Wall clock time and date at job start Mon Mar 30 2020 03:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31232 * 1 3 3 Si 1.86801 * 120.00304 * 2 1 4 4 H 1.48496 * 109.46969 * 89.99777 * 3 2 1 5 5 H 1.48496 * 109.46968 * 209.99834 * 3 2 1 6 6 H 1.48501 * 109.46777 * 329.99987 * 3 2 1 7 7 C 1.39106 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99781 * 17.95908 * 7 2 1 9 9 N 1.37175 * 120.00444 * 197.95935 * 7 2 1 10 10 C 1.35845 * 119.92111 * 30.19695 * 9 7 2 11 11 N 1.30431 * 121.52220 * 180.10092 * 10 9 7 12 12 C 1.34423 * 121.27933 * 0.03143 * 11 10 9 13 13 C 1.38081 * 119.68793 * 359.79173 * 12 11 10 14 14 C 1.34913 * 119.92816 * 209.92637 * 9 7 2 15 15 O 1.22076 * 120.62150 * 359.91566 * 14 9 7 16 16 C 1.50369 * 121.88970 * 180.32068 * 13 12 11 17 17 C 1.52952 * 110.34852 * 339.82093 * 16 13 12 18 18 C 1.53453 * 108.73735 * 50.44467 * 17 16 13 19 19 N 1.38204 * 119.40657 * 179.57212 * 12 11 10 20 20 H 0.96994 * 120.00420 * 175.34090 * 1 2 3 21 21 H 1.08004 * 119.24168 * 0.12606 * 10 9 7 22 22 H 1.08998 * 109.32673 * 219.55143 * 16 13 12 23 23 H 1.09000 * 109.17993 * 99.99853 * 16 13 12 24 24 H 1.08997 * 109.59430 * 290.67584 * 17 16 13 25 25 H 1.08995 * 109.71964 * 170.29045 * 17 16 13 26 26 H 1.08998 * 109.77435 * 177.70180 * 18 17 16 27 27 H 1.08997 * 109.81625 * 56.92981 * 18 17 16 28 28 H 0.96997 * 120.45840 * 346.23943 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2464 1.6177 0.0000 4 1 2.4939 2.0463 1.4000 5 1 3.5439 1.4400 -0.7000 6 1 1.4438 2.6526 -0.7001 7 6 2.0078 -1.2047 0.0005 8 1 1.5072 -2.1173 -0.2874 9 7 3.3294 -1.2336 0.3668 10 6 3.8028 -0.3337 1.2676 11 7 5.0538 -0.3316 1.6366 12 6 5.9296 -1.2219 1.1392 13 6 5.5028 -2.1624 0.2228 14 6 4.1550 -2.1592 -0.1642 15 8 3.7373 -2.9761 -0.9694 16 6 6.4382 -3.1855 -0.3598 17 6 7.8894 -2.7271 -0.2075 18 6 8.1266 -2.3182 1.2524 19 7 7.2483 -1.1790 1.5506 20 1 -0.4850 -0.8372 -0.0682 21 1 3.1275 0.3968 1.6883 22 1 6.2117 -3.3205 -1.4174 23 1 6.3026 -4.1329 0.1619 24 1 8.0737 -1.8740 -0.8604 25 1 8.5624 -3.5424 -0.4726 26 1 9.1679 -2.0267 1.3892 27 1 7.8871 -3.1514 1.9131 28 1 7.5892 -0.4073 2.0292 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306635753.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:03 Heat of formation + Delta-G solvation = 3.273810 kcal Electronic energy + Delta-G solvation = -15167.158909 eV Core-core repulsion = 12604.125758 eV Total energy + Delta-G solvation = -2563.033152 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.75260 -37.72372 -36.22387 -34.17411 -32.26652 -31.71523 -29.50405 -25.95112 -24.56856 -23.44245 -21.86361 -20.20209 -18.73721 -17.89921 -16.71645 -15.80242 -15.23068 -15.06087 -14.22528 -13.95766 -13.65499 -13.45085 -12.98966 -12.91598 -12.75744 -11.97709 -11.59259 -11.14173 -10.86754 -10.65875 -10.42340 -10.23119 -10.05236 -9.30855 -8.97693 -8.76003 -8.26364 -7.42265 -6.91662 -4.65296 1.79353 2.88643 2.97467 3.14144 3.25654 3.63537 3.76743 4.11385 4.36849 4.94973 5.07838 5.22114 5.26879 5.39803 5.71506 5.85406 5.92111 6.04891 6.15573 6.37842 6.58853 6.61603 6.79036 7.37644 7.43121 7.62917 7.74974 8.06583 8.31699 8.61674 8.99802 9.38178 9.96748 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.043254 B = 0.010699 C = 0.009169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.179651 B = 2616.411632 C = 3053.056098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.027 3.973 3 Si 1.042 2.958 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.401 4.401 8 H 0.116 0.884 9 N -0.342 5.342 10 C 0.286 3.714 11 N -0.590 5.590 12 C 0.422 3.578 13 C -0.370 4.370 14 C 0.499 3.501 15 O -0.575 6.575 16 C -0.026 4.026 17 C -0.136 4.136 18 C 0.133 3.867 19 N -0.727 5.727 20 H 0.289 0.711 21 H 0.187 0.813 22 H 0.066 0.934 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.904 0.802 3.304 12.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.188 4.188 3 Si 0.867 3.133 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.531 4.531 8 H 0.134 0.866 9 N -0.039 5.039 10 C 0.007 3.993 11 N -0.322 5.322 12 C 0.194 3.806 13 C -0.384 4.384 14 C 0.305 3.695 15 O -0.460 6.460 16 C -0.065 4.065 17 C -0.175 4.175 18 C 0.008 3.992 19 N -0.362 5.362 20 H 0.100 0.900 21 H 0.204 0.796 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 11.724 2.198 3.273 12.369 hybrid contribution -0.160 -1.900 -0.423 1.953 sum 11.564 0.298 2.850 11.914 Atomic orbital electron populations 1.70676 1.06199 1.32635 1.35375 1.26806 0.96505 1.02173 0.93288 0.84012 0.75868 0.74860 0.78594 1.19090 1.19314 1.19503 1.21325 0.83559 0.99305 1.48891 0.86611 1.43117 1.11202 1.22743 1.26836 1.24357 0.91827 0.94335 0.88768 1.67754 1.01656 1.30348 1.32484 1.17928 0.84872 0.89653 0.88180 1.20254 0.95810 1.09981 1.12329 1.16648 0.85843 0.83522 0.83477 1.90763 1.77874 1.40370 1.36973 1.19542 0.90841 0.95580 1.00499 1.21909 0.97762 1.01329 0.96468 1.21476 0.92860 0.88722 0.96182 1.43952 1.06826 1.21403 1.64010 0.89954 0.79644 0.91509 0.92903 0.91570 0.91055 0.90534 0.92497 0.76481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.58 13.68 55.50 0.76 -20.82 15 2 C 0.03 0.70 5.33 -17.49 -0.09 0.61 15 3 Si 1.04 22.33 25.06 -169.99 -4.26 18.07 15 4 H -0.26 -5.03 6.50 56.52 0.37 -4.67 15 5 H -0.27 -5.90 7.06 56.52 0.40 -5.50 15 6 H -0.27 -5.62 7.11 56.52 0.40 -5.21 15 7 C -0.40 -10.97 9.42 -14.84 -0.14 -11.11 15 8 H 0.12 3.45 7.77 -52.49 -0.41 3.04 15 9 N -0.34 -8.93 2.53 -65.95 -0.17 -9.10 15 10 C 0.29 6.63 8.77 -89.70 -0.79 5.85 15 11 N -0.59 -12.86 10.44 -13.31 -0.14 -13.00 15 12 C 0.42 8.79 7.48 -154.43 -1.15 7.63 15 13 C -0.37 -8.46 5.79 -104.09 -0.60 -9.07 15 14 C 0.50 13.43 7.36 -15.45 -0.11 13.32 15 15 O -0.58 -17.08 16.19 4.85 0.08 -17.00 15 16 C -0.03 -0.50 5.49 -28.07 -0.15 -0.65 15 17 C -0.14 -1.91 6.14 -26.52 -0.16 -2.07 15 18 C 0.13 1.68 7.10 -3.59 -0.03 1.66 15 19 N -0.73 -11.52 5.78 -59.92 -0.35 -11.87 15 20 H 0.29 7.48 8.73 -40.82 -0.36 7.12 15 21 H 0.19 3.97 4.38 -52.48 -0.23 3.74 15 22 H 0.07 1.35 7.86 -51.93 -0.41 0.94 15 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.07 0.96 8.14 -51.93 -0.42 0.53 15 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 15 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 28 H 0.40 5.47 8.96 -40.82 -0.37 5.10 15 LS Contribution 235.62 15.07 3.55 3.55 Total: -1.00 -30.94 235.62 -6.47 -37.41 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -2.71 Total: 6.59 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -3.23 Total: 6.17 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.11 Total: -54.79 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.08 Total: -17.00 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.26 Total: 18.07 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.94 -6.47 -37.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306635753.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.683 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds