Wall clock time and date at job start Mon Mar 30 2020 03:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48496 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46786 * 299.99957 * 3 2 1 6 6 H 1.48502 * 109.47225 * 59.99420 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21513 * 120.00315 * 359.72062 * 11 10 9 13 13 C 1.48147 * 119.99719 * 179.72356 * 11 10 9 14 14 C 1.39140 * 119.68325 * 179.72569 * 13 11 10 15 15 C 1.38792 * 119.22894 * 179.73272 * 14 13 11 16 16 C 1.38290 * 118.58192 * 0.53160 * 15 14 13 17 17 C 1.39458 * 119.29010 * 359.73120 * 16 15 14 18 18 N 1.38982 * 119.63591 * 179.97438 * 17 16 15 19 19 N 1.32077 * 120.72808 * 0.02562 * 17 16 15 20 20 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 21 21 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 22 22 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 23 23 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 24 24 H 1.07997 * 120.37884 * 359.97438 * 14 13 11 25 25 H 1.07997 * 120.70782 * 180.26112 * 15 14 13 26 26 H 1.08000 * 120.35660 * 179.75571 * 16 15 14 27 27 H 0.96996 * 119.99906 * 180.02562 * 18 17 16 28 28 H 0.97008 * 120.00191 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5593 -5.1054 -0.0046 13 6 2.7167 -6.0093 -0.0087 14 6 2.2458 -7.3186 -0.0085 15 6 3.1561 -8.3662 -0.0188 16 6 4.5067 -8.0692 -0.0177 17 6 4.9118 -6.7348 -0.0119 18 7 6.2674 -6.4281 -0.0102 19 7 4.0215 -5.7592 -0.0071 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8898 22 1 0.6241 -2.5567 0.8902 23 1 3.1569 -3.4353 0.0021 24 1 1.1842 -7.5171 -0.0045 25 1 2.8168 -9.3915 -0.0232 26 1 5.2399 -8.8621 -0.0215 27 1 6.5550 -5.5018 -0.0058 28 1 6.9258 -7.1404 -0.0133 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307043992.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:33 Heat of formation + Delta-G solvation = -4.802700 kcal Electronic energy + Delta-G solvation = -14042.298195 eV Core-core repulsion = 11478.914820 eV Total energy + Delta-G solvation = -2563.383375 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.27592 -38.28863 -34.66286 -34.16742 -32.66203 -31.95001 -29.32495 -27.31718 -24.49344 -22.81873 -22.15665 -20.00629 -18.12206 -17.35792 -16.33091 -15.96139 -15.46649 -15.11159 -14.75985 -14.50860 -14.12137 -13.65420 -13.34415 -12.77860 -12.02812 -11.84325 -11.81505 -10.92296 -10.90882 -10.75580 -10.30504 -9.83587 -9.76076 -9.34644 -9.04212 -8.69944 -7.96464 -7.77386 -6.12781 -4.18909 0.94641 1.51004 3.26815 3.33611 3.33812 3.37318 3.40470 4.02092 4.26989 4.38531 4.63106 5.00009 5.16273 5.23503 5.28300 5.53915 5.72003 6.03974 6.30214 6.56614 7.15494 7.30503 7.36309 7.47700 7.54483 7.72422 8.00152 8.17680 8.69176 8.80856 9.11120 9.47151 10.97620 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.041077 B = 0.006231 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.478062 B = 4492.262800 C = 5158.589738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.245 3.755 10 N -0.686 5.686 11 C 0.548 3.452 12 O -0.548 6.548 13 C 0.144 3.856 14 C -0.177 4.177 15 C -0.042 4.042 16 C -0.227 4.227 17 C 0.398 3.602 18 N -0.854 5.854 19 N -0.520 5.520 20 H 0.265 0.735 21 H 0.030 0.970 22 H 0.030 0.970 23 H 0.401 0.599 24 H 0.145 0.855 25 H 0.137 0.863 26 H 0.130 0.870 27 H 0.405 0.595 28 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.616 -14.639 -0.035 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.083 0.917 9 C 0.125 3.875 10 N -0.333 5.333 11 C 0.331 3.669 12 O -0.427 6.427 13 C 0.004 3.996 14 C -0.200 4.200 15 C -0.068 4.068 16 C -0.253 4.253 17 C 0.159 3.841 18 N -0.399 5.399 19 N -0.241 5.241 20 H 0.075 0.925 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.236 0.764 24 H 0.163 0.837 25 H 0.155 0.845 26 H 0.148 0.852 27 H 0.234 0.766 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 10.805 -13.741 -0.027 17.480 hybrid contribution 1.059 0.200 -0.007 1.078 sum 11.864 -13.541 -0.034 18.003 Atomic orbital electron populations 1.69985 1.06084 1.27154 1.49163 1.24949 0.94920 0.99433 0.94742 0.86348 0.79881 0.82918 0.77693 1.19609 1.20819 1.20823 1.21271 0.93416 0.90324 1.52874 0.91724 1.19220 0.88369 0.81942 0.97982 1.46389 1.12067 1.05479 1.69359 1.17942 0.87057 0.83085 0.78850 1.90739 1.15343 1.84655 1.51931 1.21220 0.89011 0.94012 0.95309 1.21858 1.01883 0.91865 1.04438 1.21294 0.92120 0.99492 0.93886 1.21455 0.97210 0.95371 1.11217 1.18286 0.85966 0.88914 0.90908 1.42160 1.02310 1.11451 1.83950 1.67082 1.01959 1.35702 1.19382 0.92529 0.95179 0.95176 0.76412 0.83746 0.84503 0.85164 0.76564 0.76476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.73 15 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 15 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.54 -15.15 9.28 -34.44 -0.32 -15.47 15 8 H 0.06 1.72 7.60 -52.49 -0.40 1.32 15 9 C 0.25 6.76 5.43 -5.19 -0.03 6.73 15 10 N -0.69 -15.96 5.54 -62.33 -0.35 -16.31 15 11 C 0.55 12.21 7.81 -12.19 -0.10 12.11 15 12 O -0.55 -13.74 16.31 5.35 0.09 -13.65 15 13 C 0.14 2.60 6.75 -83.02 -0.56 2.04 15 14 C -0.18 -2.67 9.63 -39.04 -0.38 -3.04 15 15 C -0.04 -0.48 10.16 -39.36 -0.40 -0.88 15 16 C -0.23 -2.46 9.94 -39.11 -0.39 -2.85 15 17 C 0.40 5.15 7.74 -155.19 -1.20 3.95 15 18 N -0.85 -7.74 9.07 31.13 0.28 -7.46 15 19 N -0.52 -8.58 9.57 -9.00 -0.09 -8.67 15 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 21 H 0.03 0.90 8.14 -51.92 -0.42 0.48 15 22 H 0.03 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.40 8.60 7.65 -40.82 -0.31 8.29 15 24 H 0.14 2.15 7.63 -52.49 -0.40 1.75 15 25 H 0.14 1.08 8.06 -52.49 -0.42 0.66 15 26 H 0.13 0.96 8.06 -52.49 -0.42 0.54 15 27 H 0.40 3.59 8.95 -40.82 -0.37 3.22 15 28 H 0.41 2.32 8.82 -40.82 -0.36 1.96 15 LS Contribution 258.18 15.07 3.89 3.89 Total: -1.00 -33.21 258.18 -6.58 -39.80 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -2.66 Total: 7.62 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -3.47 Total: 4.28 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.59 Total: -58.16 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.21 -6.58 -39.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307043992.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.996 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds