Wall clock time and date at job start Mon Mar 30 2020 03:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99834 * 2 1 4 4 H 1.48501 * 109.46841 * 90.00095 * 3 2 1 5 5 H 1.48497 * 109.47155 * 209.99889 * 3 2 1 6 6 H 1.48498 * 109.47109 * 330.00185 * 3 2 1 7 7 C 1.37882 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99703 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99709 * 179.97438 * 7 2 1 10 10 N 1.46909 * 109.47053 * 174.99372 * 9 7 2 11 11 C 1.46854 * 110.99544 * 300.66704 * 10 9 7 12 12 C 1.53030 * 109.51979 * 185.83943 * 11 10 9 13 13 C 1.53121 * 109.28145 * 300.81756 * 12 11 10 14 14 F 1.39903 * 109.51987 * 297.75447 * 13 12 11 15 15 F 1.39895 * 109.52494 * 177.56130 * 13 12 11 16 16 C 1.53121 * 109.15968 * 57.65582 * 13 12 11 17 17 H 1.08999 * 109.53357 * 62.30680 * 16 13 12 18 18 O 1.42894 * 109.50549 * 182.41068 * 16 13 12 19 19 C 1.46842 * 110.99765 * 64.87217 * 10 9 7 20 20 H 0.97002 * 120.00104 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.47719 * 294.98808 * 9 7 2 22 22 H 1.08993 * 109.47535 * 54.99367 * 9 7 2 23 23 H 1.09001 * 109.45996 * 305.85290 * 11 10 9 24 24 H 1.08993 * 109.46284 * 65.82096 * 11 10 9 25 25 H 1.09002 * 109.50645 * 180.87872 * 12 11 10 26 26 H 1.09000 * 109.53830 * 60.77991 * 12 11 10 27 27 H 0.96703 * 113.99722 * 299.80419 * 18 16 13 28 28 H 1.08996 * 109.46553 * 294.17550 * 19 10 9 29 29 H 1.08997 * 109.46767 * 54.15908 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 4.0013 -2.5737 0.1193 11 6 3.5180 -3.1975 1.3577 12 6 4.1624 -4.5758 1.5213 13 6 3.8039 -5.4480 0.3149 14 9 2.4177 -5.6299 0.2650 15 9 4.4359 -6.6906 0.4320 16 6 4.2752 -4.7529 -0.9655 17 1 5.3598 -4.6463 -0.9442 18 8 3.8946 -5.5338 -2.1000 19 6 3.6275 -3.3693 -1.0570 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.7596 -0.9326 22 1 3.8751 -0.6046 0.8405 23 1 3.7831 -2.5693 2.2082 24 1 2.4345 -3.3064 1.3106 25 1 3.7916 -5.0451 2.4326 26 1 5.2452 -4.4670 1.5828 27 1 4.2698 -6.4250 -2.1078 28 1 2.5435 -3.4775 -1.0927 29 1 3.9722 -2.8662 -1.9604 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306500028.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:56 Heat of formation + Delta-G solvation = -172.752711 kcal Electronic energy + Delta-G solvation = -16077.230897 eV Core-core repulsion = 13055.875476 eV Total energy + Delta-G solvation = -3021.355421 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.07444 -48.08694 -39.84138 -37.56875 -34.92505 -33.18863 -31.07130 -28.99881 -25.51469 -24.30265 -22.98348 -21.11899 -19.21095 -18.84742 -18.49992 -17.52678 -17.26489 -16.67902 -16.24902 -15.64088 -14.96151 -14.89768 -14.66243 -14.40380 -14.33768 -14.10978 -13.87457 -13.41196 -13.09676 -12.80387 -12.61196 -12.23091 -12.15508 -11.96674 -11.75325 -11.68335 -10.93227 -10.79312 -9.21246 -8.31512 -6.38916 1.38390 1.40379 1.52217 2.34792 2.57176 2.65198 2.98127 3.04252 3.19454 3.46005 3.62055 3.96850 4.18152 4.33022 4.50226 4.56547 4.62852 4.84059 4.92337 5.00759 5.06326 5.12080 5.45503 5.96273 6.17814 6.24410 6.58715 6.68361 7.28194 8.85132 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.047207 B = 0.008371 C = 0.008351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.992604 B = 3344.183178 C = 3351.952516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.240 1.240 6 H -0.288 1.288 7 C -0.558 4.558 8 H 0.029 0.971 9 C 0.162 3.838 10 N -0.517 5.517 11 C 0.056 3.944 12 C -0.144 4.144 13 C 0.248 3.752 14 F -0.214 7.214 15 F -0.198 7.198 16 C 0.088 3.912 17 H 0.123 0.877 18 O -0.566 6.566 19 C 0.066 3.934 20 H 0.266 0.734 21 H 0.038 0.962 22 H 0.047 0.953 23 H 0.097 0.903 24 H 0.016 0.984 25 H 0.105 0.895 26 H 0.130 0.870 27 H 0.400 0.600 28 H 0.015 0.985 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.989 -8.385 1.454 15.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.777 3.223 4 H -0.188 1.188 5 H -0.163 1.163 6 H -0.215 1.215 7 C -0.597 4.597 8 H 0.047 0.953 9 C 0.035 3.965 10 N -0.241 5.241 11 C -0.073 4.073 12 C -0.182 4.182 13 C 0.211 3.789 14 F -0.195 7.195 15 F -0.179 7.179 16 C 0.028 3.972 17 H 0.140 0.860 18 O -0.373 6.373 19 C -0.063 4.063 20 H 0.075 0.925 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.115 0.885 24 H 0.034 0.966 25 H 0.124 0.876 26 H 0.148 0.852 27 H 0.251 0.749 28 H 0.034 0.966 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.020 -7.788 1.316 15.229 hybrid contribution -1.391 -0.032 0.047 1.392 sum 11.630 -7.820 1.363 14.081 Atomic orbital electron populations 1.70101 1.08663 1.28300 1.51870 1.26009 0.95533 1.03775 0.93593 0.85601 0.79546 0.77690 0.79423 1.18770 1.16305 1.21452 1.21917 0.92957 0.93142 1.51680 0.95310 1.20094 0.91625 0.86810 0.98019 1.62440 1.57579 1.02963 1.01083 1.21967 0.96938 0.94391 0.93995 1.22623 1.05619 0.93928 0.96011 1.22347 0.73919 0.81379 1.01206 1.92989 1.33030 1.95814 1.97701 1.92975 1.81729 1.45932 1.97264 1.22741 1.01293 0.90690 0.82481 0.85983 1.86517 1.76563 1.30999 1.43258 1.21697 0.97532 0.91498 0.95528 0.92489 0.94436 0.93529 0.88458 0.96557 0.87643 0.85206 0.74940 0.96621 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.27 13.96 21.45 0.30 -58.97 15 2 C 0.01 0.51 5.47 84.66 0.46 0.97 15 3 Si 0.95 42.46 27.37 68.60 1.88 44.34 15 4 H -0.26 -11.11 7.11 99.48 0.71 -10.41 15 5 H -0.24 -9.68 6.69 99.48 0.67 -9.02 15 6 H -0.29 -12.86 7.11 99.48 0.71 -12.15 15 7 C -0.56 -31.22 8.27 25.60 0.21 -31.00 15 8 H 0.03 1.84 6.10 -2.92 -0.02 1.83 15 9 C 0.16 7.23 4.19 85.55 0.36 7.58 15 10 N -0.52 -19.67 4.86 -900.93 -4.38 -24.05 15 11 C 0.06 1.98 4.92 86.32 0.42 2.40 15 12 C -0.14 -3.82 5.62 30.64 0.17 -3.65 15 13 C 0.25 7.43 1.81 30.68 0.06 7.48 15 14 F -0.21 -8.22 16.13 44.97 0.73 -7.50 15 15 F -0.20 -5.22 16.78 44.97 0.75 -4.46 15 16 C 0.09 2.61 3.21 30.65 0.10 2.71 15 17 H 0.12 2.83 8.14 -2.39 -0.02 2.81 15 18 O -0.57 -16.44 13.24 -148.98 -1.97 -18.42 15 19 C 0.07 2.54 4.66 86.33 0.40 2.95 15 20 H 0.27 15.50 8.31 -92.71 -0.77 14.73 15 21 H 0.04 1.65 7.49 -2.39 -0.02 1.63 15 22 H 0.05 1.97 7.29 -2.39 -0.02 1.95 15 23 H 0.10 3.19 8.12 -2.39 -0.02 3.17 15 24 H 0.02 0.72 6.46 -2.39 -0.02 0.71 15 25 H 0.11 2.47 8.14 -2.39 -0.02 2.45 15 26 H 0.13 2.66 8.14 -2.39 -0.02 2.64 15 27 H 0.40 7.71 8.81 -74.06 -0.65 7.06 15 28 H 0.02 0.74 6.60 -2.39 -0.02 0.73 15 29 H 0.09 3.31 8.08 -2.39 -0.02 3.29 15 Total: -1.00 -68.16 243.07 -0.03 -68.19 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.47 Total: 11.42 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 2.19 Total: -10.55 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -4.08 Total: -83.02 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -1.97 Total: -18.42 kcal Atomic # 9 Polarization: -13.44 SS G_CDS: 1.48 Total: -11.96 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.34 kcal Total: -68.16 -0.03 -68.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306500028.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.559 kcal (2) G-P(sol) polarization free energy of solvation -68.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds