Wall clock time and date at job start Mon Mar 30 2020 03:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99830 * 2 1 4 4 H 1.48504 * 109.47346 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47169 * 299.99725 * 3 2 1 6 6 H 1.48498 * 109.47155 * 59.99795 * 3 2 1 7 7 C 1.37876 * 120.00459 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00197 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99928 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47303 * 179.97438 * 9 7 2 11 11 C 1.46849 * 111.00105 * 189.99921 * 10 9 7 12 12 C 1.53033 * 109.52515 * 174.15732 * 11 10 9 13 13 H 1.08997 * 109.50362 * 299.19987 * 12 11 10 14 14 O 1.42905 * 109.50241 * 179.11769 * 12 11 10 15 15 C 1.53124 * 109.27795 * 59.18015 * 12 11 10 16 16 C 1.53120 * 109.15780 * 302.34684 * 15 12 11 17 17 F 1.39903 * 109.50133 * 297.71204 * 16 15 12 18 18 F 1.39897 * 109.53503 * 177.61554 * 16 15 12 19 19 C 1.46844 * 111.00266 * 65.78759 * 10 9 7 20 20 H 0.96998 * 120.00012 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47275 * 59.98947 * 9 7 2 22 22 H 1.09007 * 109.46743 * 299.99781 * 9 7 2 23 23 H 1.09006 * 109.46291 * 54.14063 * 11 10 9 24 24 H 1.09004 * 109.46336 * 294.17888 * 11 10 9 25 25 H 0.96705 * 113.99788 * 180.02562 * 14 12 11 26 26 H 1.08997 * 109.52017 * 62.24935 * 15 12 11 27 27 H 1.08994 * 109.52218 * 182.43686 * 15 12 11 28 28 H 1.08999 * 109.46287 * 305.85792 * 19 10 9 29 29 H 1.09001 * 109.46143 * 65.83524 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5216 -4.8930 -0.2375 12 6 2.5580 -6.0104 -0.3757 13 1 3.2105 -5.7987 -1.2228 14 8 1.8910 -7.2565 -0.5869 15 6 3.3920 -6.0878 0.9062 16 6 4.0549 -4.7306 1.1571 17 9 4.9232 -4.4327 0.1013 18 9 4.7752 -4.7762 2.3555 19 6 2.9751 -3.6503 1.2508 20 1 -0.4850 0.8400 0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 0.9355 -4.8259 -1.1542 24 1 0.8603 -5.1126 0.6008 25 1 2.4882 -8.0109 -0.6830 26 1 2.7451 -6.3382 1.7469 27 1 4.1598 -6.8534 0.7956 28 1 3.4447 -2.6805 1.4152 29 1 2.3071 -3.8759 2.0821 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307095902.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:38 Heat of formation + Delta-G solvation = -151.759795 kcal Electronic energy + Delta-G solvation = -15848.479423 eV Core-core repulsion = 12828.034324 eV Total energy + Delta-G solvation = -3020.445099 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.60878 -46.59831 -38.55790 -36.09310 -33.00085 -31.45368 -29.25345 -27.25599 -24.29135 -22.52334 -21.48142 -19.80825 -17.54365 -16.77351 -16.41756 -16.38003 -16.01213 -15.16450 -14.52703 -13.99632 -13.68569 -13.48639 -13.19269 -12.94350 -12.70105 -12.68112 -12.08598 -11.97353 -11.42000 -11.28854 -10.89909 -10.72972 -10.58191 -10.25829 -9.94679 -9.93776 -9.30113 -8.52150 -7.53949 -6.10524 -4.12984 3.28480 3.36214 3.41500 3.74266 4.20033 4.32016 4.42356 4.51726 4.71346 4.94635 5.18875 5.26048 5.41044 5.44485 5.70909 5.80301 5.91396 6.20330 6.22207 6.30050 7.06376 7.13575 7.58672 7.66012 7.84219 7.99551 8.35926 8.94306 9.52197 11.00237 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.035427 B = 0.008787 C = 0.007558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.167669 B = 3185.701450 C = 3703.676347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.197 3.803 10 N -0.526 5.526 11 C 0.056 3.944 12 C 0.112 3.888 13 H 0.074 0.926 14 O -0.562 6.562 15 C -0.191 4.191 16 C 0.293 3.707 17 F -0.190 7.190 18 F -0.205 7.205 19 C 0.025 3.975 20 H 0.262 0.738 21 H 0.039 0.961 22 H -0.003 1.003 23 H 0.086 0.914 24 H 0.036 0.964 25 H 0.377 0.623 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.589 -11.567 1.628 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.073 3.927 10 N -0.252 5.252 11 C -0.073 4.073 12 C 0.052 3.948 13 H 0.092 0.908 14 O -0.366 6.366 15 C -0.230 4.230 16 C 0.256 3.744 17 F -0.171 7.171 18 F -0.186 7.186 19 C -0.104 4.104 20 H 0.072 0.928 21 H 0.057 0.943 22 H 0.015 0.985 23 H 0.105 0.895 24 H 0.054 0.946 25 H 0.223 0.777 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.129 0.871 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.255 -10.977 1.281 12.237 hybrid contribution 0.525 0.428 0.721 0.989 sum 5.781 -10.548 2.001 12.194 Atomic orbital electron populations 1.69958 1.06098 1.26928 1.50589 1.24978 0.94877 0.99424 0.95133 0.86414 0.80153 0.83161 0.77580 1.19525 1.20892 1.21039 1.21180 0.93659 0.89716 1.50719 0.91572 1.19773 0.89597 0.86427 0.96869 1.61879 1.28623 1.02932 1.31778 1.21980 0.94462 0.88635 1.02181 1.21715 0.93763 0.84535 0.94776 0.90764 1.86510 1.37739 1.17167 1.95220 1.23308 1.01331 0.95951 1.02378 1.21033 0.84478 0.97068 0.71782 1.93002 1.72069 1.94666 1.57392 1.92971 1.80555 1.97520 1.47581 1.22881 0.94879 0.99086 0.93554 0.92804 0.94286 0.98487 0.89541 0.94553 0.77657 0.88554 0.89784 0.87096 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.29 55.43 0.74 -25.38 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 15 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 7 C -0.51 -14.13 8.43 -34.44 -0.29 -14.42 15 8 H 0.07 1.82 7.12 -52.49 -0.37 1.44 15 9 C 0.20 4.98 4.72 -4.98 -0.02 4.96 15 10 N -0.53 -11.06 4.58 -236.11 -1.08 -12.15 15 11 C 0.06 1.00 5.11 -3.83 -0.02 0.98 15 12 C 0.11 1.63 3.50 -26.65 -0.09 1.54 15 13 H 0.07 1.11 7.91 -51.93 -0.41 0.70 15 14 O -0.56 -7.20 13.32 -35.23 -0.47 -7.67 15 15 C -0.19 -2.58 5.15 -26.61 -0.14 -2.72 15 16 C 0.29 4.90 2.14 -26.65 -0.06 4.84 15 17 F -0.19 -3.49 16.60 2.25 0.04 -3.46 15 18 F -0.21 -3.40 17.07 2.25 0.04 -3.36 15 19 C 0.03 0.49 4.79 -3.84 -0.02 0.47 15 20 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 21 H 0.04 1.05 7.99 -51.93 -0.41 0.63 15 22 H 0.00 -0.07 8.12 -51.92 -0.42 -0.49 15 23 H 0.09 1.57 8.02 -51.93 -0.42 1.15 15 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 15 25 H 0.38 2.95 9.08 45.56 0.41 3.36 15 26 H 0.10 1.23 8.14 -51.93 -0.42 0.81 15 27 H 0.08 0.94 8.14 -51.93 -0.42 0.51 15 28 H 0.11 2.33 6.70 -51.93 -0.35 1.98 15 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 LS Contribution 250.84 15.07 3.78 3.78 Total: -1.00 -29.96 250.84 -5.51 -35.48 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -2.80 Total: -0.75 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.74 Total: -2.85 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.35 Total: -37.52 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.47 Total: -7.67 kcal Atomic # 9 Polarization: -6.90 SS G_CDS: 0.08 Total: -6.82 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.96 -5.51 -35.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307095902.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.284 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds