Wall clock time and date at job start Mon Mar 30 2020 02:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36012 * 116.99537 * 2 1 4 4 C 1.38617 * 119.97454 * 359.97438 * 3 2 1 5 5 C 1.38669 * 120.47233 * 180.02562 * 4 3 2 6 6 C 1.37589 * 120.41758 * 359.94861 * 5 4 3 7 7 C 1.40451 * 119.93054 * 0.03053 * 6 5 4 8 8 C 1.46117 * 120.23335 * 179.97438 * 7 6 5 9 9 N 1.32091 * 119.99790 * 179.72224 * 8 7 6 10 10 C 1.32705 * 119.99813 * 180.27963 * 9 8 7 11 11 H 1.08002 * 120.00246 * 359.97438 * 10 9 8 12 12 C 1.40700 * 120.00100 * 179.97438 * 10 9 8 13 13 N 1.30554 * 119.99956 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00036 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46867 * 90.00282 * 14 12 10 16 16 H 1.48501 * 109.47216 * 210.00139 * 14 12 10 17 17 H 1.48499 * 109.47135 * 330.00480 * 14 12 10 18 18 C 1.38937 * 119.96835 * 180.21230 * 3 2 1 19 19 O 1.35743 * 120.20581 * 0.04572 * 18 3 2 20 20 H 1.09006 * 109.46980 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47329 * 299.99540 * 1 2 3 22 22 H 1.09004 * 109.47485 * 60.00091 * 1 2 3 23 23 H 1.07994 * 119.76432 * 359.97429 * 4 3 2 24 24 H 1.08004 * 119.79366 * 179.97438 * 5 4 3 25 25 H 1.08006 * 120.03434 * 180.02562 * 6 5 4 26 26 H 1.08002 * 120.00215 * 0.02562 * 8 7 6 27 27 H 0.96996 * 120.00260 * 179.97438 * 13 12 10 28 28 H 0.96701 * 113.99635 * 270.22343 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2119 0.0000 4 6 1.2908 2.3741 -0.0005 5 6 1.9094 3.6151 -0.0011 6 6 3.2821 3.7092 0.0000 7 6 4.0645 2.5427 0.0010 8 6 5.5227 2.6349 0.0015 9 7 6.2540 1.5349 0.0080 10 6 7.5784 1.6186 0.0141 11 1 8.0583 2.5862 0.0134 12 6 8.3574 0.4470 0.0215 13 7 7.7772 -0.7226 0.0229 14 14 10.2216 0.5649 0.0294 15 1 10.7094 0.6008 1.4316 16 1 10.7953 -0.6163 -0.6641 17 1 10.6423 1.8039 -0.6728 18 6 3.4338 1.2840 -0.0045 19 8 4.1767 0.1479 -0.0098 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 0.2126 2.3126 -0.0014 24 1 1.3100 4.5135 -0.0019 25 1 3.7575 4.6790 0.0000 26 1 6.0027 3.6024 0.0016 27 1 8.3142 -1.5303 0.0277 28 1 4.3920 -0.1853 0.8721 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306485426.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:49 Heat of formation + Delta-G solvation = -46.229627 kcal Electronic energy + Delta-G solvation = -14373.431182 eV Core-core repulsion = 11775.958650 eV Total energy + Delta-G solvation = -2597.472533 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.29046 -36.94754 -35.14397 -35.07192 -32.63614 -29.55366 -28.75396 -26.71140 -25.39440 -22.28291 -21.24426 -19.43149 -17.39303 -17.07220 -16.50946 -15.72401 -15.19567 -15.09331 -14.29589 -13.84357 -13.43414 -13.02107 -12.87422 -12.14859 -11.83281 -11.76998 -11.51150 -11.26008 -10.95646 -10.77789 -10.69414 -10.29555 -10.24141 -9.16854 -9.13872 -7.59450 -7.29861 -7.28332 -7.20707 -4.57116 2.08303 2.36565 2.79344 2.83859 2.89858 3.58420 3.68792 3.92859 4.66553 5.39842 5.44585 5.48646 5.61400 5.67666 5.75745 6.04625 6.18239 6.31348 6.52220 6.65423 6.86306 7.09498 7.19063 7.34823 7.40195 7.61129 7.81192 7.97599 8.14879 8.67221 9.19318 9.60458 10.44328 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.045953 B = 0.007130 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.169883 B = 3926.390562 C = 4517.917804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.314 6.314 3 C 0.106 3.894 4 C -0.271 4.271 5 C -0.079 4.079 6 C -0.195 4.195 7 C 0.067 3.933 8 C -0.212 4.212 9 N -0.299 5.299 10 C -0.220 4.220 11 H 0.059 0.941 12 C 0.067 3.933 13 N -0.706 5.706 14 Si 0.935 3.065 15 H -0.261 1.261 16 H -0.268 1.268 17 H -0.254 1.254 18 C 0.035 3.965 19 O -0.450 6.450 20 H 0.089 0.911 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.110 0.890 24 H 0.106 0.894 25 H 0.110 0.890 26 H 0.061 0.939 27 H 0.292 0.708 28 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.969 0.962 1.566 5.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.228 6.228 3 C 0.061 3.939 4 C -0.291 4.291 5 C -0.098 4.098 6 C -0.216 4.216 7 C 0.065 3.935 8 C -0.376 4.376 9 N -0.011 5.011 10 C -0.384 4.384 11 H 0.077 0.923 12 C -0.163 4.163 13 N -0.326 5.326 14 Si 0.756 3.244 15 H -0.185 1.185 16 H -0.192 1.192 17 H -0.178 1.178 18 C -0.013 4.013 19 O -0.256 6.256 20 H 0.107 0.893 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.128 0.872 24 H 0.125 0.875 25 H 0.128 0.872 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.206 -0.213 0.943 5.295 hybrid contribution 0.843 1.006 0.485 1.399 sum -4.363 0.793 1.428 4.658 Atomic orbital electron populations 1.22880 0.80266 1.02617 1.00644 1.86129 1.19784 1.27579 1.89323 1.19463 0.91824 0.83810 0.98767 1.20616 0.98258 0.92175 1.18046 1.20465 0.94373 0.95825 0.99119 1.20793 0.92929 0.97152 1.10678 1.19009 0.93241 0.90441 0.90784 1.21939 0.89876 0.91661 1.34076 1.66976 1.06416 1.31337 0.96328 1.21032 0.89616 0.92731 1.35026 0.92341 1.26644 1.03034 0.94296 0.92356 1.69652 1.39859 0.99119 1.24007 0.85824 0.78662 0.79891 0.79987 1.18522 1.19220 1.17773 1.17881 0.85025 0.87313 1.11043 1.84908 1.71395 1.37961 1.31346 0.89269 0.93441 0.93387 0.87227 0.87542 0.87218 0.92171 0.89656 0.78024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 15 2 O -0.31 -6.37 10.28 -34.43 -0.35 -6.73 15 3 C 0.11 2.35 6.69 -39.18 -0.26 2.08 15 4 C -0.27 -5.25 9.04 -39.28 -0.36 -5.60 15 5 C -0.08 -1.51 10.01 -39.66 -0.40 -1.91 15 6 C -0.20 -4.20 9.80 -38.99 -0.38 -4.58 15 7 C 0.07 1.69 5.88 -104.94 -0.62 1.07 15 8 C -0.21 -5.75 10.39 -14.28 -0.15 -5.90 15 9 N -0.30 -8.51 7.81 -10.28 -0.08 -8.59 15 10 C -0.22 -5.86 9.74 -16.25 -0.16 -6.02 15 11 H 0.06 1.49 7.75 -52.49 -0.41 1.08 15 12 C 0.07 1.60 5.53 -17.17 -0.09 1.50 15 13 N -0.71 -17.47 13.58 55.59 0.76 -16.71 15 14 Si 0.93 16.95 29.57 -169.99 -5.03 11.93 15 15 H -0.26 -4.59 7.11 56.52 0.40 -4.18 15 16 H -0.27 -4.65 7.11 56.52 0.40 -4.25 15 17 H -0.25 -4.58 7.11 56.52 0.40 -4.17 15 18 C 0.04 0.89 6.75 -38.36 -0.26 0.63 15 19 O -0.45 -11.83 11.14 -33.59 -0.37 -12.21 15 20 H 0.09 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.05 0.61 7.66 -51.93 -0.40 0.21 15 22 H 0.05 0.63 7.65 -51.93 -0.40 0.23 15 23 H 0.11 1.78 6.26 -52.49 -0.33 1.45 15 24 H 0.11 1.65 8.06 -52.48 -0.42 1.23 15 25 H 0.11 2.14 8.06 -52.48 -0.42 1.72 15 26 H 0.06 1.60 7.95 -52.49 -0.42 1.18 15 27 H 0.29 6.27 8.29 -40.82 -0.34 5.93 15 28 H 0.37 8.82 9.06 45.56 0.41 9.23 15 LS Contribution 256.23 15.07 3.86 3.86 Total: -1.00 -30.65 256.23 -4.84 -35.49 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -1.94 Total: 10.25 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -1.68 Total: -17.29 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.67 Total: -25.31 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.73 Total: -18.93 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.93 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.65 -4.84 -35.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306485426.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.741 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds