Wall clock time and date at job start Mon Mar 30 2020 03:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99848 * 2 1 4 4 H 1.48505 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46972 * 299.99856 * 3 2 1 6 6 H 1.48497 * 109.47348 * 60.00176 * 3 2 1 7 7 C 1.37878 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99514 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00025 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47104 * 180.02562 * 9 7 2 11 11 C 1.46830 * 110.98168 * 294.21614 * 10 9 7 12 12 C 1.53038 * 109.51757 * 174.15669 * 11 10 9 13 13 C 1.53127 * 109.27941 * 59.17550 * 12 11 10 14 14 F 1.39892 * 109.52473 * 182.44255 * 13 12 11 15 15 F 1.39898 * 109.57224 * 62.28063 * 13 12 11 16 16 C 1.53117 * 109.15989 * 302.34585 * 13 12 11 17 17 H 1.09001 * 109.50874 * 297.71787 * 16 13 12 18 18 O 1.42896 * 109.53554 * 177.61303 * 16 13 12 19 19 C 1.46847 * 111.00144 * 170.00196 * 10 9 7 20 20 H 0.97000 * 119.99990 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47398 * 60.00458 * 9 7 2 22 22 H 1.09002 * 109.47205 * 299.99840 * 9 7 2 23 23 H 1.08995 * 109.46742 * 54.13906 * 11 10 9 24 24 H 1.09004 * 109.46459 * 294.16736 * 11 10 9 25 25 H 1.08997 * 109.50308 * 299.23764 * 12 11 10 26 26 H 1.08996 * 109.53785 * 179.13596 * 12 11 10 27 27 H 0.96695 * 114.00044 * 60.17562 * 18 16 13 28 28 H 1.09002 * 109.46448 * 65.81961 * 19 10 9 29 29 H 1.08994 * 109.45958 * 305.84326 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9748 -3.6499 -1.2508 12 6 4.0548 -4.7301 -1.1574 13 6 3.3920 -6.0875 -0.9066 14 9 4.3776 -7.0700 -0.7648 15 9 2.5618 -6.4101 -1.9854 16 6 2.5582 -6.0104 0.3754 17 1 3.2112 -5.7983 1.2220 18 8 1.8915 -7.2563 0.5874 19 6 1.5215 -4.8931 0.2375 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 3.4443 -2.6801 -1.4151 24 1 2.3067 -3.8753 -2.0822 25 1 4.7314 -4.4980 -0.3349 26 1 4.6160 -4.7662 -2.0911 27 1 2.4887 -8.0106 0.6838 28 1 0.8602 -5.1126 -0.6008 29 1 0.9357 -4.8259 1.1542 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306500027.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:53 Heat of formation + Delta-G solvation = -151.545990 kcal Electronic energy + Delta-G solvation = -15851.307237 eV Core-core repulsion = 12830.871409 eV Total energy + Delta-G solvation = -3020.435828 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.86829 -46.86570 -38.33647 -36.21059 -33.06723 -31.44192 -29.69919 -26.81812 -23.85783 -23.01577 -21.44330 -19.77780 -17.79769 -17.29514 -16.48650 -16.27650 -16.10758 -14.96630 -14.34570 -14.02552 -13.90454 -13.60758 -13.20722 -13.03829 -12.98861 -12.53966 -12.18865 -11.77660 -11.49805 -11.15477 -10.88832 -10.73304 -10.67742 -10.53794 -10.01748 -9.70994 -9.30087 -8.51890 -7.48612 -6.10232 -4.12736 3.26932 3.34669 3.38356 3.77010 3.88108 4.18661 4.37494 4.46985 4.70251 4.94526 5.21970 5.26444 5.41829 5.60105 5.74920 5.78468 6.00084 6.19592 6.33892 6.46750 7.11993 7.21022 7.47040 7.66788 7.91112 8.02421 8.38046 8.94212 9.52026 11.00658 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.052346 B = 0.007382 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.778105 B = 3792.053992 C = 4045.809957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.512 4.512 8 H 0.066 0.934 9 C 0.195 3.805 10 N -0.534 5.534 11 C 0.060 3.940 12 C -0.154 4.154 13 C 0.252 3.748 14 F -0.208 7.208 15 F -0.194 7.194 16 C 0.080 3.920 17 H 0.092 0.908 18 O -0.553 6.553 19 C 0.061 3.939 20 H 0.262 0.738 21 H -0.004 1.004 22 H 0.035 0.965 23 H 0.102 0.898 24 H 0.034 0.966 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.380 0.620 28 H 0.041 0.959 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.812 -10.543 -0.763 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.071 3.929 10 N -0.261 5.261 11 C -0.068 4.068 12 C -0.193 4.193 13 C 0.216 3.784 14 F -0.189 7.189 15 F -0.175 7.175 16 C 0.019 3.981 17 H 0.110 0.890 18 O -0.357 6.357 19 C -0.068 4.068 20 H 0.072 0.928 21 H 0.014 0.986 22 H 0.053 0.947 23 H 0.121 0.879 24 H 0.052 0.948 25 H 0.119 0.881 26 H 0.105 0.895 27 H 0.228 0.772 28 H 0.060 0.940 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.445 -10.002 -0.442 11.907 hybrid contribution 0.376 0.233 -0.755 0.875 sum 6.821 -9.769 -1.197 11.975 Atomic orbital electron populations 1.69967 1.06105 1.26874 1.50581 1.24994 0.94874 0.99404 0.95249 0.86419 0.80012 0.83275 0.77571 1.19619 1.21075 1.20954 1.21152 0.93549 0.89708 1.50642 0.91632 1.19750 0.89864 0.86629 0.96704 1.62073 1.28359 1.02183 1.33460 1.21988 0.94524 0.98737 0.91587 1.22673 1.00297 0.91523 1.04805 1.22216 0.81717 0.87112 0.87368 1.92960 1.63883 1.65917 1.96190 1.92991 1.72848 1.93838 1.57847 1.22846 0.95214 0.86248 0.93749 0.88980 1.86529 1.37443 1.16851 1.94908 1.21866 0.93968 0.88236 1.02709 0.92825 0.98575 0.94666 0.87943 0.94768 0.88114 0.89464 0.77214 0.94036 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.01 13.29 55.43 0.74 -25.28 15 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 15 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 15 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.51 -13.77 8.43 -34.44 -0.29 -14.06 15 8 H 0.07 1.72 7.12 -52.49 -0.37 1.35 15 9 C 0.19 4.90 4.72 -4.98 -0.02 4.87 15 10 N -0.53 -10.99 4.65 -236.13 -1.10 -12.09 15 11 C 0.06 1.11 5.18 -3.84 -0.02 1.09 15 12 C -0.15 -2.29 5.62 -26.65 -0.15 -2.44 15 13 C 0.25 3.85 1.81 -26.61 -0.05 3.80 15 14 F -0.21 -2.98 16.78 2.25 0.04 -2.94 15 15 F -0.19 -3.35 16.14 2.25 0.04 -3.31 15 16 C 0.08 1.23 3.21 -26.65 -0.09 1.14 15 17 H 0.09 1.30 8.14 -51.93 -0.42 0.87 15 18 O -0.55 -7.96 13.24 -35.23 -0.47 -8.43 15 19 C 0.06 1.12 5.00 -3.83 -0.02 1.10 15 20 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 21 H 0.00 -0.10 8.12 -51.93 -0.42 -0.52 15 22 H 0.04 0.94 7.99 -51.93 -0.41 0.53 15 23 H 0.10 1.97 6.70 -51.93 -0.35 1.62 15 24 H 0.03 0.65 7.88 -51.93 -0.41 0.24 15 25 H 0.10 1.39 8.14 -51.93 -0.42 0.96 15 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 27 H 0.38 3.86 8.81 45.56 0.40 4.26 15 28 H 0.04 0.81 7.88 -51.93 -0.41 0.40 15 29 H 0.09 1.65 8.01 -51.93 -0.42 1.23 15 LS Contribution 249.62 15.07 3.76 3.76 Total: -1.00 -29.49 249.62 -5.54 -35.03 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -2.79 Total: 0.35 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -0.73 Total: -3.03 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.36 Total: -37.36 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.47 Total: -8.43 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.07 Total: -6.25 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.49 -5.54 -35.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306500027.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.521 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds