Wall clock time and date at job start Mon Mar 30 2020 03:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86802 * 119.99878 * 2 1 4 4 H 1.48496 * 109.47204 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47336 * 300.00790 * 3 2 1 6 6 H 1.48503 * 109.47194 * 60.00250 * 3 2 1 7 7 C 1.38852 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99883 * 180.02562 * 7 2 1 9 9 N 1.36695 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.38368 * 119.99911 * 180.02562 * 9 7 2 11 11 N 1.31855 * 120.45895 * 359.97438 * 10 9 7 12 12 C 1.33070 * 120.73215 * 180.02562 * 11 10 9 13 13 C 1.35217 * 121.73141 * 0.26193 * 12 11 10 14 14 N 1.36289 * 120.88981 * 359.48222 * 13 12 11 15 15 C 1.46493 * 120.43299 * 180.25905 * 14 13 12 16 16 C 1.53001 * 117.49824 * 8.99390 * 15 14 13 17 17 C 1.53008 * 117.49739 * 300.33572 * 15 14 13 18 18 C 1.35182 * 119.14163 * 0.49767 * 14 13 12 19 19 O 1.21907 * 120.78705 * 179.77639 * 18 14 13 20 20 H 0.96995 * 120.00455 * 359.97438 * 1 2 3 21 21 H 0.97003 * 120.00293 * 0.02562 * 9 7 2 22 22 H 1.08002 * 119.13071 * 179.97438 * 12 11 10 23 23 H 1.07998 * 119.55624 * 179.73789 * 13 12 11 24 24 H 1.09007 * 115.55303 * 154.66507 * 15 14 13 25 25 H 1.08997 * 117.49935 * 359.97438 * 16 15 14 26 26 H 1.09001 * 117.50066 * 145.02228 * 16 15 14 27 27 H 1.09001 * 117.49792 * 214.98277 * 17 15 14 28 28 H 1.09004 * 117.49416 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8905 2.3965 1.2125 7 6 2.0096 -1.2024 -0.0005 8 1 3.0896 -1.2023 -0.0001 9 7 1.3262 -2.3863 -0.0005 10 6 2.0181 -3.5846 -0.0005 11 7 3.3366 -3.5950 -0.0010 12 6 4.0075 -4.7442 -0.0016 13 6 3.3729 -5.9382 -0.0068 14 7 2.0117 -6.0071 -0.0013 15 6 1.3346 -7.3062 -0.0014 16 6 2.1975 -8.5527 0.2044 17 6 1.6109 -8.2468 -1.1761 18 6 1.2946 -4.8613 -0.0006 19 8 0.0758 -4.8879 0.0002 20 1 -0.4850 0.8400 0.0004 21 1 0.3561 -2.3864 -0.0005 22 1 5.0873 -4.7226 -0.0024 23 1 3.9524 -6.8495 -0.0114 24 1 0.3308 -7.3132 0.4236 25 1 3.2691 -8.4063 0.3393 26 1 1.7614 -9.3800 0.7644 27 1 0.7891 -8.8729 -1.5237 28 1 2.2963 -7.8988 -1.9490 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306292063.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:43 Heat of formation + Delta-G solvation = 40.884596 kcal Electronic energy + Delta-G solvation = -14538.137495 eV Core-core repulsion = 11976.735269 eV Total energy + Delta-G solvation = -2561.402225 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.36485 -37.31174 -36.35519 -35.34064 -32.68481 -31.39803 -28.13532 -25.66924 -23.72924 -22.66778 -21.98791 -20.70373 -18.53573 -17.38656 -16.74379 -16.19116 -15.11395 -14.88279 -14.56433 -14.38462 -13.66743 -13.16670 -13.05663 -12.15827 -11.87499 -11.81729 -11.63255 -11.34217 -11.24033 -10.74776 -10.51563 -10.48460 -10.33969 -10.01002 -9.30892 -8.53135 -7.86888 -6.86495 -6.48966 -3.87964 1.90744 2.89707 3.06961 3.07930 3.14040 3.23854 3.87093 3.90516 4.55586 4.75667 4.80577 4.97522 5.03754 5.20898 5.37138 5.50252 5.69852 5.91921 6.01990 6.06368 6.15084 6.67035 6.89231 7.17384 7.43605 7.58287 7.91019 8.44194 8.68972 8.96335 9.05310 9.70050 10.26417 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.058341 B = 0.007032 C = 0.006391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.819965 B = 3980.907841 C = 4379.959453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.020 3.980 3 Si 0.947 3.053 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.266 4.266 8 H 0.126 0.874 9 N -0.466 5.466 10 C 0.268 3.732 11 N -0.583 5.583 12 C 0.092 3.908 13 C -0.153 4.153 14 N -0.457 5.457 15 C 0.072 3.928 16 C -0.181 4.181 17 C -0.188 4.188 18 C 0.497 3.503 19 O -0.566 6.566 20 H 0.284 0.716 21 H 0.415 0.585 22 H 0.141 0.859 23 H 0.132 0.868 24 H 0.134 0.866 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 -9.365 -0.260 10.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.399 4.399 8 H 0.144 0.856 9 N -0.072 5.072 10 C 0.008 3.992 11 N -0.321 5.321 12 C -0.053 4.053 13 C -0.280 4.280 14 N -0.176 5.176 15 C -0.033 4.033 16 C -0.219 4.219 17 C -0.226 4.226 18 C 0.288 3.712 19 O -0.446 6.446 20 H 0.094 0.906 21 H 0.252 0.748 22 H 0.158 0.842 23 H 0.149 0.851 24 H 0.152 0.848 25 H 0.123 0.877 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.955 -8.323 -0.251 9.219 hybrid contribution -0.442 -0.190 -0.023 0.481 sum 3.513 -8.513 -0.274 9.214 Atomic orbital electron populations 1.69707 1.06482 1.29771 1.43791 1.25722 0.95886 1.01036 0.96162 0.85515 0.79872 0.79245 0.78193 1.18340 1.20161 1.20155 1.20328 0.94616 0.81282 1.43719 0.85629 1.40791 1.09140 1.01777 1.55471 1.20647 0.89129 0.84930 1.04491 1.67502 1.04620 1.27785 1.32159 1.21084 0.98777 0.86256 0.99205 1.21242 0.82402 0.99708 1.24606 1.43824 1.06031 1.04679 1.63029 1.21734 0.98057 0.79872 1.03595 1.23367 1.00518 0.98172 0.99824 1.23395 1.03868 1.03058 0.92289 1.19222 0.87403 0.84796 0.79798 1.90811 1.12842 1.87163 1.53748 0.90626 0.74770 0.84209 0.85086 0.84807 0.87722 0.87959 0.88128 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.49 13.05 55.49 0.72 -21.77 15 2 C 0.02 0.50 5.50 -17.46 -0.10 0.41 15 3 Si 0.95 19.28 29.55 -169.99 -5.02 14.26 15 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 15 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 6 H -0.28 -5.55 7.11 56.52 0.40 -5.14 15 7 C -0.27 -6.97 9.70 -15.16 -0.15 -7.11 15 8 H 0.13 3.29 7.11 -52.48 -0.37 2.92 15 9 N -0.47 -12.30 5.40 -9.45 -0.05 -12.36 15 10 C 0.27 6.75 7.67 -153.00 -1.17 5.57 15 11 N -0.58 -13.92 9.23 -11.09 -0.10 -14.03 15 12 C 0.09 1.82 11.03 -18.09 -0.20 1.63 15 13 C -0.15 -2.77 9.89 -16.65 -0.16 -2.93 15 14 N -0.46 -9.08 2.96 -110.29 -0.33 -9.41 15 15 C 0.07 1.15 6.25 -67.93 -0.42 0.73 15 16 C -0.18 -2.13 9.82 -26.69 -0.26 -2.39 15 17 C -0.19 -2.40 10.28 -26.69 -0.27 -2.67 15 18 C 0.50 11.86 7.66 -12.64 -0.10 11.77 15 19 O -0.57 -14.50 16.45 5.00 0.08 -14.41 15 20 H 0.28 6.82 8.31 -40.82 -0.34 6.48 15 21 H 0.41 11.24 7.47 -40.82 -0.30 10.94 15 22 H 0.14 2.27 8.06 -52.49 -0.42 1.85 15 23 H 0.13 1.91 5.90 -52.49 -0.31 1.60 15 24 H 0.13 2.19 7.73 -51.92 -0.40 1.79 15 25 H 0.10 1.18 6.11 -51.93 -0.32 0.86 15 26 H 0.10 0.98 8.14 -51.93 -0.42 0.55 15 27 H 0.10 1.09 8.14 -51.93 -0.42 0.67 15 28 H 0.10 1.32 8.14 -51.93 -0.42 0.90 15 LS Contribution 250.87 15.07 3.78 3.78 Total: -1.00 -29.19 250.87 -6.29 -35.48 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -2.53 Total: 13.47 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -2.84 Total: 4.99 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.24 Total: -57.56 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.08 Total: -14.41 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.19 -6.29 -35.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306292063.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.362 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds