Wall clock time and date at job start Mon Mar 30 2020 03:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99892 * 2 1 4 4 H 1.48504 * 109.47178 * 93.08405 * 3 2 1 5 5 H 1.48497 * 109.47034 * 213.08471 * 3 2 1 6 6 H 1.48506 * 109.47102 * 333.08711 * 3 2 1 7 7 C 1.38810 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 18.93377 * 7 2 1 9 9 N 1.36931 * 119.99912 * 198.93315 * 7 2 1 10 10 C 1.46935 * 120.62907 * 209.44165 * 9 7 2 11 11 C 1.52757 * 109.00589 * 233.58301 * 10 9 7 12 12 C 1.53044 * 109.38597 * 305.58660 * 11 10 9 13 13 C 1.53042 * 109.53694 * 61.23717 * 12 11 10 14 14 H 1.09000 * 109.49478 * 58.58979 * 13 12 11 15 15 O 1.42899 * 109.52230 * 178.67076 * 13 12 11 16 16 C 1.42902 * 114.00056 * 209.85667 * 15 13 12 17 17 F 1.39904 * 109.47176 * 300.00283 * 16 15 13 18 18 F 1.39902 * 109.47089 * 59.99610 * 16 15 13 19 19 C 1.46923 * 120.63414 * 29.71605 * 9 7 2 20 20 H 0.96997 * 119.99976 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.58374 * 353.41436 * 10 9 7 22 22 H 1.08998 * 109.58718 * 113.84259 * 10 9 7 23 23 H 1.08998 * 109.56712 * 185.55103 * 11 10 9 24 24 H 1.08998 * 109.38768 * 65.51066 * 11 10 9 25 25 H 1.08998 * 109.45504 * 301.22188 * 12 11 10 26 26 H 1.08995 * 109.45192 * 181.25377 * 12 11 10 27 27 H 1.08995 * 109.47472 * 180.02562 * 16 15 13 28 28 H 1.09003 * 109.58776 * 246.15969 * 19 9 7 29 29 H 1.08998 * 109.58571 * 6.44278 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5629 2.0088 1.3981 5 1 3.5136 1.4599 -0.7643 6 1 1.4165 2.6707 -0.6337 7 6 2.0103 -1.2021 -0.0005 8 1 1.5141 -2.1120 -0.3044 9 7 3.3241 -1.2343 0.3842 10 6 4.2428 -2.2369 -0.1723 11 6 4.9214 -2.9815 0.9759 12 6 5.5863 -1.9714 1.9139 13 6 4.5224 -1.0410 2.5010 14 1 3.7795 -1.6309 3.0380 15 8 5.1393 -0.1178 3.4006 16 6 4.2889 0.3127 4.4653 17 9 3.1602 0.9458 3.9338 18 9 3.8897 -0.7953 5.2204 19 6 3.8405 -0.2708 1.3659 20 1 -0.4850 0.8400 -0.0004 21 1 3.6840 -2.9442 -0.7850 22 1 4.9994 -1.7414 -0.7807 23 1 5.6764 -3.6585 0.5763 24 1 4.1752 -3.5535 1.5273 25 1 6.3151 -1.3833 1.3562 26 1 6.0897 -2.5027 2.7214 27 1 4.8304 1.0114 5.1029 28 1 4.5637 0.3883 0.8855 29 1 3.0167 0.3203 1.7659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306395699.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:54 Heat of formation + Delta-G solvation = -162.154600 kcal Electronic energy + Delta-G solvation = -16274.967764 eV Core-core repulsion = 13254.071912 eV Total energy + Delta-G solvation = -3020.895852 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.06142 -48.19061 -40.11160 -37.78953 -34.85798 -32.70889 -31.33810 -27.26451 -26.53321 -24.33201 -23.44336 -21.20143 -19.36503 -18.96524 -18.76795 -18.58648 -17.36213 -16.08496 -15.87842 -15.58293 -15.40241 -14.88926 -14.79387 -14.66213 -14.47226 -13.92318 -13.71895 -13.61828 -13.14405 -13.06301 -12.58322 -12.41173 -12.00931 -11.72842 -11.66015 -11.59723 -11.24954 -10.64501 -8.98115 -8.23340 -5.58550 1.28738 1.34105 1.43746 2.00975 2.36639 2.71664 3.02911 3.31663 3.62804 3.71007 3.84983 3.98768 4.06890 4.23162 4.30983 4.58686 4.71499 4.78063 4.91712 5.00125 5.10574 5.15938 5.38277 5.57376 5.84309 6.07751 6.85012 7.54456 7.95623 8.96131 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.014847 C = 0.010906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.201185 B = 1885.468755 C = 2566.852509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.029 4.029 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.265 1.265 6 H -0.305 1.305 7 C -0.255 4.255 8 H 0.057 0.943 9 N -0.617 5.617 10 C 0.134 3.866 11 C -0.124 4.124 12 C -0.099 4.099 13 C 0.066 3.934 14 H 0.057 0.943 15 O -0.385 6.385 16 C 0.391 3.609 17 F -0.228 7.228 18 F -0.219 7.219 19 C 0.102 3.898 20 H 0.263 0.737 21 H 0.061 0.939 22 H 0.040 0.960 23 H 0.106 0.894 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.223 0.777 28 H 0.035 0.965 29 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.053 -0.866 8.202 16.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.224 4.224 3 Si 0.767 3.233 4 H -0.196 1.196 5 H -0.190 1.190 6 H -0.234 1.234 7 C -0.385 4.385 8 H 0.075 0.925 9 N -0.343 5.343 10 C 0.010 3.990 11 C -0.163 4.163 12 C -0.136 4.136 13 C 0.008 3.992 14 H 0.075 0.925 15 O -0.306 6.306 16 C 0.300 3.700 17 F -0.210 7.210 18 F -0.201 7.201 19 C -0.024 4.024 20 H 0.072 0.928 21 H 0.080 0.920 22 H 0.058 0.942 23 H 0.124 0.876 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.239 0.761 28 H 0.052 0.948 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.079 -0.747 8.165 16.293 hybrid contribution -0.814 0.817 -0.098 1.157 sum 13.266 0.070 8.067 15.526 Atomic orbital electron populations 1.69939 1.07266 1.27306 1.55259 1.25937 0.95853 1.00894 0.99724 0.86066 0.78496 0.80583 0.78203 1.19616 1.18952 1.23382 1.18876 0.85976 0.93503 1.40120 0.92533 1.44433 1.07157 1.37027 1.45724 1.21200 0.92091 0.90785 0.94916 1.21880 1.00123 0.97559 0.96700 1.21496 0.96260 0.96228 0.99637 1.22866 0.96336 0.90459 0.89582 0.92464 1.88324 1.39748 1.63498 1.39034 1.24125 0.79084 0.82786 0.83975 1.93085 1.57614 1.82531 1.87816 1.93019 1.92211 1.58276 1.76610 1.21949 0.97162 0.92706 0.90545 0.92834 0.92013 0.94197 0.87567 0.92838 0.90410 0.89340 0.76076 0.94759 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.39 13.97 21.65 0.30 -61.09 15 2 C -0.03 -1.73 5.24 84.86 0.44 -1.28 15 3 Si 0.94 48.49 24.36 68.60 1.67 50.16 15 4 H -0.27 -13.46 6.40 99.48 0.64 -12.83 15 5 H -0.26 -13.17 6.94 99.48 0.69 -12.48 15 6 H -0.31 -15.78 7.11 99.48 0.71 -15.08 15 7 C -0.26 -14.92 10.02 84.03 0.84 -14.08 15 8 H 0.06 3.56 8.06 -2.91 -0.02 3.54 15 9 N -0.62 -29.95 2.75 -699.93 -1.92 -31.88 15 10 C 0.13 5.07 6.49 86.22 0.56 5.63 15 11 C -0.12 -3.63 6.06 30.53 0.19 -3.45 15 12 C -0.10 -2.84 5.54 30.62 0.17 -2.67 15 13 C 0.07 2.41 2.55 30.67 0.08 2.48 15 14 H 0.06 2.28 7.20 -2.39 -0.02 2.27 15 15 O -0.39 -12.10 10.30 -148.98 -1.53 -13.63 15 16 C 0.39 10.74 6.26 113.37 0.71 11.45 15 17 F -0.23 -8.43 15.55 44.97 0.70 -7.73 15 18 F -0.22 -6.55 16.63 44.97 0.75 -5.80 15 19 C 0.10 4.60 3.60 86.36 0.31 4.91 15 20 H 0.26 16.10 8.31 -92.71 -0.77 15.33 15 21 H 0.06 2.35 7.93 -2.39 -0.02 2.33 15 22 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 23 H 0.11 2.29 8.14 -2.39 -0.02 2.27 15 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 15 25 H 0.08 2.11 8.14 -2.39 -0.02 2.09 15 26 H 0.09 2.11 8.14 -2.39 -0.02 2.09 15 27 H 0.22 3.22 8.14 -2.39 -0.02 3.20 15 28 H 0.03 1.53 7.21 -2.39 -0.02 1.51 15 29 H 0.06 2.91 3.08 -2.39 -0.01 2.90 15 Total: -1.00 -71.09 240.41 4.33 -66.76 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: 1.06 Total: 0.21 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 3.30 Total: 3.00 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -1.62 Total: -92.97 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.53 Total: -13.63 kcal Atomic # 9 Polarization: -14.99 SS G_CDS: 1.45 Total: -13.54 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 1.67 Total: 50.16 kcal Total: -71.09 4.33 -66.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306395699.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.393 kcal (2) G-P(sol) polarization free energy of solvation -71.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds