Wall clock time and date at job start Mon Mar 30 2020 02:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36012 * 116.99537 * 2 1 4 4 C 1.38617 * 119.97454 * 359.97438 * 3 2 1 5 5 C 1.38669 * 120.47233 * 180.02562 * 4 3 2 6 6 C 1.37589 * 120.41758 * 359.94861 * 5 4 3 7 7 C 1.40451 * 119.93054 * 0.03053 * 6 5 4 8 8 C 1.46117 * 120.23335 * 179.97438 * 7 6 5 9 9 N 1.32091 * 119.99790 * 179.72224 * 8 7 6 10 10 C 1.32705 * 119.99813 * 180.27963 * 9 8 7 11 11 H 1.08002 * 120.00246 * 359.97438 * 10 9 8 12 12 C 1.40700 * 120.00100 * 179.97438 * 10 9 8 13 13 N 1.30554 * 119.99956 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00036 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46867 * 90.00282 * 14 12 10 16 16 H 1.48501 * 109.47216 * 210.00139 * 14 12 10 17 17 H 1.48499 * 109.47135 * 330.00480 * 14 12 10 18 18 C 1.38937 * 119.96835 * 180.21230 * 3 2 1 19 19 O 1.35743 * 120.20581 * 0.04572 * 18 3 2 20 20 H 1.09006 * 109.46980 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47329 * 299.99540 * 1 2 3 22 22 H 1.09004 * 109.47485 * 60.00091 * 1 2 3 23 23 H 1.07994 * 119.76432 * 359.97429 * 4 3 2 24 24 H 1.08004 * 119.79366 * 179.97438 * 5 4 3 25 25 H 1.08006 * 120.03434 * 180.02562 * 6 5 4 26 26 H 1.08002 * 120.00215 * 0.02562 * 8 7 6 27 27 H 0.96996 * 120.00260 * 179.97438 * 13 12 10 28 28 H 0.96701 * 113.99635 * 270.22343 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2119 0.0000 4 6 1.2908 2.3741 -0.0005 5 6 1.9094 3.6151 -0.0011 6 6 3.2821 3.7092 0.0000 7 6 4.0645 2.5427 0.0010 8 6 5.5227 2.6349 0.0015 9 7 6.2540 1.5349 0.0080 10 6 7.5784 1.6186 0.0141 11 1 8.0583 2.5862 0.0134 12 6 8.3574 0.4470 0.0215 13 7 7.7772 -0.7226 0.0229 14 14 10.2216 0.5649 0.0294 15 1 10.7094 0.6008 1.4316 16 1 10.7953 -0.6163 -0.6641 17 1 10.6423 1.8039 -0.6728 18 6 3.4338 1.2840 -0.0045 19 8 4.1767 0.1479 -0.0098 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 0.2126 2.3126 -0.0014 24 1 1.3100 4.5135 -0.0019 25 1 3.7575 4.6790 0.0000 26 1 6.0027 3.6024 0.0016 27 1 8.3142 -1.5303 0.0277 28 1 4.3920 -0.1853 0.8721 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306485426.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:49 Heat of formation + Delta-G solvation = -68.165368 kcal Electronic energy + Delta-G solvation = -14374.382387 eV Core-core repulsion = 11775.958650 eV Total energy + Delta-G solvation = -2598.423738 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.92238 -38.62924 -37.03110 -36.90839 -34.51950 -31.31095 -30.35072 -28.10685 -27.20194 -24.08443 -22.91648 -21.20510 -19.32346 -18.87342 -18.15931 -17.48850 -16.69768 -16.61206 -15.92557 -15.46121 -15.17879 -14.69136 -14.52577 -13.78892 -13.59941 -13.48893 -13.05701 -12.74952 -12.62496 -12.34332 -12.09717 -11.86686 -11.77531 -11.03580 -10.92787 -9.40789 -9.31944 -9.06462 -8.89356 -6.56331 0.35762 0.66964 1.30580 1.32853 1.52816 1.97250 2.08063 2.51480 2.92482 3.57623 3.78849 4.14708 4.37224 4.40333 4.44770 4.58969 4.65486 4.68397 4.73833 4.80975 5.16345 5.29100 5.42576 5.55417 5.67380 5.84369 6.00582 6.17710 6.58136 6.71349 7.30222 7.86064 8.47791 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.045953 B = 0.007130 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.169883 B = 3926.390562 C = 4517.917804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.103 3.897 4 C -0.253 4.253 5 C -0.066 4.066 6 C -0.200 4.200 7 C 0.035 3.965 8 C -0.241 4.241 9 N -0.329 5.329 10 C -0.261 4.261 11 H 0.059 0.941 12 C 0.027 3.973 13 N -0.748 5.748 14 Si 1.019 2.981 15 H -0.248 1.248 16 H -0.251 1.251 17 H -0.253 1.253 18 C -0.004 4.004 19 O -0.470 6.470 20 H 0.115 0.885 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.153 0.847 24 H 0.156 0.844 25 H 0.125 0.875 26 H 0.053 0.947 27 H 0.307 0.693 28 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 1.613 1.606 6.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.057 3.943 4 C -0.272 4.272 5 C -0.084 4.084 6 C -0.220 4.220 7 C 0.034 3.966 8 C -0.406 4.406 9 N -0.040 5.040 10 C -0.424 4.424 11 H 0.076 0.924 12 C -0.199 4.199 13 N -0.368 5.368 14 Si 0.835 3.165 15 H -0.172 1.172 16 H -0.174 1.174 17 H -0.177 1.177 18 C -0.052 4.052 19 O -0.277 6.277 20 H 0.134 0.866 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.170 0.830 24 H 0.174 0.826 25 H 0.143 0.857 26 H 0.070 0.930 27 H 0.119 0.881 28 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.746 0.431 0.982 6.830 hybrid contribution 0.969 0.826 0.475 1.359 sum -5.777 1.257 1.458 6.089 Atomic orbital electron populations 1.23307 0.76872 1.05113 1.02177 1.86099 1.23260 1.27009 1.89027 1.19512 0.91002 0.85584 0.98156 1.21149 1.00274 0.91080 1.14725 1.20996 0.93492 0.97685 0.96254 1.21082 0.94229 0.96541 1.10104 1.19245 0.92668 0.92121 0.92593 1.22217 0.91388 0.91170 1.35815 1.67042 1.07517 1.31991 0.97499 1.21512 0.89647 0.94192 1.37056 0.92398 1.27813 1.08410 0.92879 0.90818 1.69667 1.42586 1.00271 1.24318 0.84652 0.70915 0.80312 0.80659 1.17175 1.17389 1.17663 1.18289 0.86706 0.86807 1.13381 1.84873 1.72295 1.38941 1.31573 0.86650 0.91544 0.91907 0.82956 0.82603 0.85743 0.92989 0.88146 0.78269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.60 15 2 O -0.34 -13.28 10.28 -79.68 -0.82 -14.10 15 3 C 0.10 4.42 6.69 22.53 0.15 4.57 15 4 C -0.25 -8.80 9.04 22.46 0.20 -8.59 15 5 C -0.07 -2.27 10.01 22.22 0.22 -2.04 15 6 C -0.20 -8.35 9.80 22.66 0.22 -8.13 15 7 C 0.04 1.83 5.88 -20.07 -0.12 1.71 15 8 C -0.24 -13.89 10.39 86.70 0.90 -12.99 15 9 N -0.33 -19.95 7.81 -186.44 -1.46 -21.40 15 10 C -0.26 -14.66 9.74 85.16 0.83 -13.83 15 11 H 0.06 3.13 7.75 -2.91 -0.02 3.11 15 12 C 0.03 1.32 5.53 85.48 0.47 1.80 15 13 N -0.75 -38.31 13.58 21.97 0.30 -38.01 15 14 Si 1.02 34.84 29.57 68.60 2.03 36.87 15 15 H -0.25 -7.92 7.11 99.48 0.71 -7.22 15 16 H -0.25 -7.79 7.11 99.48 0.71 -7.09 15 17 H -0.25 -8.51 7.11 99.48 0.71 -7.80 15 18 C 0.00 -0.23 6.75 23.06 0.16 -0.07 15 19 O -0.47 -26.23 11.14 -76.67 -0.85 -27.08 15 20 H 0.12 2.24 8.14 -2.38 -0.02 2.22 15 21 H 0.07 1.40 7.66 -2.39 -0.02 1.38 15 22 H 0.06 1.38 7.65 -2.38 -0.02 1.36 15 23 H 0.15 4.00 6.26 -2.91 -0.02 3.98 15 24 H 0.16 3.84 8.06 -2.91 -0.02 3.82 15 25 H 0.12 4.72 8.06 -2.91 -0.02 4.70 15 26 H 0.05 2.96 7.95 -2.91 -0.02 2.94 15 27 H 0.31 13.44 8.29 -92.71 -0.77 12.67 15 28 H 0.36 19.05 9.06 -74.06 -0.67 18.38 15 Total: -1.00 -71.14 256.23 3.86 -67.27 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.51 Total: 32.44 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 4.15 Total: -35.99 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -1.16 Total: -59.41 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -1.67 Total: -41.18 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Total: -71.14 3.86 -67.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306485426.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.891 kcal (2) G-P(sol) polarization free energy of solvation -71.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds