Wall clock time and date at job start Mon Mar 30 2020 03:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31232 * 1 3 3 Si 1.86801 * 120.00304 * 2 1 4 4 H 1.48496 * 109.46969 * 89.99777 * 3 2 1 5 5 H 1.48496 * 109.46968 * 209.99834 * 3 2 1 6 6 H 1.48501 * 109.46777 * 329.99987 * 3 2 1 7 7 C 1.39106 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99781 * 17.95908 * 7 2 1 9 9 N 1.37175 * 120.00444 * 197.95935 * 7 2 1 10 10 C 1.35845 * 119.92111 * 30.19695 * 9 7 2 11 11 N 1.30431 * 121.52220 * 180.10092 * 10 9 7 12 12 C 1.34423 * 121.27933 * 0.03143 * 11 10 9 13 13 C 1.38081 * 119.68793 * 359.79173 * 12 11 10 14 14 C 1.34913 * 119.92816 * 209.92637 * 9 7 2 15 15 O 1.22076 * 120.62150 * 359.91566 * 14 9 7 16 16 C 1.50369 * 121.88970 * 180.32068 * 13 12 11 17 17 C 1.52952 * 110.34852 * 339.82093 * 16 13 12 18 18 C 1.53453 * 108.73735 * 50.44467 * 17 16 13 19 19 N 1.38204 * 119.40657 * 179.57212 * 12 11 10 20 20 H 0.96994 * 120.00420 * 175.34090 * 1 2 3 21 21 H 1.08004 * 119.24168 * 0.12606 * 10 9 7 22 22 H 1.08998 * 109.32673 * 219.55143 * 16 13 12 23 23 H 1.09000 * 109.17993 * 99.99853 * 16 13 12 24 24 H 1.08997 * 109.59430 * 290.67584 * 17 16 13 25 25 H 1.08995 * 109.71964 * 170.29045 * 17 16 13 26 26 H 1.08998 * 109.77435 * 177.70180 * 18 17 16 27 27 H 1.08997 * 109.81625 * 56.92981 * 18 17 16 28 28 H 0.96997 * 120.45840 * 346.23943 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2464 1.6177 0.0000 4 1 2.4939 2.0463 1.4000 5 1 3.5439 1.4400 -0.7000 6 1 1.4438 2.6526 -0.7001 7 6 2.0078 -1.2047 0.0005 8 1 1.5072 -2.1173 -0.2874 9 7 3.3294 -1.2336 0.3668 10 6 3.8028 -0.3337 1.2676 11 7 5.0538 -0.3316 1.6366 12 6 5.9296 -1.2219 1.1392 13 6 5.5028 -2.1624 0.2228 14 6 4.1550 -2.1592 -0.1642 15 8 3.7373 -2.9761 -0.9694 16 6 6.4382 -3.1855 -0.3598 17 6 7.8894 -2.7271 -0.2075 18 6 8.1266 -2.3182 1.2524 19 7 7.2483 -1.1790 1.5506 20 1 -0.4850 -0.8372 -0.0682 21 1 3.1275 0.3968 1.6883 22 1 6.2117 -3.3205 -1.4174 23 1 6.3026 -4.1329 0.1619 24 1 8.0737 -1.8740 -0.8604 25 1 8.5624 -3.5424 -0.4726 26 1 9.1679 -2.0267 1.3892 27 1 7.8871 -3.1514 1.9131 28 1 7.5892 -0.4073 2.0292 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306635753.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:02 Heat of formation + Delta-G solvation = -19.221695 kcal Electronic energy + Delta-G solvation = -15168.134387 eV Core-core repulsion = 12604.125758 eV Total energy + Delta-G solvation = -2564.008630 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.62543 -39.27335 -38.19893 -35.97039 -34.09030 -33.27708 -31.16551 -27.74744 -26.23902 -25.05325 -23.62447 -21.74368 -20.56136 -19.63699 -18.50414 -17.56662 -17.05781 -16.71947 -15.78452 -15.52143 -15.40423 -15.07021 -14.70624 -14.47388 -14.32978 -13.71464 -13.30494 -12.76544 -12.29878 -12.25131 -11.98122 -11.79842 -11.73586 -11.13557 -10.80989 -10.73591 -9.98303 -9.43988 -8.62839 -6.75180 -0.01151 1.05685 1.22492 1.39932 1.57858 2.00301 2.15452 2.29393 2.47046 3.04714 3.46257 3.91561 4.07865 4.12541 4.17940 4.42814 4.54749 4.72910 4.83545 4.92654 5.08338 5.22527 5.32167 5.33775 5.60360 5.80850 5.94814 6.25847 6.64961 6.73513 7.21140 7.38675 7.93927 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.043254 B = 0.010699 C = 0.009169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.179651 B = 2616.411632 C = 3053.056098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.003 3.997 3 Si 1.072 2.928 4 H -0.213 1.213 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.436 4.436 8 H 0.066 0.934 9 N -0.359 5.359 10 C 0.302 3.698 11 N -0.576 5.576 12 C 0.430 3.570 13 C -0.385 4.385 14 C 0.470 3.530 15 O -0.628 6.628 16 C -0.030 4.030 17 C -0.127 4.127 18 C 0.127 3.873 19 N -0.706 5.706 20 H 0.277 0.723 21 H 0.208 0.792 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.109 0.891 26 H 0.130 0.870 27 H 0.065 0.935 28 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.696 2.591 5.158 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.207 4.207 3 Si 0.889 3.111 4 H -0.136 1.136 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.565 4.565 8 H 0.085 0.915 9 N -0.058 5.058 10 C 0.022 3.978 11 N -0.308 5.308 12 C 0.199 3.801 13 C -0.398 4.398 14 C 0.278 3.722 15 O -0.517 6.517 16 C -0.069 4.069 17 C -0.165 4.165 18 C 0.003 3.997 19 N -0.339 5.339 20 H 0.088 0.912 21 H 0.224 0.776 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.128 0.872 26 H 0.148 0.852 27 H 0.083 0.917 28 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 15.584 3.988 5.190 16.903 hybrid contribution -1.122 -2.545 -0.933 2.934 sum 14.462 1.443 4.257 15.145 Atomic orbital electron populations 1.70754 1.06776 1.31908 1.37329 1.28047 0.96421 1.04561 0.91650 0.83731 0.74305 0.71509 0.81553 1.13629 1.20422 1.18222 1.20916 0.84696 0.98466 1.52429 0.91549 1.43071 1.10638 1.23821 1.28246 1.24932 0.92604 0.93059 0.87245 1.67929 1.01104 1.30047 1.31673 1.18139 0.86792 0.88118 0.87050 1.20581 0.94509 1.11647 1.13055 1.17423 0.87490 0.83575 0.83699 1.90700 1.78948 1.42515 1.39541 1.19663 0.93685 0.94833 0.98707 1.21903 0.94370 1.02595 0.97650 1.21885 0.94792 0.87925 0.95059 1.44206 1.04737 1.22861 1.62125 0.91180 0.77574 0.93895 0.92892 0.91754 0.87242 0.85188 0.91689 0.74565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.75 13.68 21.68 0.30 -45.45 15 2 C 0.00 0.17 5.33 84.99 0.45 0.63 15 3 Si 1.07 43.55 25.06 68.60 1.72 45.27 15 4 H -0.21 -6.95 6.50 99.48 0.65 -6.30 15 5 H -0.28 -11.75 7.06 99.48 0.70 -11.05 15 6 H -0.26 -9.99 7.11 99.48 0.71 -9.29 15 7 C -0.44 -25.35 9.42 84.07 0.79 -24.56 15 8 H 0.07 4.39 7.77 -2.91 -0.02 4.37 15 9 N -0.36 -19.31 2.53 -480.55 -1.22 -20.53 15 10 C 0.30 13.57 8.77 180.03 1.58 15.15 15 11 N -0.58 -23.39 10.44 -196.03 -2.05 -25.43 15 12 C 0.43 16.65 7.48 132.47 0.99 17.64 15 13 C -0.38 -17.41 5.79 -19.52 -0.11 -17.52 15 14 C 0.47 26.29 7.36 84.70 0.62 26.92 15 15 O -0.63 -39.94 16.19 -5.56 -0.09 -40.03 15 16 C -0.03 -1.12 5.49 29.73 0.16 -0.96 15 17 C -0.13 -3.02 6.14 30.73 0.19 -2.83 15 18 C 0.13 2.46 7.10 86.46 0.61 3.07 15 19 N -0.71 -18.75 5.78 -343.49 -1.98 -20.74 15 20 H 0.28 15.33 8.73 -92.71 -0.81 14.52 15 21 H 0.21 8.27 4.38 -2.91 -0.01 8.26 15 22 H 0.04 1.77 7.86 -2.39 -0.02 1.75 15 23 H 0.05 1.92 8.14 -2.39 -0.02 1.90 15 24 H 0.06 1.59 8.14 -2.39 -0.02 1.57 15 25 H 0.11 1.84 8.14 -2.39 -0.02 1.82 15 26 H 0.13 1.33 8.14 -2.39 -0.02 1.32 15 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 15 28 H 0.42 8.88 8.96 -92.71 -0.83 8.05 15 Total: -1.00 -73.46 235.62 2.23 -71.23 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.26 Total: 18.15 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 5.29 Total: 17.54 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -4.95 Total: -112.15 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.09 Total: -40.03 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.72 Total: 45.27 kcal Total: -73.46 2.23 -71.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306635753.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.005 kcal (2) G-P(sol) polarization free energy of solvation -73.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds