Wall clock time and date at job start Mon Mar 30 2020 02:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35973 * 117.00002 * 2 1 4 4 C 1.39180 * 119.87154 * 0.02562 * 3 2 1 5 5 C 1.38173 * 120.47687 * 179.97438 * 4 3 2 6 6 C 1.38496 * 120.20442 * 0.02562 * 5 4 3 7 7 O 1.35706 * 120.13370 * 179.97438 * 6 5 4 8 8 C 1.40904 * 119.73031 * 359.97438 * 6 5 4 9 9 C 1.41819 * 120.22586 * 179.97438 * 8 6 5 10 10 N 1.32099 * 120.00096 * 359.72221 * 9 8 6 11 11 C 1.32691 * 120.00201 * 180.28012 * 10 9 8 12 12 H 1.08002 * 120.00080 * 359.97438 * 11 10 9 13 13 C 1.40700 * 120.00266 * 179.97438 * 11 10 9 14 14 N 1.30554 * 119.99956 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99886 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00385 * 15 13 11 17 17 H 1.48498 * 109.47176 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00020 * 15 13 11 19 19 C 1.38027 * 119.86860 * 180.25314 * 3 2 1 20 20 H 1.09010 * 109.47041 * 60.00061 * 1 2 3 21 21 H 1.08995 * 109.47424 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47226 * 300.00399 * 1 2 3 23 23 H 1.07999 * 119.76494 * 359.97183 * 4 3 2 24 24 H 1.07994 * 119.90242 * 179.97438 * 5 4 3 25 25 H 0.96704 * 114.00636 * 269.98104 * 7 6 5 26 26 H 1.08002 * 120.00131 * 180.02562 * 9 8 6 27 27 H 0.96996 * 120.00260 * 179.97438 * 14 13 11 28 28 H 1.07998 * 120.10864 * 0.02650 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2856 2.3771 0.0005 5 6 1.8999 3.6148 0.0011 6 6 3.2818 3.7068 0.0006 7 8 3.8836 4.9231 0.0006 8 6 4.0603 2.5324 0.0000 9 6 5.4761 2.6143 -0.0011 10 7 6.0694 3.7946 -0.0071 11 6 7.3941 3.8713 -0.0138 12 1 7.9873 2.9688 -0.0138 13 6 8.0260 5.1284 -0.0208 14 7 7.3090 6.2194 -0.0212 15 14 9.8908 5.2363 -0.0294 16 1 10.4201 4.5620 -1.2421 17 1 10.3041 6.6626 -0.0354 18 1 10.4309 4.5701 1.1829 19 6 3.4248 1.2806 -0.0053 20 1 -0.3634 0.5139 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 0.2075 2.3137 0.0005 24 1 1.3006 4.5132 0.0011 25 1 4.0580 5.2758 -0.8828 26 1 6.0693 1.7118 -0.0019 27 1 7.7446 7.0861 -0.0257 28 1 4.0126 0.3746 -0.0099 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306704931.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:32 Heat of formation + Delta-G solvation = -68.042942 kcal Electronic energy + Delta-G solvation = -14222.251713 eV Core-core repulsion = 11623.833284 eV Total energy + Delta-G solvation = -2598.418429 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.84712 -39.15495 -37.18723 -36.26955 -34.67476 -32.02358 -30.14462 -27.73944 -27.36404 -24.12903 -23.13395 -21.18046 -19.40745 -18.65161 -18.41590 -17.49698 -16.66604 -16.50173 -15.86895 -15.65732 -15.14649 -14.61734 -14.32872 -13.83064 -13.67040 -13.45559 -13.29119 -12.96068 -12.72552 -12.34589 -12.06996 -12.04371 -11.58899 -10.97297 -10.91353 -9.63614 -9.37669 -9.12185 -8.78842 -6.57891 0.32313 0.66296 1.32469 1.32950 1.51454 1.96517 2.07138 2.53489 2.89153 3.57066 3.89304 4.05422 4.31095 4.43509 4.48431 4.61754 4.62766 4.70997 4.79632 4.82279 5.13855 5.37214 5.40165 5.50544 5.60516 5.72075 6.07374 6.13061 6.64481 6.68708 7.34392 7.79537 8.38819 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.064247 B = 0.006195 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.711164 B = 4518.578646 C = 4936.605767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.135 3.865 4 C -0.255 4.255 5 C -0.090 4.090 6 C -0.002 4.002 7 O -0.476 6.476 8 C 0.050 3.950 9 C -0.250 4.250 10 N -0.320 5.320 11 C -0.242 4.242 12 H 0.061 0.939 13 C 0.027 3.973 14 N -0.735 5.735 15 Si 1.019 2.981 16 H -0.250 1.250 17 H -0.246 1.246 18 H -0.254 1.254 19 C -0.222 4.222 20 H 0.063 0.937 21 H 0.121 0.879 22 H 0.061 0.939 23 H 0.152 0.848 24 H 0.139 0.861 25 H 0.369 0.631 26 H 0.043 0.957 27 H 0.310 0.690 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 -2.359 -1.630 6.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.090 3.910 4 C -0.274 4.274 5 C -0.108 4.108 6 C -0.048 4.048 7 O -0.284 6.284 8 C 0.049 3.951 9 C -0.411 4.411 10 N -0.032 5.032 11 C -0.408 4.408 12 H 0.078 0.922 13 C -0.201 4.201 14 N -0.356 5.356 15 Si 0.835 3.165 16 H -0.173 1.173 17 H -0.169 1.169 18 H -0.178 1.178 19 C -0.243 4.243 20 H 0.081 0.919 21 H 0.139 0.861 22 H 0.080 0.920 23 H 0.169 0.831 24 H 0.156 0.844 25 H 0.223 0.777 26 H 0.061 0.939 27 H 0.122 0.878 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.719 -1.638 -1.013 6.035 hybrid contribution 1.056 -0.638 -0.455 1.315 sum -4.664 -2.275 -1.468 5.393 Atomic orbital electron populations 1.23308 0.76680 1.05299 1.02144 1.86008 1.23438 1.26877 1.89136 1.18735 0.91382 0.84670 0.96195 1.20976 1.00205 0.90697 1.15521 1.21188 0.92777 0.98346 0.98509 1.18784 0.90455 0.84994 1.10601 1.84836 1.80978 1.30529 1.32016 1.18110 0.92736 0.92264 0.92024 1.21216 0.92538 0.90892 1.36451 1.67137 1.11837 1.27012 0.97241 1.21667 0.89814 0.94472 1.34822 0.92192 1.27825 1.08283 0.92996 0.90993 1.69631 1.42608 1.00572 1.22750 0.84692 0.70879 0.80065 0.80911 1.17329 1.16930 1.17761 1.20118 0.92073 0.96346 1.15771 0.91854 0.86120 0.92010 0.83055 0.84353 0.77660 0.93911 0.87770 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 15 2 O -0.34 -11.66 10.49 -93.24 -0.98 -12.63 15 3 C 0.14 5.42 6.67 22.45 0.15 5.57 15 4 C -0.25 -9.22 9.03 22.48 0.20 -9.01 15 5 C -0.09 -3.62 9.96 22.32 0.22 -3.39 15 6 C 0.00 -0.08 6.73 22.98 0.15 0.07 15 7 O -0.48 -24.63 11.25 -90.26 -1.02 -25.64 15 8 C 0.05 2.66 5.75 -21.22 -0.12 2.54 15 9 C -0.25 -14.53 10.16 85.54 0.87 -13.66 15 10 N -0.32 -18.96 7.66 -190.19 -1.46 -20.42 15 11 C -0.24 -13.22 9.74 85.16 0.83 -12.39 15 12 H 0.06 3.17 7.75 -2.91 -0.02 3.14 15 13 C 0.03 1.26 5.53 85.48 0.47 1.73 15 14 N -0.74 -35.74 13.58 21.97 0.30 -35.45 15 15 Si 1.02 33.32 29.57 68.60 2.03 35.35 15 16 H -0.25 -7.86 7.11 99.48 0.71 -7.15 15 17 H -0.25 -7.12 7.11 99.48 0.71 -6.42 15 18 H -0.25 -8.15 7.11 99.48 0.71 -7.45 15 19 C -0.22 -10.44 9.71 22.74 0.22 -10.22 15 20 H 0.06 1.23 7.65 -2.38 -0.02 1.21 15 21 H 0.12 1.89 8.14 -2.39 -0.02 1.87 15 22 H 0.06 1.23 7.65 -2.39 -0.02 1.21 15 23 H 0.15 4.17 6.26 -2.91 -0.02 4.16 15 24 H 0.14 4.73 8.06 -2.91 -0.02 4.70 15 25 H 0.37 17.50 9.06 -74.05 -0.67 16.83 15 26 H 0.04 2.51 7.95 -2.91 -0.02 2.48 15 27 H 0.31 12.80 8.29 -92.71 -0.77 12.03 15 28 H 0.11 5.12 8.06 -2.91 -0.02 5.09 15 Total: -1.00 -67.81 255.84 3.50 -64.30 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.51 Total: 31.71 kcal Atomic # 6 Polarization: -41.34 SS G_CDS: 4.11 Total: -37.22 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -1.16 Total: -55.86 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -1.99 Total: -38.28 kcal Atomic # 14 Polarization: 33.32 SS G_CDS: 2.03 Total: 35.35 kcal Total: -67.81 3.50 -64.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306704931.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.739 kcal (2) G-P(sol) polarization free energy of solvation -67.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds