Wall clock time and date at job start Mon Mar 30 2020 03:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00182 * 2 1 4 4 H 1.48495 * 109.47528 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47145 * 300.00641 * 3 2 1 6 6 H 1.48502 * 109.46878 * 60.00351 * 3 2 1 7 7 C 1.37879 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00226 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99670 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47339 * 179.97438 * 9 7 2 11 11 C 1.38889 * 120.00297 * 179.97438 * 10 9 7 12 12 C 1.39202 * 120.60602 * 5.61758 * 11 10 9 13 13 N 1.31558 * 120.75748 * 180.28890 * 12 11 10 14 14 C 1.31948 * 122.18647 * 359.72043 * 13 12 11 15 15 C 1.37926 * 121.12654 * 359.97438 * 14 13 12 16 16 C 1.39977 * 119.09531 * 359.97438 * 15 14 13 17 17 C 1.47733 * 120.97886 * 179.97438 * 16 15 14 18 18 N 1.34774 * 119.99719 * 354.29130 * 17 16 15 19 19 O 1.21560 * 120.00082 * 174.28815 * 17 16 15 20 20 H 0.97003 * 119.99796 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47637 * 59.99619 * 9 7 2 22 22 H 1.08999 * 109.47580 * 299.99760 * 9 7 2 23 23 H 0.97003 * 119.99601 * 0.02562 * 10 9 7 24 24 H 1.07993 * 119.62064 * 359.97438 * 12 11 10 25 25 H 1.07998 * 119.43633 * 180.02562 * 14 13 12 26 26 H 1.08004 * 120.44727 * 180.02562 * 15 14 13 27 27 H 0.97005 * 119.99757 * 179.97438 * 18 17 16 28 28 H 0.96999 * 120.00296 * 359.72875 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7400 -4.9222 -0.0015 12 6 0.3795 -5.1929 -0.1173 13 7 -0.0628 -6.4319 -0.1116 14 6 0.7480 -7.4671 -0.0031 15 6 2.1119 -7.2958 0.1102 16 6 2.6374 -5.9984 0.1087 17 6 4.0915 -5.7668 0.2282 18 7 4.9224 -6.8031 0.4562 19 8 4.5386 -4.6415 0.1209 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8902 22 1 0.6247 -2.5571 0.8897 23 1 3.1567 -3.4354 -0.0021 24 1 -0.3214 -4.3763 -0.2077 25 1 0.3368 -8.4658 -0.0038 26 1 2.7655 -8.1511 0.1980 27 1 5.8773 -6.6511 0.5344 28 1 4.5653 -7.7005 0.5457 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307091539.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:07 Heat of formation + Delta-G solvation = -32.138616 kcal Electronic energy + Delta-G solvation = -14379.832688 eV Core-core repulsion = 11815.263939 eV Total energy + Delta-G solvation = -2564.568750 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.62661 -39.77062 -37.27642 -35.03286 -34.77059 -32.81905 -31.06080 -28.43898 -25.90916 -25.01146 -22.92929 -22.01805 -19.34762 -18.90859 -18.16212 -17.38222 -17.04048 -16.48191 -16.29145 -16.05947 -15.18176 -15.08185 -14.94273 -14.56930 -14.21238 -14.09116 -13.12513 -12.84853 -12.65780 -12.18206 -11.66617 -11.56205 -11.44147 -10.83748 -10.71126 -10.45481 -10.33210 -8.42750 -8.34872 -6.48693 -0.16542 0.49540 1.38009 1.38258 1.52553 1.88865 2.31268 2.48935 2.73683 2.98508 3.02137 3.70473 3.86707 3.90850 4.06495 4.46361 4.66320 4.90011 4.97143 5.03198 5.19504 5.46757 5.72352 5.81458 5.86858 6.27813 6.42720 6.62891 6.93371 7.16004 7.23012 7.35519 8.76876 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.034322 B = 0.007653 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.599040 B = 3657.853932 C = 4454.266120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.561 4.561 8 H 0.060 0.940 9 C 0.258 3.742 10 N -0.706 5.706 11 C 0.206 3.794 12 C -0.003 4.003 13 N -0.442 5.442 14 C 0.000 4.000 15 C -0.058 4.058 16 C -0.221 4.221 17 C 0.571 3.429 18 N -0.818 5.818 19 O -0.590 6.590 20 H 0.272 0.728 21 H 0.005 0.995 22 H 0.003 0.997 23 H 0.410 0.590 24 H 0.138 0.862 25 H 0.195 0.805 26 H 0.189 0.811 27 H 0.415 0.585 28 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.030 -16.891 1.032 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.599 4.599 8 H 0.078 0.922 9 C 0.135 3.865 10 N -0.335 5.335 11 C 0.089 3.911 12 C -0.169 4.169 13 N -0.151 5.151 14 C -0.156 4.156 15 C -0.078 4.078 16 C -0.238 4.238 17 C 0.358 3.642 18 N -0.383 5.383 19 O -0.471 6.471 20 H 0.081 0.919 21 H 0.023 0.977 22 H 0.021 0.979 23 H 0.254 0.746 24 H 0.155 0.845 25 H 0.211 0.789 26 H 0.206 0.794 27 H 0.247 0.753 28 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 6.042 -15.985 0.872 17.111 hybrid contribution 1.387 1.107 0.115 1.779 sum 7.429 -14.878 0.988 16.659 Atomic orbital electron populations 1.70056 1.07553 1.28612 1.49663 1.25853 0.95875 1.03143 0.93686 0.85226 0.78578 0.77899 0.78260 1.19238 1.19703 1.19705 1.21506 0.93578 0.91472 1.53373 0.92222 1.18837 0.88791 0.83954 0.94879 1.46008 1.11674 1.02321 1.73494 1.19419 0.94583 0.86112 0.91012 1.22206 0.91672 0.94885 1.08118 1.67259 1.41239 0.99131 1.07429 1.22989 0.90153 0.98380 1.04111 1.22469 0.97354 0.95110 0.92913 1.19819 0.92686 0.94234 1.17019 1.18151 0.86336 0.84653 0.75053 1.43315 1.10863 1.10097 1.74056 1.90579 1.77995 1.24914 1.53635 0.91945 0.97716 0.97930 0.74553 0.84478 0.78865 0.79433 0.75271 0.74701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.82 13.29 21.45 0.28 -54.53 15 2 C 0.01 0.85 5.46 84.66 0.46 1.31 15 3 Si 0.98 44.57 29.54 68.60 2.03 46.60 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 5 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 15 7 C -0.56 -32.95 9.28 25.60 0.24 -32.71 15 8 H 0.06 3.49 7.60 -2.91 -0.02 3.46 15 9 C 0.26 14.33 4.71 85.63 0.40 14.73 15 10 N -0.71 -34.31 5.60 -342.12 -1.92 -36.22 15 11 C 0.21 8.51 6.68 38.82 0.26 8.76 15 12 C 0.00 -0.12 10.49 84.97 0.89 0.77 15 13 N -0.44 -15.15 10.32 -195.43 -2.02 -17.16 15 14 C 0.00 0.01 11.16 84.60 0.94 0.96 15 15 C -0.06 -1.23 9.59 22.62 0.22 -1.01 15 16 C -0.22 -6.98 5.92 -19.78 -0.12 -7.10 15 17 C 0.57 17.25 8.04 86.75 0.70 17.95 15 18 N -0.82 -13.38 8.83 -175.69 -1.55 -14.93 15 19 O -0.59 -23.94 14.64 -3.91 -0.06 -24.00 15 20 H 0.27 14.99 8.31 -92.71 -0.77 14.22 15 21 H 0.01 0.29 7.75 -2.39 -0.02 0.28 15 22 H 0.00 0.17 8.13 -2.39 -0.02 0.15 15 23 H 0.41 20.48 5.01 -92.71 -0.46 20.01 15 24 H 0.14 6.07 6.75 -2.91 -0.02 6.05 15 25 H 0.19 2.92 8.06 -2.91 -0.02 2.89 15 26 H 0.19 1.62 6.58 -2.91 -0.02 1.60 15 27 H 0.41 5.59 8.93 -92.70 -0.83 4.76 15 28 H 0.42 3.31 7.00 -92.71 -0.65 2.66 15 Total: -1.00 -74.27 248.99 0.05 -74.22 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -0.71 Total: 22.37 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 4.00 Total: 3.67 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -5.20 Total: -122.85 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.06 Total: -24.00 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -74.27 0.05 -74.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307091539.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.080 kcal (2) G-P(sol) polarization free energy of solvation -74.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds