Wall clock time and date at job start Mon Mar 30 2020 03:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99892 * 2 1 4 4 H 1.48504 * 109.47178 * 93.08405 * 3 2 1 5 5 H 1.48497 * 109.47034 * 213.08471 * 3 2 1 6 6 H 1.48506 * 109.47102 * 333.08711 * 3 2 1 7 7 C 1.38810 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 18.93377 * 7 2 1 9 9 N 1.36931 * 119.99912 * 198.93315 * 7 2 1 10 10 C 1.46935 * 120.62907 * 209.44165 * 9 7 2 11 11 C 1.52757 * 109.00589 * 233.58301 * 10 9 7 12 12 C 1.53044 * 109.38597 * 305.58660 * 11 10 9 13 13 C 1.53042 * 109.53694 * 61.23717 * 12 11 10 14 14 H 1.09000 * 109.49478 * 58.58979 * 13 12 11 15 15 O 1.42899 * 109.52230 * 178.67076 * 13 12 11 16 16 C 1.42902 * 114.00056 * 209.85667 * 15 13 12 17 17 F 1.39904 * 109.47176 * 300.00283 * 16 15 13 18 18 F 1.39902 * 109.47089 * 59.99610 * 16 15 13 19 19 C 1.46923 * 120.63414 * 29.71605 * 9 7 2 20 20 H 0.96997 * 119.99976 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.58374 * 353.41436 * 10 9 7 22 22 H 1.08998 * 109.58718 * 113.84259 * 10 9 7 23 23 H 1.08998 * 109.56712 * 185.55103 * 11 10 9 24 24 H 1.08998 * 109.38768 * 65.51066 * 11 10 9 25 25 H 1.08998 * 109.45504 * 301.22188 * 12 11 10 26 26 H 1.08995 * 109.45192 * 181.25377 * 12 11 10 27 27 H 1.08995 * 109.47472 * 180.02562 * 16 15 13 28 28 H 1.09003 * 109.58776 * 246.15969 * 19 9 7 29 29 H 1.08998 * 109.58571 * 6.44278 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5629 2.0088 1.3981 5 1 3.5136 1.4599 -0.7643 6 1 1.4165 2.6707 -0.6337 7 6 2.0103 -1.2021 -0.0005 8 1 1.5141 -2.1120 -0.3044 9 7 3.3241 -1.2343 0.3842 10 6 4.2428 -2.2369 -0.1723 11 6 4.9214 -2.9815 0.9759 12 6 5.5863 -1.9714 1.9139 13 6 4.5224 -1.0410 2.5010 14 1 3.7795 -1.6309 3.0380 15 8 5.1393 -0.1178 3.4006 16 6 4.2889 0.3127 4.4653 17 9 3.1602 0.9458 3.9338 18 9 3.8897 -0.7953 5.2204 19 6 3.8405 -0.2708 1.3659 20 1 -0.4850 0.8400 -0.0004 21 1 3.6840 -2.9442 -0.7850 22 1 4.9994 -1.7414 -0.7807 23 1 5.6764 -3.6585 0.5763 24 1 4.1752 -3.5535 1.5273 25 1 6.3151 -1.3833 1.3562 26 1 6.0897 -2.5027 2.7214 27 1 4.8304 1.0114 5.1029 28 1 4.5637 0.3883 0.8855 29 1 3.0167 0.3203 1.7659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306395699.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:55 Heat of formation + Delta-G solvation = -138.979764 kcal Electronic energy + Delta-G solvation = -16273.962828 eV Core-core repulsion = 13254.071912 eV Total energy + Delta-G solvation = -3019.890916 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.78415 -46.88887 -38.58809 -36.24297 -32.96303 -30.76418 -29.78117 -25.35429 -25.23929 -22.66873 -21.79738 -19.62156 -18.00881 -17.50704 -17.42045 -16.77901 -15.51960 -14.44481 -14.30903 -13.95280 -13.80097 -13.38617 -13.26230 -13.23093 -12.65085 -12.39328 -12.25150 -12.03196 -11.67686 -11.32168 -10.70970 -10.67353 -10.53569 -10.14277 -9.94735 -9.63934 -9.40392 -8.57048 -6.97914 -5.95652 -3.35374 3.24594 3.38721 3.50026 3.53417 3.91917 4.54795 4.71531 4.96917 5.02813 5.24329 5.25747 5.47285 5.51090 5.70196 5.79378 6.07515 6.22320 6.25101 6.36904 6.45525 6.63409 6.66888 6.80243 7.02533 7.96559 8.32968 8.91920 9.70566 10.07666 11.19937 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.014847 C = 0.010906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.201185 B = 1885.468755 C = 2566.852509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.029 3.971 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.272 1.272 6 H -0.302 1.302 7 C -0.267 4.267 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.143 3.857 11 C -0.134 4.134 12 C -0.104 4.104 13 C 0.059 3.941 14 H 0.075 0.925 15 O -0.389 6.389 16 C 0.402 3.598 17 F -0.202 7.202 18 F -0.212 7.212 19 C 0.105 3.895 20 H 0.264 0.736 21 H 0.066 0.934 22 H 0.025 0.975 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.160 0.840 28 H 0.032 0.968 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.192 -0.902 7.347 13.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.171 4.171 3 Si 0.708 3.292 4 H -0.205 1.205 5 H -0.198 1.198 6 H -0.230 1.230 7 C -0.395 4.395 8 H 0.104 0.896 9 N -0.326 5.326 10 C 0.018 3.982 11 C -0.173 4.173 12 C -0.141 4.141 13 C 0.001 3.999 14 H 0.094 0.906 15 O -0.310 6.310 16 C 0.310 3.690 17 F -0.184 7.184 18 F -0.195 7.195 19 C -0.021 4.021 20 H 0.073 0.927 21 H 0.085 0.915 22 H 0.043 0.957 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.177 0.823 28 H 0.050 0.950 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.166 -0.765 7.299 13.362 hybrid contribution 0.062 0.914 0.140 0.927 sum 11.228 0.149 7.440 13.470 Atomic orbital electron populations 1.69818 1.05730 1.26707 1.52528 1.25325 0.95248 0.97700 0.98841 0.87043 0.79722 0.84521 0.77916 1.20478 1.19767 1.22976 1.18898 0.84050 0.94670 1.41862 0.89561 1.44283 1.07901 1.35803 1.44631 1.20937 0.92475 0.91543 0.93264 1.21968 0.99602 0.97522 0.98187 1.21468 0.97152 0.96678 0.98828 1.23159 0.95565 0.90549 0.90603 0.90646 1.88324 1.39775 1.63983 1.38881 1.23069 0.79647 0.82257 0.84032 1.93134 1.55873 1.82073 1.87282 1.93034 1.92090 1.57629 1.76708 1.21991 0.97898 0.92651 0.89531 0.92656 0.91507 0.95721 0.91726 0.91747 0.91528 0.92197 0.82327 0.95026 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.28 13.97 55.49 0.78 -27.50 15 2 C 0.03 0.85 5.24 -17.43 -0.09 0.76 15 3 Si 0.88 23.11 24.36 -169.99 -4.14 18.97 15 4 H -0.28 -7.12 6.40 56.52 0.36 -6.76 15 5 H -0.27 -7.08 6.94 56.52 0.39 -6.69 15 6 H -0.30 -7.97 7.11 56.52 0.40 -7.57 15 7 C -0.27 -7.64 10.02 -15.06 -0.15 -7.79 15 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 15 9 N -0.60 -14.76 2.75 -172.58 -0.47 -15.23 15 10 C 0.14 2.85 6.49 -3.93 -0.03 2.82 15 11 C -0.13 -2.18 6.06 -26.83 -0.16 -2.35 15 12 C -0.10 -1.70 5.54 -26.69 -0.15 -1.84 15 13 C 0.06 1.15 2.55 -26.61 -0.07 1.08 15 14 H 0.08 1.55 7.20 -51.93 -0.37 1.17 15 15 O -0.39 -6.71 10.30 -35.23 -0.36 -7.07 15 16 C 0.40 6.08 6.26 101.05 0.63 6.71 15 17 F -0.20 -3.84 15.55 2.25 0.04 -3.81 15 18 F -0.21 -3.40 16.63 2.25 0.04 -3.36 15 19 C 0.11 2.44 3.60 -3.71 -0.01 2.43 15 20 H 0.26 7.82 8.31 -40.82 -0.34 7.48 15 21 H 0.07 1.30 7.93 -51.93 -0.41 0.89 15 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 15 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.06 1.10 8.14 -51.93 -0.42 0.67 15 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.16 1.52 8.14 -51.93 -0.42 1.10 15 28 H 0.03 0.74 7.21 -51.93 -0.37 0.36 15 29 H 0.09 2.21 3.08 -51.93 -0.16 2.05 15 LS Contribution 240.41 15.07 3.62 3.62 Total: -1.00 -32.11 240.41 -4.00 -36.11 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: -3.46 Total: -3.55 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.03 Total: 1.82 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.30 Total: -42.73 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.36 Total: -7.07 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 0.07 Total: -7.17 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.14 Total: 18.97 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -32.11 -4.00 -36.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306395699.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.870 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds