Wall clock time and date at job start Mon Mar 30 2020 02:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35973 * 117.00002 * 2 1 4 4 C 1.39180 * 119.87154 * 0.02562 * 3 2 1 5 5 C 1.38173 * 120.47687 * 179.97438 * 4 3 2 6 6 C 1.38496 * 120.20442 * 0.02562 * 5 4 3 7 7 O 1.35706 * 120.13370 * 179.97438 * 6 5 4 8 8 C 1.40904 * 119.73031 * 359.97438 * 6 5 4 9 9 C 1.41819 * 120.22586 * 179.97438 * 8 6 5 10 10 N 1.32099 * 120.00096 * 359.72221 * 9 8 6 11 11 C 1.32691 * 120.00201 * 180.28012 * 10 9 8 12 12 H 1.08002 * 120.00080 * 359.97438 * 11 10 9 13 13 C 1.40700 * 120.00266 * 179.97438 * 11 10 9 14 14 N 1.30554 * 119.99956 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99886 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00385 * 15 13 11 17 17 H 1.48498 * 109.47176 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00020 * 15 13 11 19 19 C 1.38027 * 119.86860 * 180.25314 * 3 2 1 20 20 H 1.09010 * 109.47041 * 60.00061 * 1 2 3 21 21 H 1.08995 * 109.47424 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47226 * 300.00399 * 1 2 3 23 23 H 1.07999 * 119.76494 * 359.97183 * 4 3 2 24 24 H 1.07994 * 119.90242 * 179.97438 * 5 4 3 25 25 H 0.96704 * 114.00636 * 269.98104 * 7 6 5 26 26 H 1.08002 * 120.00131 * 180.02562 * 9 8 6 27 27 H 0.96996 * 120.00260 * 179.97438 * 14 13 11 28 28 H 1.07998 * 120.10864 * 0.02650 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2856 2.3771 0.0005 5 6 1.8999 3.6148 0.0011 6 6 3.2818 3.7068 0.0006 7 8 3.8836 4.9231 0.0006 8 6 4.0603 2.5324 0.0000 9 6 5.4761 2.6143 -0.0011 10 7 6.0694 3.7946 -0.0071 11 6 7.3941 3.8713 -0.0138 12 1 7.9873 2.9688 -0.0138 13 6 8.0260 5.1284 -0.0208 14 7 7.3090 6.2194 -0.0212 15 14 9.8908 5.2363 -0.0294 16 1 10.4201 4.5620 -1.2421 17 1 10.3041 6.6626 -0.0354 18 1 10.4309 4.5701 1.1829 19 6 3.4248 1.2806 -0.0053 20 1 -0.3634 0.5139 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 0.2075 2.3137 0.0005 24 1 1.3006 4.5132 0.0011 25 1 4.0580 5.2758 -0.8828 26 1 6.0693 1.7118 -0.0019 27 1 7.7446 7.0861 -0.0257 28 1 4.0126 0.3746 -0.0099 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306704931.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:32 Heat of formation + Delta-G solvation = -46.507475 kcal Electronic energy + Delta-G solvation = -14221.317865 eV Core-core repulsion = 11623.833284 eV Total energy + Delta-G solvation = -2597.484581 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.23398 -37.47378 -35.28088 -34.49939 -32.83117 -30.25481 -28.54812 -26.40612 -25.52341 -22.34251 -21.38470 -19.42754 -17.51540 -16.88008 -16.73894 -15.78082 -15.18992 -15.14578 -14.11360 -13.96053 -13.46856 -12.93790 -12.63760 -12.14929 -11.96665 -11.88602 -11.73129 -11.42335 -11.10710 -10.75978 -10.67902 -10.46779 -10.04766 -9.22621 -9.08857 -7.81861 -7.38058 -7.33526 -7.06748 -4.60361 2.06913 2.41778 2.79182 2.79672 2.83102 3.52707 3.65426 3.90010 4.66788 5.36900 5.44749 5.51687 5.62810 5.71409 5.75183 5.95880 6.33195 6.42938 6.47522 6.59723 7.02732 7.14216 7.18856 7.29539 7.39079 7.51547 7.90990 7.96710 8.19486 8.62990 9.17503 9.50979 10.35308 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.064247 B = 0.006195 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.711164 B = 4518.578646 C = 4936.605767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.328 6.328 3 C 0.129 3.871 4 C -0.274 4.274 5 C -0.097 4.097 6 C 0.028 3.972 7 O -0.461 6.461 8 C 0.078 3.922 9 C -0.215 4.215 10 N -0.296 5.296 11 C -0.208 4.208 12 H 0.061 0.939 13 C 0.065 3.935 14 N -0.701 5.701 15 Si 0.937 3.063 16 H -0.256 1.256 17 H -0.268 1.268 18 H -0.256 1.256 19 C -0.208 4.208 20 H 0.048 0.952 21 H 0.088 0.912 22 H 0.049 0.951 23 H 0.108 0.892 24 H 0.109 0.891 25 H 0.366 0.634 26 H 0.058 0.942 27 H 0.294 0.706 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.095 -2.424 -1.578 5.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.242 6.242 3 C 0.085 3.915 4 C -0.294 4.294 5 C -0.116 4.116 6 C -0.019 4.019 7 O -0.267 6.267 8 C 0.076 3.924 9 C -0.375 4.375 10 N -0.008 5.008 11 C -0.373 4.373 12 H 0.079 0.921 13 C -0.166 4.166 14 N -0.321 5.321 15 Si 0.758 3.242 16 H -0.180 1.180 17 H -0.193 1.193 18 H -0.180 1.180 19 C -0.229 4.229 20 H 0.067 0.933 21 H 0.106 0.894 22 H 0.067 0.933 23 H 0.126 0.874 24 H 0.127 0.873 25 H 0.220 0.780 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.470 -1.689 -0.959 4.874 hybrid contribution 0.955 -0.504 -0.470 1.178 sum -3.514 -2.193 -1.428 4.382 Atomic orbital electron populations 1.22851 0.79921 1.02499 1.00902 1.86007 1.20202 1.28313 1.89708 1.18704 0.91977 0.83080 0.97698 1.20513 0.98126 0.91980 1.18777 1.20905 0.94103 0.96435 1.00131 1.18487 0.89018 0.85697 1.08661 1.84873 1.80428 1.30018 1.31430 1.17939 0.93240 0.90696 0.90550 1.21060 0.91315 0.91433 1.33723 1.67090 1.10761 1.26793 0.96194 1.21136 0.89970 0.92701 1.33515 0.92148 1.26692 1.02881 0.94644 0.92368 1.69636 1.39857 0.99486 1.23143 0.85840 0.78537 0.78935 0.80859 1.17995 1.19264 1.17999 1.20028 0.90472 0.97167 1.15217 0.93305 0.89363 0.93280 0.87375 0.87277 0.78001 0.92435 0.89447 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 15 2 O -0.33 -6.07 10.49 -19.65 -0.21 -6.28 15 3 C 0.13 2.71 6.67 -39.31 -0.26 2.45 15 4 C -0.27 -5.42 9.03 -39.26 -0.35 -5.78 15 5 C -0.10 -2.05 9.96 -39.51 -0.39 -2.44 15 6 C 0.03 0.69 6.73 -38.48 -0.26 0.43 15 7 O -0.46 -11.53 11.25 -18.82 -0.21 -11.74 15 8 C 0.08 1.97 5.75 -106.71 -0.61 1.36 15 9 C -0.21 -5.84 10.16 -16.07 -0.16 -6.01 15 10 N -0.30 -8.30 7.66 -11.47 -0.09 -8.39 15 11 C -0.21 -5.41 9.74 -16.25 -0.16 -5.57 15 12 H 0.06 1.51 7.75 -52.49 -0.41 1.10 15 13 C 0.07 1.51 5.53 -17.17 -0.09 1.42 15 14 N -0.70 -16.80 13.58 55.59 0.76 -16.04 15 15 Si 0.94 16.50 29.57 -169.99 -5.03 11.47 15 16 H -0.26 -4.42 7.11 56.52 0.40 -4.02 15 17 H -0.27 -4.47 7.11 56.52 0.40 -4.07 15 18 H -0.26 -4.48 7.11 56.52 0.40 -4.08 15 19 C -0.21 -4.79 9.71 -38.85 -0.38 -5.17 15 20 H 0.05 0.60 7.65 -51.92 -0.40 0.20 15 21 H 0.09 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.05 0.61 7.65 -51.93 -0.40 0.21 15 23 H 0.11 1.80 6.26 -52.49 -0.33 1.47 15 24 H 0.11 2.04 8.06 -52.49 -0.42 1.62 15 25 H 0.37 8.26 9.06 45.56 0.41 8.67 15 26 H 0.06 1.54 7.95 -52.49 -0.42 1.13 15 27 H 0.29 6.10 8.29 -40.82 -0.34 5.76 15 28 H 0.11 2.50 8.06 -52.49 -0.42 2.08 15 LS Contribution 255.84 15.07 3.86 3.86 Total: -1.00 -29.90 255.84 -4.54 -34.44 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -1.94 Total: 10.54 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -1.69 Total: -17.87 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.67 Total: -24.43 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.42 Total: -18.01 kcal Atomic # 14 Polarization: 16.50 SS G_CDS: -5.03 Total: 11.47 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.90 -4.54 -34.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306704931.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.065 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds