Wall clock time and date at job start Mon Mar 30 2020 03:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48496 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46786 * 299.99957 * 3 2 1 6 6 H 1.48502 * 109.47225 * 59.99420 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21513 * 120.00315 * 359.72062 * 11 10 9 13 13 C 1.48147 * 119.99719 * 179.72356 * 11 10 9 14 14 C 1.39140 * 119.68325 * 179.72569 * 13 11 10 15 15 C 1.38792 * 119.22894 * 179.73272 * 14 13 11 16 16 C 1.38290 * 118.58192 * 0.53160 * 15 14 13 17 17 C 1.39458 * 119.29010 * 359.73120 * 16 15 14 18 18 N 1.38982 * 119.63591 * 179.97438 * 17 16 15 19 19 N 1.32077 * 120.72808 * 0.02562 * 17 16 15 20 20 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 21 21 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 22 22 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 23 23 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 24 24 H 1.07997 * 120.37884 * 359.97438 * 14 13 11 25 25 H 1.07997 * 120.70782 * 180.26112 * 15 14 13 26 26 H 1.08000 * 120.35660 * 179.75571 * 16 15 14 27 27 H 0.96996 * 119.99906 * 180.02562 * 18 17 16 28 28 H 0.97008 * 120.00191 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5593 -5.1054 -0.0046 13 6 2.7167 -6.0093 -0.0087 14 6 2.2458 -7.3186 -0.0085 15 6 3.1561 -8.3662 -0.0188 16 6 4.5067 -8.0692 -0.0177 17 6 4.9118 -6.7348 -0.0119 18 7 6.2674 -6.4281 -0.0102 19 7 4.0215 -5.7592 -0.0071 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8898 22 1 0.6241 -2.5567 0.8902 23 1 3.1569 -3.4353 0.0021 24 1 1.1842 -7.5171 -0.0045 25 1 2.8168 -9.3915 -0.0232 26 1 5.2399 -8.8621 -0.0215 27 1 6.5550 -5.5018 -0.0058 28 1 6.9258 -7.1404 -0.0133 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307043992.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:32 Heat of formation + Delta-G solvation = -31.321055 kcal Electronic energy + Delta-G solvation = -14043.448117 eV Core-core repulsion = 11478.914820 eV Total energy + Delta-G solvation = -2564.533297 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.50199 -39.93162 -36.25882 -35.55007 -34.47172 -33.32947 -30.47238 -29.30426 -26.01157 -24.32017 -23.51964 -21.70935 -19.73323 -18.32235 -18.13772 -17.06898 -16.90699 -16.74764 -16.38481 -16.02566 -15.56814 -15.05445 -14.78506 -14.13281 -13.93277 -13.92922 -12.99905 -12.90855 -12.75980 -12.25480 -11.77802 -11.49370 -11.38404 -10.83617 -10.79235 -10.44844 -9.89957 -8.84248 -8.30625 -6.47428 -0.23250 0.51817 1.42038 1.43871 1.57672 1.84294 2.24656 2.42243 2.64288 2.99584 3.04472 3.49197 3.96183 4.14850 4.26181 4.53355 4.60526 5.00027 5.11056 5.19229 5.28824 5.43502 5.59220 5.63704 5.81002 6.36184 6.44288 6.61373 6.82469 7.18041 7.29731 7.37528 8.81980 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.041077 B = 0.006231 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.478062 B = 4492.262800 C = 5158.589738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.988 3.012 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.558 4.558 8 H 0.079 0.921 9 C 0.263 3.737 10 N -0.687 5.687 11 C 0.545 3.455 12 O -0.588 6.588 13 C 0.108 3.892 14 C -0.181 4.181 15 C -0.033 4.033 16 C -0.201 4.201 17 C 0.386 3.614 18 N -0.837 5.837 19 N -0.549 5.549 20 H 0.270 0.730 21 H -0.006 1.006 22 H -0.006 1.006 23 H 0.411 0.589 24 H 0.136 0.864 25 H 0.181 0.819 26 H 0.179 0.821 27 H 0.407 0.593 28 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.775 -16.072 -0.046 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.811 3.189 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.097 0.903 9 C 0.140 3.860 10 N -0.335 5.335 11 C 0.331 3.669 12 O -0.469 6.469 13 C -0.028 4.028 14 C -0.206 4.206 15 C -0.059 4.059 16 C -0.225 4.225 17 C 0.145 3.855 18 N -0.383 5.383 19 N -0.271 5.271 20 H 0.079 0.921 21 H 0.012 0.988 22 H 0.012 0.988 23 H 0.247 0.753 24 H 0.154 0.846 25 H 0.199 0.801 26 H 0.196 0.804 27 H 0.236 0.764 28 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 14.021 -15.213 -0.038 20.689 hybrid contribution 0.161 0.471 -0.003 0.498 sum 14.182 -14.742 -0.042 20.456 Atomic orbital electron populations 1.70135 1.08190 1.28628 1.49766 1.26073 0.95855 1.03856 0.93665 0.85069 0.78924 0.77075 0.77882 1.17916 1.20142 1.20151 1.21597 0.94157 0.90560 1.53248 0.90274 1.18696 0.88628 0.84055 0.94586 1.46142 1.11708 1.05226 1.70382 1.18705 0.87595 0.83718 0.76886 1.90688 1.17473 1.85378 1.53406 1.20482 0.89172 0.92960 1.00220 1.21960 1.02463 0.91737 1.04442 1.21748 0.91705 1.00301 0.92102 1.22012 0.97930 0.95448 1.07149 1.18711 0.86684 0.89433 0.90658 1.42153 1.01200 1.12407 1.82570 1.66866 1.01618 1.37685 1.20963 0.92089 0.98818 0.98815 0.75309 0.84577 0.80123 0.80414 0.76390 0.74256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.29 21.45 0.28 -56.98 15 2 C 0.01 0.30 5.46 84.66 0.46 0.76 15 3 Si 0.99 43.68 29.54 68.60 2.03 45.70 15 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 15 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 6 H -0.28 -11.87 7.11 99.48 0.71 -11.17 15 7 C -0.56 -32.15 9.28 25.60 0.24 -31.91 15 8 H 0.08 4.23 7.60 -2.91 -0.02 4.20 15 9 C 0.26 15.44 5.43 85.63 0.46 15.91 15 10 N -0.69 -33.81 5.54 -469.41 -2.60 -36.41 15 11 C 0.55 25.76 7.81 86.88 0.68 26.44 15 12 O -0.59 -31.63 16.31 -3.76 -0.06 -31.69 15 13 C 0.11 3.99 6.75 41.84 0.28 4.27 15 14 C -0.18 -5.35 9.63 22.62 0.22 -5.13 15 15 C -0.03 -0.63 10.16 22.41 0.23 -0.40 15 16 C -0.20 -3.37 9.94 22.58 0.22 -3.14 15 17 C 0.39 8.85 7.74 133.24 1.03 9.88 15 18 N -0.84 -12.33 9.07 -55.42 -0.50 -12.83 15 19 N -0.55 -17.75 9.57 -182.38 -1.75 -19.50 15 20 H 0.27 15.41 8.31 -92.71 -0.77 14.63 15 21 H -0.01 -0.40 8.14 -2.38 -0.02 -0.41 15 22 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 15 23 H 0.41 18.32 7.65 -92.71 -0.71 17.62 15 24 H 0.14 4.13 7.63 -2.91 -0.02 4.11 15 25 H 0.18 1.84 8.06 -2.91 -0.02 1.81 15 26 H 0.18 1.34 8.06 -2.91 -0.02 1.32 15 27 H 0.41 6.16 8.95 -92.71 -0.83 5.33 15 28 H 0.42 2.97 8.82 -92.70 -0.82 2.15 15 Total: -1.00 -76.96 258.18 0.09 -76.87 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -1.14 Total: 18.16 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 3.83 Total: 16.67 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -4.56 Total: -125.71 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.06 Total: -31.69 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -76.96 0.09 -76.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307043992.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.545 kcal (2) G-P(sol) polarization free energy of solvation -76.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds