Wall clock time and date at job start Mon Mar 30 2020 03:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00165 * 2 1 4 4 H 1.48497 * 109.47226 * 270.00028 * 3 2 1 5 5 H 1.48501 * 109.47059 * 29.99849 * 3 2 1 6 6 H 1.48495 * 109.47157 * 149.99805 * 3 2 1 7 7 C 1.38810 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00074 * 197.37152 * 7 2 1 9 9 N 1.36937 * 119.99781 * 17.37022 * 7 2 1 10 10 C 1.46924 * 120.63282 * 27.66502 * 9 7 2 11 11 C 1.53192 * 108.77854 * 126.41144 * 10 9 7 12 12 C 1.53037 * 109.31174 * 54.63839 * 11 10 9 13 13 C 1.53048 * 109.53313 * 298.63238 * 12 11 10 14 14 H 1.08990 * 109.52551 * 301.39539 * 13 12 11 15 15 O 1.42906 * 109.49401 * 181.31968 * 13 12 11 16 16 C 1.42899 * 113.99907 * 150.16617 * 15 13 12 17 17 F 1.39903 * 109.46585 * 299.99493 * 16 15 13 18 18 F 1.39898 * 109.47343 * 59.99341 * 16 15 13 19 19 C 1.46925 * 120.62997 * 207.68425 * 9 7 2 20 20 H 0.97003 * 119.99781 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.58840 * 246.20234 * 10 9 7 22 22 H 1.08999 * 109.58611 * 6.62328 * 10 9 7 23 23 H 1.08999 * 109.49601 * 174.58550 * 11 10 9 24 24 H 1.08993 * 109.49567 * 294.68196 * 11 10 9 25 25 H 1.09000 * 109.45946 * 178.61642 * 12 11 10 26 26 H 1.08998 * 109.46442 * 58.65019 * 12 11 10 27 27 H 1.08995 * 109.47225 * 179.97438 * 16 15 13 28 28 H 1.09002 * 109.58617 * 113.80157 * 19 9 7 29 29 H 1.09000 * 109.58707 * 353.37067 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2234 0.2798 9 7 1.3724 -2.3611 -0.3530 10 6 0.2278 -2.3348 -1.2739 11 6 0.5007 -3.3052 -2.4275 12 6 0.8184 -4.6902 -1.8593 13 6 2.0742 -4.6102 -0.9882 14 1 2.9083 -4.2408 -1.5845 15 8 2.3878 -5.9097 -0.4830 16 6 3.7824 -6.1246 -0.2574 17 9 4.4785 -5.9706 -1.4611 18 9 4.2527 -5.1943 0.6756 19 6 1.8192 -3.6546 0.1817 20 1 -0.4850 0.8401 -0.0004 21 1 -0.6744 -2.6410 -0.7444 22 1 0.0986 -1.3266 -1.6674 23 1 -0.3802 -3.3675 -3.0665 24 1 1.3492 -2.9477 -3.0106 25 1 0.9888 -5.3885 -2.6788 26 1 -0.0207 -5.0365 -1.2559 27 1 3.9372 -7.1332 0.1258 28 1 1.0468 -4.0685 0.8299 29 1 2.7400 -3.5172 0.7486 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306395702.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:58 Heat of formation + Delta-G solvation = -144.860477 kcal Electronic energy + Delta-G solvation = -15952.179746 eV Core-core repulsion = 12932.033823 eV Total energy + Delta-G solvation = -3020.145923 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.83717 -46.94624 -38.38518 -36.05675 -32.80423 -30.49644 -29.16802 -25.36360 -25.13997 -22.10084 -21.90624 -19.44798 -18.01842 -17.46198 -17.39304 -16.64789 -14.99536 -14.44888 -14.23361 -13.92500 -13.60476 -13.43462 -13.30486 -12.99488 -12.50328 -12.19843 -12.04959 -11.81039 -11.51494 -11.02332 -10.82140 -10.30505 -10.21140 -10.16034 -9.91224 -9.76332 -9.36368 -8.47082 -6.71522 -5.80497 -3.23506 3.27435 3.38502 3.45176 3.46995 3.89260 4.49843 4.69744 4.98528 5.31061 5.40926 5.49018 5.57590 5.75204 5.86577 6.04324 6.30412 6.49830 6.60827 6.62442 6.76587 6.79767 7.10804 7.35800 7.63476 7.79566 8.42795 9.19202 9.81340 10.37507 11.28271 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.034987 B = 0.009266 C = 0.007997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.104511 B = 3020.937117 C = 3500.609742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.166 3.834 11 C -0.141 4.141 12 C -0.102 4.102 13 C 0.060 3.940 14 H 0.070 0.930 15 O -0.387 6.387 16 C 0.404 3.596 17 F -0.214 7.214 18 F -0.206 7.206 19 C 0.129 3.871 20 H 0.254 0.746 21 H 0.021 0.979 22 H 0.090 0.910 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.159 0.841 28 H 0.027 0.973 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.296 -11.044 -2.529 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.040 3.960 11 C -0.180 4.180 12 C -0.140 4.140 13 C 0.002 3.998 14 H 0.088 0.912 15 O -0.308 6.308 16 C 0.312 3.688 17 F -0.196 7.196 18 F -0.188 7.188 19 C 0.002 3.998 20 H 0.064 0.936 21 H 0.039 0.961 22 H 0.109 0.891 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.176 0.824 28 H 0.045 0.955 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.075 -10.997 -2.475 11.986 hybrid contribution 0.683 1.038 -0.055 1.244 sum 4.758 -9.959 -2.530 11.324 Atomic orbital electron populations 1.70047 1.05270 1.25586 1.53727 1.25039 0.95313 0.98447 1.00723 0.86251 0.79142 0.83437 0.77737 1.21366 1.21693 1.20360 1.19219 0.92813 0.84652 1.41732 0.91518 1.44017 1.35747 1.00932 1.50441 1.20875 0.88627 0.98585 0.87880 1.22216 1.00555 0.95079 1.00148 1.21471 0.96293 0.98303 0.97899 1.23150 0.98420 0.80675 0.97551 0.91237 1.88346 1.20988 1.36774 1.84710 1.23047 0.78537 0.92593 0.74666 1.93034 1.80419 1.96940 1.49234 1.93081 1.89002 1.70558 1.66176 1.21419 0.98951 0.86932 0.92533 0.93566 0.96091 0.89149 0.92322 0.92503 0.92838 0.91653 0.82427 0.95513 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.34 11.19 55.49 0.62 -25.72 15 2 C 0.00 0.10 4.91 -17.43 -0.09 0.01 15 3 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 15 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 7 C -0.25 -7.16 9.59 -15.06 -0.14 -7.31 15 8 H 0.07 1.86 7.89 -52.49 -0.41 1.45 15 9 N -0.59 -15.19 2.99 -172.32 -0.52 -15.71 15 10 C 0.17 4.01 5.31 -3.71 -0.02 3.99 15 11 C -0.14 -2.72 6.08 -26.61 -0.16 -2.88 15 12 C -0.10 -1.82 5.54 -26.69 -0.15 -1.97 15 13 C 0.06 1.14 2.55 -26.61 -0.07 1.07 15 14 H 0.07 1.39 7.20 -51.93 -0.37 1.02 15 15 O -0.39 -6.38 10.30 -35.23 -0.36 -6.75 15 16 C 0.40 5.48 6.26 101.05 0.63 6.12 15 17 F -0.21 -3.19 16.63 2.25 0.04 -3.15 15 18 F -0.21 -3.31 15.54 2.25 0.04 -3.27 15 19 C 0.13 2.89 5.91 -3.71 -0.02 2.86 15 20 H 0.25 7.15 8.31 -40.82 -0.34 6.81 15 21 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.09 2.42 6.04 -51.93 -0.31 2.10 15 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.06 1.12 8.14 -51.93 -0.42 0.69 15 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 27 H 0.16 1.31 8.14 -51.93 -0.42 0.89 15 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 15 29 H 0.06 1.44 6.47 -51.93 -0.34 1.11 15 LS Contribution 246.61 15.07 3.72 3.72 Total: -1.00 -30.36 246.61 -5.05 -35.40 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -3.53 Total: -3.30 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -0.02 Total: 1.89 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.10 Total: -41.42 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.36 Total: -6.75 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.07 Total: -6.43 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.36 -5.05 -35.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306395702.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.457 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds