Wall clock time and date at job start Mon Mar 30 2020 03:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99834 * 2 1 4 4 H 1.48501 * 109.46841 * 90.00095 * 3 2 1 5 5 H 1.48497 * 109.47155 * 209.99889 * 3 2 1 6 6 H 1.48498 * 109.47109 * 330.00185 * 3 2 1 7 7 C 1.37882 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99703 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99709 * 179.97438 * 7 2 1 10 10 N 1.46909 * 109.47053 * 174.99372 * 9 7 2 11 11 C 1.46854 * 110.99544 * 300.66704 * 10 9 7 12 12 C 1.53030 * 109.51979 * 185.83943 * 11 10 9 13 13 C 1.53121 * 109.28145 * 300.81756 * 12 11 10 14 14 F 1.39903 * 109.51987 * 297.75447 * 13 12 11 15 15 F 1.39895 * 109.52494 * 177.56130 * 13 12 11 16 16 C 1.53121 * 109.15968 * 57.65582 * 13 12 11 17 17 H 1.08999 * 109.53357 * 62.30680 * 16 13 12 18 18 O 1.42894 * 109.50549 * 182.41068 * 16 13 12 19 19 C 1.46842 * 110.99765 * 64.87217 * 10 9 7 20 20 H 0.97002 * 120.00104 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.47719 * 294.98808 * 9 7 2 22 22 H 1.08993 * 109.47535 * 54.99367 * 9 7 2 23 23 H 1.09001 * 109.45996 * 305.85290 * 11 10 9 24 24 H 1.08993 * 109.46284 * 65.82096 * 11 10 9 25 25 H 1.09002 * 109.50645 * 180.87872 * 12 11 10 26 26 H 1.09000 * 109.53830 * 60.77991 * 12 11 10 27 27 H 0.96703 * 113.99722 * 299.80419 * 18 16 13 28 28 H 1.08996 * 109.46553 * 294.17550 * 19 10 9 29 29 H 1.08997 * 109.46767 * 54.15908 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 4.0013 -2.5737 0.1193 11 6 3.5180 -3.1975 1.3577 12 6 4.1624 -4.5758 1.5213 13 6 3.8039 -5.4480 0.3149 14 9 2.4177 -5.6299 0.2650 15 9 4.4359 -6.6906 0.4320 16 6 4.2752 -4.7529 -0.9655 17 1 5.3598 -4.6463 -0.9442 18 8 3.8946 -5.5338 -2.1000 19 6 3.6275 -3.3693 -1.0570 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.7596 -0.9326 22 1 3.8751 -0.6046 0.8405 23 1 3.7831 -2.5693 2.2082 24 1 2.4345 -3.3064 1.3106 25 1 3.7916 -5.0451 2.4326 26 1 5.2452 -4.4670 1.5828 27 1 4.2698 -6.4250 -2.1078 28 1 2.5435 -3.4775 -1.0927 29 1 3.9722 -2.8662 -1.9604 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306500028.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:56 Heat of formation + Delta-G solvation = -148.022083 kcal Electronic energy + Delta-G solvation = -16076.158497 eV Core-core repulsion = 13055.875476 eV Total energy + Delta-G solvation = -3020.283020 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.78117 -46.77259 -38.37301 -36.22020 -33.01092 -31.53094 -29.63328 -27.16876 -23.83147 -22.92794 -21.33150 -19.60776 -17.73381 -17.24911 -16.98825 -16.22419 -15.90982 -14.97734 -14.53025 -14.05463 -13.57349 -13.46658 -13.15058 -12.99199 -12.72807 -12.71490 -12.27308 -11.92217 -11.39700 -11.16638 -11.05056 -10.63597 -10.55637 -10.45668 -10.04907 -9.68146 -9.58325 -8.65591 -7.46783 -6.15720 -4.17578 3.23359 3.31838 3.34384 3.83908 3.94920 4.24006 4.34086 4.50188 4.75087 4.99546 5.16730 5.27189 5.49011 5.62567 5.76526 5.84332 6.12003 6.26730 6.54216 6.60866 6.77844 6.93556 7.41282 7.54610 7.81442 7.83419 8.36136 8.86198 9.45268 10.96973 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.047207 B = 0.008371 C = 0.008351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.992604 B = 3344.183178 C = 3351.952516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.286 1.286 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.158 3.842 10 N -0.532 5.532 11 C 0.057 3.943 12 C -0.154 4.154 13 C 0.253 3.747 14 F -0.189 7.189 15 F -0.210 7.210 16 C 0.079 3.921 17 H 0.087 0.913 18 O -0.550 6.550 19 C 0.066 3.934 20 H 0.265 0.735 21 H 0.032 0.968 22 H 0.032 0.968 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.379 0.621 28 H 0.063 0.937 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.975 -8.553 1.032 13.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.188 1.188 6 H -0.212 1.212 7 C -0.598 4.598 8 H 0.095 0.905 9 C 0.032 3.968 10 N -0.257 5.257 11 C -0.072 4.072 12 C -0.193 4.193 13 C 0.216 3.784 14 F -0.170 7.170 15 F -0.191 7.191 16 C 0.018 3.982 17 H 0.105 0.895 18 O -0.354 6.354 19 C -0.062 4.062 20 H 0.075 0.925 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.103 0.897 24 H 0.079 0.921 25 H 0.106 0.894 26 H 0.114 0.886 27 H 0.226 0.774 28 H 0.082 0.918 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.976 -7.909 0.892 12.762 hybrid contribution -0.393 0.149 0.202 0.466 sum 9.584 -7.759 1.093 12.380 Atomic orbital electron populations 1.69926 1.06412 1.27133 1.49741 1.24970 0.94704 0.99241 0.93990 0.86790 0.80395 0.83523 0.78647 1.20122 1.18819 1.21221 1.21671 0.90461 0.94938 1.52730 0.90528 1.20180 0.94903 0.84387 0.97343 1.62396 1.58798 1.04145 1.00410 1.21937 0.99166 0.91801 0.94275 1.22652 1.03947 0.96795 0.95884 1.22163 0.75096 0.80700 1.00446 1.93027 1.30788 1.95640 1.97578 1.92955 1.82192 1.46688 1.97275 1.22877 1.00074 0.92826 0.82406 0.89490 1.86563 1.75888 1.29465 1.43520 1.21749 1.00054 0.88953 0.95488 0.92548 0.94964 0.95016 0.89744 0.92148 0.89442 0.88573 0.77380 0.91850 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.96 55.43 0.77 -26.15 15 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 15 3 Si 0.88 20.79 27.37 -169.99 -4.65 16.13 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.26 -5.95 6.69 56.52 0.38 -5.58 15 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 7 C -0.56 -15.19 8.27 -34.44 -0.28 -15.47 15 8 H 0.08 2.30 6.10 -52.49 -0.32 1.98 15 9 C 0.16 3.62 4.19 -4.97 -0.02 3.59 15 10 N -0.53 -10.46 4.86 -236.11 -1.15 -11.60 15 11 C 0.06 1.03 4.92 -3.83 -0.02 1.01 15 12 C -0.15 -2.26 5.62 -26.65 -0.15 -2.41 15 13 C 0.25 4.02 1.81 -26.61 -0.05 3.97 15 14 F -0.19 -3.59 16.13 2.25 0.04 -3.55 15 15 F -0.21 -3.09 16.78 2.25 0.04 -3.05 15 16 C 0.08 1.25 3.21 -26.64 -0.09 1.16 15 17 H 0.09 1.20 8.14 -51.93 -0.42 0.77 15 18 O -0.55 -8.43 13.24 -35.23 -0.47 -8.90 15 19 C 0.07 1.27 4.66 -3.83 -0.02 1.26 15 20 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 21 H 0.03 0.74 7.49 -51.93 -0.39 0.36 15 22 H 0.03 0.71 7.29 -51.93 -0.38 0.34 15 23 H 0.08 1.45 8.12 -51.93 -0.42 1.03 15 24 H 0.06 1.29 6.46 -51.93 -0.34 0.95 15 25 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.10 1.22 8.14 -51.93 -0.42 0.80 15 27 H 0.38 4.11 8.81 45.56 0.40 4.52 15 28 H 0.06 1.43 6.60 -51.93 -0.34 1.09 15 29 H 0.09 1.65 8.08 -51.93 -0.42 1.23 15 LS Contribution 243.07 15.07 3.66 3.66 Total: -1.00 -30.29 243.07 -5.11 -35.40 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -2.63 Total: 2.96 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -0.72 Total: -4.90 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.37 Total: -37.75 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.47 Total: -8.90 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.07 Total: -6.60 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.65 Total: 16.13 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.29 -5.11 -35.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306500028.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.624 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds