Wall clock time and date at job start Mon Mar 30 2020 03:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00165 * 2 1 4 4 H 1.48497 * 109.47226 * 270.00028 * 3 2 1 5 5 H 1.48501 * 109.47059 * 29.99849 * 3 2 1 6 6 H 1.48495 * 109.47157 * 149.99805 * 3 2 1 7 7 C 1.38810 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00074 * 197.37152 * 7 2 1 9 9 N 1.36937 * 119.99781 * 17.37022 * 7 2 1 10 10 C 1.46924 * 120.63282 * 27.66502 * 9 7 2 11 11 C 1.53192 * 108.77854 * 126.41144 * 10 9 7 12 12 C 1.53037 * 109.31174 * 54.63839 * 11 10 9 13 13 C 1.53048 * 109.53313 * 298.63238 * 12 11 10 14 14 H 1.08990 * 109.52551 * 301.39539 * 13 12 11 15 15 O 1.42906 * 109.49401 * 181.31968 * 13 12 11 16 16 C 1.42899 * 113.99907 * 150.16617 * 15 13 12 17 17 F 1.39903 * 109.46585 * 299.99493 * 16 15 13 18 18 F 1.39898 * 109.47343 * 59.99341 * 16 15 13 19 19 C 1.46925 * 120.62997 * 207.68425 * 9 7 2 20 20 H 0.97003 * 119.99781 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.58840 * 246.20234 * 10 9 7 22 22 H 1.08999 * 109.58611 * 6.62328 * 10 9 7 23 23 H 1.08999 * 109.49601 * 174.58550 * 11 10 9 24 24 H 1.08993 * 109.49567 * 294.68196 * 11 10 9 25 25 H 1.09000 * 109.45946 * 178.61642 * 12 11 10 26 26 H 1.08998 * 109.46442 * 58.65019 * 12 11 10 27 27 H 1.08995 * 109.47225 * 179.97438 * 16 15 13 28 28 H 1.09002 * 109.58617 * 113.80157 * 19 9 7 29 29 H 1.09000 * 109.58707 * 353.37067 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2234 0.2798 9 7 1.3724 -2.3611 -0.3530 10 6 0.2278 -2.3348 -1.2739 11 6 0.5007 -3.3052 -2.4275 12 6 0.8184 -4.6902 -1.8593 13 6 2.0742 -4.6102 -0.9882 14 1 2.9083 -4.2408 -1.5845 15 8 2.3878 -5.9097 -0.4830 16 6 3.7824 -6.1246 -0.2574 17 9 4.4785 -5.9706 -1.4611 18 9 4.2527 -5.1943 0.6756 19 6 1.8192 -3.6546 0.1817 20 1 -0.4850 0.8401 -0.0004 21 1 -0.6744 -2.6410 -0.7444 22 1 0.0986 -1.3266 -1.6674 23 1 -0.3802 -3.3675 -3.0665 24 1 1.3492 -2.9477 -3.0106 25 1 0.9888 -5.3885 -2.6788 26 1 -0.0207 -5.0365 -1.2559 27 1 3.9372 -7.1332 0.1258 28 1 1.0468 -4.0685 0.8299 29 1 2.7400 -3.5172 0.7486 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306395702.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:58 Heat of formation + Delta-G solvation = -164.785590 kcal Electronic energy + Delta-G solvation = -15953.043763 eV Core-core repulsion = 12932.033823 eV Total energy + Delta-G solvation = -3021.009940 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.98641 -48.11092 -39.92575 -37.67471 -34.68576 -32.40162 -30.86383 -27.31313 -26.38445 -23.91043 -23.53582 -21.13289 -19.32694 -18.74515 -18.58045 -18.49735 -16.94166 -16.08428 -15.75518 -15.52138 -15.16607 -14.90896 -14.62635 -14.48901 -14.28460 -13.64844 -13.52415 -13.30019 -13.02494 -12.94114 -12.68566 -12.19914 -11.98954 -11.81802 -11.70087 -11.54223 -11.06038 -10.56388 -8.76929 -7.93031 -5.39896 1.45513 1.46694 1.56080 2.09102 2.48843 2.79055 3.21770 3.64379 3.70678 3.79429 3.93062 4.06282 4.17444 4.33373 4.43948 4.71689 4.89992 4.92047 5.01295 5.10680 5.19504 5.43821 5.59213 5.63642 5.73368 6.33507 7.08884 7.77022 8.28759 9.13570 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.034987 B = 0.009266 C = 0.007997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.104511 B = 3020.937117 C = 3500.609742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.045 4.045 3 Si 0.970 3.030 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.272 4.272 8 H 0.062 0.938 9 N -0.607 5.607 10 C 0.169 3.831 11 C -0.129 4.129 12 C -0.097 4.097 13 C 0.073 3.927 14 H 0.060 0.940 15 O -0.387 6.387 16 C 0.395 3.605 17 F -0.221 7.221 18 F -0.223 7.223 19 C 0.128 3.872 20 H 0.253 0.747 21 H 0.002 0.998 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.018 0.982 29 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.031 -12.263 -3.221 13.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.241 4.241 3 Si 0.798 3.202 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.402 4.402 8 H 0.080 0.920 9 N -0.331 5.331 10 C 0.044 3.956 11 C -0.168 4.168 12 C -0.135 4.135 13 C 0.015 3.985 14 H 0.078 0.922 15 O -0.308 6.308 16 C 0.305 3.695 17 F -0.204 7.204 18 F -0.206 7.206 19 C 0.002 3.998 20 H 0.062 0.938 21 H 0.020 0.980 22 H 0.077 0.923 23 H 0.105 0.895 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.237 0.763 28 H 0.036 0.964 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.825 -12.248 -3.172 13.541 hybrid contribution 0.474 1.358 0.218 1.454 sum 5.298 -10.891 -2.954 12.466 Atomic orbital electron populations 1.70189 1.06621 1.26142 1.54716 1.25805 0.96119 1.01498 1.00684 0.85230 0.78015 0.79195 0.77782 1.20800 1.21719 1.19571 1.19481 0.92904 0.86016 1.41764 0.92008 1.44263 1.36057 1.01556 1.51270 1.20749 0.87597 0.98258 0.88991 1.22043 1.01718 0.94692 0.98343 1.21439 0.95619 0.97754 0.98660 1.22723 0.98810 0.81192 0.95795 0.92169 1.88342 1.23206 1.34727 1.84527 1.24041 0.76880 0.94520 0.74109 1.93020 1.80421 1.97067 1.49844 1.93050 1.89076 1.71644 1.66791 1.21477 0.97955 0.86486 0.93896 0.93806 0.98018 0.92266 0.89475 0.92778 0.89633 0.91463 0.76342 0.96371 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 11.19 21.65 0.24 -55.29 15 2 C -0.05 -2.57 4.91 84.86 0.42 -2.15 15 3 Si 0.97 45.47 29.59 68.60 2.03 47.50 15 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 15 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 7 C -0.27 -15.54 9.59 84.03 0.81 -14.73 15 8 H 0.06 3.50 7.89 -2.91 -0.02 3.48 15 9 N -0.61 -31.85 2.99 -699.11 -2.09 -33.94 15 10 C 0.17 8.29 5.31 86.36 0.46 8.75 15 11 C -0.13 -4.80 6.08 30.67 0.19 -4.61 15 12 C -0.10 -3.23 5.54 30.62 0.17 -3.06 15 13 C 0.07 2.67 2.55 30.67 0.08 2.75 15 14 H 0.06 2.32 7.20 -2.39 -0.02 2.31 15 15 O -0.39 -11.76 10.30 -148.98 -1.53 -13.30 15 16 C 0.40 9.62 6.26 113.37 0.71 10.33 15 17 F -0.22 -6.05 16.63 44.97 0.75 -5.30 15 18 F -0.22 -6.86 15.54 44.97 0.70 -6.16 15 19 C 0.13 5.76 5.91 86.36 0.51 6.27 15 20 H 0.25 14.48 8.31 -92.71 -0.77 13.71 15 21 H 0.00 0.09 8.14 -2.39 -0.02 0.07 15 22 H 0.06 3.25 6.04 -2.39 -0.01 3.23 15 23 H 0.09 2.74 8.14 -2.39 -0.02 2.72 15 24 H 0.05 2.04 8.14 -2.39 -0.02 2.02 15 25 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 26 H 0.07 2.23 8.14 -2.39 -0.02 2.21 15 27 H 0.22 2.63 8.14 -2.39 -0.02 2.61 15 28 H 0.02 0.84 8.14 -2.39 -0.02 0.83 15 29 H 0.05 2.47 6.47 -2.39 -0.02 2.45 15 Total: -1.00 -66.08 246.61 4.57 -61.51 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: 1.14 Total: 1.43 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 3.34 Total: 3.55 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -1.85 Total: -89.23 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -1.53 Total: -13.30 kcal Atomic # 9 Polarization: -12.91 SS G_CDS: 1.45 Total: -11.46 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -66.08 4.57 -61.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306395702.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.278 kcal (2) G-P(sol) polarization free energy of solvation -66.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds