0.42 3.75 6.96 -92.71 -0.65 3.11 15 28 H 0.41 6.13 8.93 -92.71 -0.83 5.30 15 Total: -1.00 -83.16 250.64 0.35 -82.81 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -0.70 Total: 20.63 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 4.13 Total: 13.61 kcal Atomic # 7 Polarization: -134.77 SS G_CDS: -5.04 Total: -139.81 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.06 Total: -25.50 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -83.16 0.35 -82.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306269856.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.493 kcal (2) G-P(sol) polarization free energy of solvation -83.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds