Wall clock time and date at job start Mon Mar 30 2020 03:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99848 * 2 1 4 4 H 1.48505 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46972 * 299.99856 * 3 2 1 6 6 H 1.48497 * 109.47348 * 60.00176 * 3 2 1 7 7 C 1.37878 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99514 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00025 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47104 * 180.02562 * 9 7 2 11 11 C 1.46830 * 110.98168 * 294.21614 * 10 9 7 12 12 C 1.53038 * 109.51757 * 174.15669 * 11 10 9 13 13 C 1.53127 * 109.27941 * 59.17550 * 12 11 10 14 14 F 1.39892 * 109.52473 * 182.44255 * 13 12 11 15 15 F 1.39898 * 109.57224 * 62.28063 * 13 12 11 16 16 C 1.53117 * 109.15989 * 302.34585 * 13 12 11 17 17 H 1.09001 * 109.50874 * 297.71787 * 16 13 12 18 18 O 1.42896 * 109.53554 * 177.61303 * 16 13 12 19 19 C 1.46847 * 111.00144 * 170.00196 * 10 9 7 20 20 H 0.97000 * 119.99990 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47398 * 60.00458 * 9 7 2 22 22 H 1.09002 * 109.47205 * 299.99840 * 9 7 2 23 23 H 1.08995 * 109.46742 * 54.13906 * 11 10 9 24 24 H 1.09004 * 109.46459 * 294.16736 * 11 10 9 25 25 H 1.08997 * 109.50308 * 299.23764 * 12 11 10 26 26 H 1.08996 * 109.53785 * 179.13596 * 12 11 10 27 27 H 0.96695 * 114.00044 * 60.17562 * 18 16 13 28 28 H 1.09002 * 109.46448 * 65.81961 * 19 10 9 29 29 H 1.08994 * 109.45958 * 305.84326 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9748 -3.6499 -1.2508 12 6 4.0548 -4.7301 -1.1574 13 6 3.3920 -6.0875 -0.9066 14 9 4.3776 -7.0700 -0.7648 15 9 2.5618 -6.4101 -1.9854 16 6 2.5582 -6.0104 0.3754 17 1 3.2112 -5.7983 1.2220 18 8 1.8915 -7.2563 0.5874 19 6 1.5215 -4.8931 0.2375 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 3.4443 -2.6801 -1.4151 24 1 2.3067 -3.8753 -2.0822 25 1 4.7314 -4.4980 -0.3349 26 1 4.6160 -4.7662 -2.0911 27 1 2.4887 -8.0106 0.6838 28 1 0.8602 -5.1126 -0.6008 29 1 0.9357 -4.8259 1.1542 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306500027.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:53 Heat of formation + Delta-G solvation = -174.010800 kcal Electronic energy + Delta-G solvation = -15852.281384 eV Core-core repulsion = 12830.871409 eV Total energy + Delta-G solvation = -3021.409975 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.09409 -48.09754 -39.78195 -37.53971 -35.00207 -33.02506 -31.13437 -28.68557 -25.55474 -24.38139 -23.15895 -21.17080 -19.03406 -18.54506 -18.50302 -17.55963 -17.37688 -16.77116 -15.88877 -15.60675 -15.45601 -14.90261 -14.46370 -14.42239 -14.29875 -14.21669 -13.65889 -13.36268 -13.12922 -12.84283 -12.60461 -12.47020 -12.16452 -12.03283 -11.79735 -11.31063 -10.94947 -10.62455 -9.23329 -8.20560 -6.31026 1.44505 1.45389 1.58463 2.38657 2.54771 2.64299 2.95146 3.13181 3.17951 3.41642 3.56887 3.92621 4.11549 4.27756 4.45486 4.51891 4.58499 4.73215 4.90410 4.95133 5.17384 5.21657 5.63053 5.98439 6.14051 6.45006 6.55533 6.84355 7.39051 8.91292 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.052346 B = 0.007382 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.778105 B = 3792.053992 C = 4045.809957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.523 4.523 8 H 0.073 0.927 9 C 0.207 3.793 10 N -0.532 5.532 11 C 0.059 3.941 12 C -0.145 4.145 13 C 0.255 3.745 14 F -0.197 7.197 15 F -0.208 7.208 16 C 0.090 3.910 17 H 0.113 0.887 18 O -0.563 6.563 19 C 0.059 3.941 20 H 0.264 0.736 21 H -0.035 1.035 22 H 0.010 0.990 23 H 0.093 0.907 24 H 0.020 0.980 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.401 0.599 28 H 0.024 0.976 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.890 -10.846 -0.576 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.561 4.561 8 H 0.091 0.909 9 C 0.082 3.918 10 N -0.258 5.258 11 C -0.069 4.069 12 C -0.183 4.183 13 C 0.218 3.782 14 F -0.178 7.178 15 F -0.189 7.189 16 C 0.029 3.971 17 H 0.131 0.869 18 O -0.370 6.370 19 C -0.069 4.069 20 H 0.073 0.927 21 H -0.018 1.018 22 H 0.028 0.972 23 H 0.112 0.888 24 H 0.039 0.961 25 H 0.137 0.863 26 H 0.129 0.871 27 H 0.252 0.748 28 H 0.042 0.958 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.553 -10.349 -0.255 13.428 hybrid contribution -0.306 0.237 -0.816 0.903 sum 8.247 -10.112 -1.072 13.093 Atomic orbital electron populations 1.70101 1.07904 1.27944 1.51691 1.25935 0.95684 1.03327 0.94722 0.85291 0.79181 0.78381 0.77492 1.18172 1.20751 1.20664 1.21480 0.93970 0.90477 1.50149 0.90935 1.19409 0.90016 0.88403 0.94008 1.61985 1.27138 1.01952 1.34723 1.21991 0.94967 0.99895 0.90032 1.22615 0.99079 0.89668 1.06953 1.22193 0.81709 0.87498 0.86785 1.92982 1.63302 1.65454 1.96096 1.92973 1.73394 1.93965 1.58551 1.22633 0.94140 0.85675 0.94641 0.86916 1.86485 1.38461 1.17219 1.94879 1.21847 0.94849 0.88464 1.01761 0.92677 1.01752 0.97159 0.88848 0.96128 0.86274 0.87073 0.74791 0.95750 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.40 13.29 21.45 0.28 -55.12 15 2 C 0.00 0.08 5.46 84.65 0.46 0.54 15 3 Si 0.97 42.75 29.54 68.60 2.03 44.77 15 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 15 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 7 C -0.52 -28.29 8.43 25.60 0.22 -28.08 15 8 H 0.07 3.75 7.12 -2.91 -0.02 3.73 15 9 C 0.21 10.77 4.72 85.56 0.40 11.17 15 10 N -0.53 -21.92 4.65 -900.97 -4.19 -26.11 15 11 C 0.06 2.14 5.18 86.33 0.45 2.59 15 12 C -0.15 -3.90 5.62 30.65 0.17 -3.73 15 13 C 0.25 7.13 1.81 30.68 0.06 7.19 15 14 F -0.20 -4.96 16.78 44.97 0.75 -4.20 15 15 F -0.21 -6.84 16.14 44.97 0.73 -6.11 15 16 C 0.09 2.57 3.21 30.65 0.10 2.66 15 17 H 0.11 2.81 8.14 -2.39 -0.02 2.79 15 18 O -0.56 -14.99 13.24 -148.98 -1.97 -16.96 15 19 C 0.06 2.18 5.00 86.33 0.43 2.61 15 20 H 0.26 14.70 8.31 -92.71 -0.77 13.93 15 21 H -0.04 -2.01 8.12 -2.39 -0.02 -2.03 15 22 H 0.01 0.58 7.99 -2.39 -0.02 0.56 15 23 H 0.09 3.53 6.70 -2.39 -0.02 3.52 15 24 H 0.02 0.79 7.88 -2.38 -0.02 0.77 15 25 H 0.12 2.83 8.14 -2.39 -0.02 2.81 15 26 H 0.11 2.51 8.14 -2.39 -0.02 2.49 15 27 H 0.40 6.95 8.81 -74.06 -0.65 6.30 15 28 H 0.02 0.97 7.88 -2.39 -0.02 0.95 15 29 H 0.09 3.18 8.01 -2.39 -0.02 3.16 15 Total: -1.00 -63.12 249.62 0.43 -62.69 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 0.51 Total: 6.07 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 2.29 Total: -5.04 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -3.90 Total: -81.22 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -1.97 Total: -16.96 kcal Atomic # 9 Polarization: -11.80 SS G_CDS: 1.48 Total: -10.31 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -63.12 0.43 -62.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306500027.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.318 kcal (2) G-P(sol) polarization free energy of solvation -63.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds