Wall clock time and date at job start Mon Mar 30 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38598 * 120.07813 * 2 1 4 4 C 1.38889 * 117.97042 * 179.97438 * 3 2 1 5 5 C 1.38605 * 117.96815 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.07687 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.47206 * 94.99920 * 6 5 4 8 8 C 1.34772 * 119.99823 * 179.72209 * 7 6 5 9 9 O 1.21695 * 120.00176 * 0.27723 * 8 7 6 10 10 C 1.46375 * 120.00131 * 180.27515 * 8 7 6 11 11 H 1.08005 * 119.99733 * 353.94178 * 10 8 7 12 12 C 1.40042 * 120.00170 * 173.94085 * 10 8 7 13 13 N 1.30669 * 120.00455 * 6.15206 * 12 10 8 14 14 Si 1.86803 * 119.99867 * 186.14923 * 12 10 8 15 15 H 1.48498 * 109.47177 * 94.98772 * 14 12 10 16 16 H 1.48502 * 109.47127 * 214.98238 * 14 12 10 17 17 H 1.48493 * 109.47253 * 334.98410 * 14 12 10 18 18 N 1.31936 * 119.84410 * 0.27354 * 5 4 3 19 19 N 1.28350 * 122.18403 * 359.41908 * 18 5 4 20 20 H 1.09000 * 109.47107 * 89.99588 * 1 2 3 21 21 H 1.08998 * 109.47064 * 209.99725 * 1 2 3 22 22 H 1.08996 * 109.46698 * 329.99784 * 1 2 3 23 23 H 1.08000 * 121.01521 * 0.02562 * 3 2 1 24 24 H 1.08005 * 121.01878 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47180 * 334.99622 * 6 5 4 26 26 H 1.09008 * 109.46803 * 215.00131 * 6 5 4 27 27 H 0.96992 * 119.99679 * 359.97438 * 7 6 5 28 28 H 0.97000 * 120.00488 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2017 1.1993 0.0000 4 6 3.5896 1.1483 0.0005 5 6 4.1942 -0.0990 0.0005 6 6 5.6971 -0.2098 0.0017 7 7 6.1742 -0.3663 1.3780 8 6 7.4934 -0.4908 1.6238 9 8 8.2888 -0.4682 0.7029 10 6 7.9697 -0.6533 2.9983 11 1 7.2764 -0.5755 3.8228 12 6 9.3243 -0.9095 3.2443 13 7 10.1834 -0.8846 2.2600 14 14 9.9033 -1.2869 4.9798 15 1 9.9542 -2.7580 5.1757 16 1 11.2573 -0.7130 5.1857 17 1 8.9586 -0.6898 5.9576 18 7 3.4508 -1.1890 -0.0055 19 7 2.1682 -1.1417 -0.0004 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5139 23 1 1.6796 2.1448 0.0004 24 1 4.1799 2.0528 0.0010 25 1 6.1283 0.6925 -0.4320 26 1 5.9980 -1.0758 -0.5880 27 1 5.5403 -0.3840 2.1119 28 1 11.1216 -1.0624 2.4304 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306615120.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:41 Heat of formation + Delta-G solvation = 10.334904 kcal Electronic energy + Delta-G solvation = -13995.066218 eV Core-core repulsion = 11432.339258 eV Total energy + Delta-G solvation = -2562.726959 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.01899 -37.34497 -34.66888 -33.56147 -32.60286 -31.89023 -28.84747 -26.83112 -25.33624 -23.75774 -22.24629 -19.74704 -17.60584 -17.39605 -16.01648 -15.46021 -15.30181 -15.03483 -14.17633 -13.98993 -13.48115 -13.26175 -13.00567 -12.71992 -12.51887 -12.17108 -11.48394 -11.19988 -10.93695 -10.76418 -10.46598 -10.24021 -10.20894 -9.60388 -9.55453 -8.85750 -7.65321 -7.59063 -6.21171 -4.65289 0.83017 0.89076 3.14624 3.21638 3.25027 3.51905 3.97278 4.11912 4.41449 4.53962 4.56572 4.62981 4.95823 5.02994 5.13627 5.29748 5.32037 5.63668 5.72577 5.76270 5.95756 6.15346 6.34879 6.43659 7.42852 7.85275 8.00309 8.30162 8.81174 9.01143 9.46497 10.56730 10.74584 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.056184 B = 0.005486 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.243827 B = 5102.575225 C = 5322.044218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.056 3.944 3 C -0.123 4.123 4 C -0.101 4.101 5 C 0.064 3.936 6 C 0.185 3.815 7 N -0.760 5.760 8 C 0.557 3.443 9 O -0.579 6.579 10 C -0.544 4.544 11 H 0.068 0.932 12 C 0.088 3.912 13 N -0.767 5.767 14 Si 0.909 3.091 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.265 1.265 18 N -0.224 5.224 19 N -0.246 5.246 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.148 0.852 24 H 0.152 0.848 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.381 0.619 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.785 5.378 -2.123 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.088 4.088 3 C -0.152 4.152 4 C -0.131 4.131 5 C -0.081 4.081 6 C 0.059 3.941 7 N -0.417 5.417 8 C 0.361 3.639 9 O -0.461 6.461 10 C -0.580 4.580 11 H 0.086 0.914 12 C -0.132 4.132 13 N -0.396 5.396 14 Si 0.734 3.266 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.189 1.189 18 N -0.066 5.066 19 N -0.089 5.089 20 H 0.099 0.901 21 H 0.100 0.900 22 H 0.095 0.905 23 H 0.165 0.835 24 H 0.170 0.830 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.212 0.788 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.038 3.713 -2.897 15.758 hybrid contribution -0.001 1.453 1.174 1.868 sum -15.038 5.166 -1.723 15.994 Atomic orbital electron populations 1.20641 0.87727 1.03867 1.03362 1.22904 0.98992 0.90829 0.96123 1.22263 0.94638 0.99728 0.98554 1.22418 0.95151 0.99635 0.95862 1.23238 0.99397 0.90347 0.95157 1.19691 0.83247 1.02458 0.88743 1.46154 1.09045 1.82043 1.04418 1.18249 0.78687 0.76358 0.90586 1.90607 1.53615 1.55267 1.46660 1.20849 0.93832 1.52358 0.91008 0.91356 1.25703 0.96418 0.92966 0.98128 1.70019 1.02758 1.34759 1.32032 0.86336 0.78391 0.79129 0.82769 1.19731 1.20429 1.18908 1.73048 0.98887 1.27024 1.07682 1.73023 1.01806 1.24752 1.09270 0.90088 0.90040 0.90470 0.83450 0.82994 0.91186 0.90911 0.78791 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.20 36.01 0.37 -0.40 15 2 C 0.06 0.68 6.86 -82.41 -0.57 0.12 15 3 C -0.12 -1.31 9.87 -39.21 -0.39 -1.70 15 4 C -0.10 -1.30 9.85 -39.21 -0.39 -1.68 15 5 C 0.06 1.05 6.23 -82.41 -0.51 0.54 15 6 C 0.19 3.64 6.01 -5.19 -0.03 3.61 15 7 N -0.76 -17.41 5.54 -62.90 -0.35 -17.76 15 8 C 0.56 15.97 7.74 -12.99 -0.10 15.87 15 9 O -0.58 -18.76 15.05 5.19 0.08 -18.68 15 10 C -0.54 -15.49 9.53 -35.63 -0.34 -15.83 15 11 H 0.07 1.79 7.85 -52.48 -0.41 1.38 15 12 C 0.09 2.46 5.49 -17.37 -0.10 2.37 15 13 N -0.77 -23.08 11.85 55.55 0.66 -22.42 15 14 Si 0.91 20.28 29.56 -169.99 -5.03 15.25 15 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 17 H -0.26 -5.71 7.11 56.52 0.40 -5.31 15 18 N -0.22 -4.06 11.43 33.59 0.38 -3.68 15 19 N -0.25 -3.97 11.43 33.59 0.38 -3.58 15 20 H 0.08 0.53 8.14 -51.93 -0.42 0.11 15 21 H 0.08 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.08 0.42 8.09 -51.93 -0.42 0.00 15 23 H 0.15 1.00 8.06 -52.49 -0.42 0.57 15 24 H 0.15 1.60 8.06 -52.48 -0.42 1.18 15 25 H 0.07 1.33 8.05 -51.93 -0.42 0.91 15 26 H 0.07 1.56 8.14 -51.92 -0.42 1.13 15 27 H 0.38 7.99 8.44 -40.82 -0.34 7.64 15 28 H 0.27 7.31 8.29 -40.82 -0.34 6.97 15 LS Contribution 259.26 15.07 3.91 3.91 Total: -1.00 -35.61 259.26 -4.86 -40.47 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -2.84 Total: 3.60 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -2.05 Total: 2.90 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 1.08 Total: -47.44 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.08 Total: -18.68 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -35.61 -4.86 -40.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306615120.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.806 kcal (2) G-P(sol) polarization free energy of solvation -35.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds