Wall clock time and date at job start Mon Mar 30 2020 03:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99830 * 2 1 4 4 H 1.48504 * 109.47346 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47169 * 299.99725 * 3 2 1 6 6 H 1.48498 * 109.47155 * 59.99795 * 3 2 1 7 7 C 1.37876 * 120.00459 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00197 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99928 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47303 * 179.97438 * 9 7 2 11 11 C 1.46849 * 111.00105 * 189.99921 * 10 9 7 12 12 C 1.53033 * 109.52515 * 174.15732 * 11 10 9 13 13 H 1.08997 * 109.50362 * 299.19987 * 12 11 10 14 14 O 1.42905 * 109.50241 * 179.11769 * 12 11 10 15 15 C 1.53124 * 109.27795 * 59.18015 * 12 11 10 16 16 C 1.53120 * 109.15780 * 302.34684 * 15 12 11 17 17 F 1.39903 * 109.50133 * 297.71204 * 16 15 12 18 18 F 1.39897 * 109.53503 * 177.61554 * 16 15 12 19 19 C 1.46844 * 111.00266 * 65.78759 * 10 9 7 20 20 H 0.96998 * 120.00012 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47275 * 59.98947 * 9 7 2 22 22 H 1.09007 * 109.46743 * 299.99781 * 9 7 2 23 23 H 1.09006 * 109.46291 * 54.14063 * 11 10 9 24 24 H 1.09004 * 109.46336 * 294.17888 * 11 10 9 25 25 H 0.96705 * 113.99788 * 180.02562 * 14 12 11 26 26 H 1.08997 * 109.52017 * 62.24935 * 15 12 11 27 27 H 1.08994 * 109.52218 * 182.43686 * 15 12 11 28 28 H 1.08999 * 109.46287 * 305.85792 * 19 10 9 29 29 H 1.09001 * 109.46143 * 65.83524 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5216 -4.8930 -0.2375 12 6 2.5580 -6.0104 -0.3757 13 1 3.2105 -5.7987 -1.2228 14 8 1.8910 -7.2565 -0.5869 15 6 3.3920 -6.0878 0.9062 16 6 4.0549 -4.7306 1.1571 17 9 4.9232 -4.4327 0.1013 18 9 4.7752 -4.7762 2.3555 19 6 2.9751 -3.6503 1.2508 20 1 -0.4850 0.8400 0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 0.9355 -4.8259 -1.1542 24 1 0.8603 -5.1126 0.6008 25 1 2.4882 -8.0109 -0.6830 26 1 2.7451 -6.3382 1.7469 27 1 4.1598 -6.8534 0.7956 28 1 3.4447 -2.6805 1.4152 29 1 2.3071 -3.8759 2.0821 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307095902.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:38 Heat of formation + Delta-G solvation = -174.764369 kcal Electronic energy + Delta-G solvation = -15849.476976 eV Core-core repulsion = 12828.034324 eV Total energy + Delta-G solvation = -3021.442653 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.96861 -47.96823 -39.92510 -37.43968 -34.94223 -32.95520 -30.67011 -29.12850 -26.00239 -23.89299 -23.25176 -21.18834 -18.77370 -18.57627 -17.96857 -17.70455 -17.40411 -16.78530 -16.25670 -15.49993 -15.11815 -14.93136 -14.65468 -14.35409 -14.29582 -13.89277 -13.80767 -13.42480 -13.18705 -12.78445 -12.74611 -12.61275 -12.12952 -11.81995 -11.62027 -11.28661 -11.03842 -10.65663 -9.26787 -8.24574 -6.34910 1.40557 1.41826 1.55109 2.34240 2.47783 2.89975 2.97793 3.09481 3.27776 3.47256 3.63858 3.97688 4.08460 4.26632 4.39809 4.52025 4.57241 4.70951 4.79533 4.95714 5.09047 5.15552 5.58626 5.94569 6.03973 6.41968 6.78740 6.84481 7.35085 8.86702 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.035427 B = 0.008787 C = 0.007558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.167669 B = 3185.701450 C = 3703.676347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.212 3.788 10 N -0.533 5.533 11 C 0.051 3.949 12 C 0.126 3.874 13 H 0.073 0.927 14 O -0.567 6.567 15 C -0.180 4.180 16 C 0.297 3.703 17 F -0.200 7.200 18 F -0.202 7.202 19 C 0.022 3.978 20 H 0.266 0.734 21 H 0.015 0.985 22 H -0.025 1.025 23 H 0.076 0.924 24 H 0.036 0.964 25 H 0.402 0.598 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.086 0.914 29 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.781 -12.611 1.832 14.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.080 0.920 9 C 0.086 3.914 10 N -0.259 5.259 11 C -0.077 4.077 12 C 0.066 3.934 13 H 0.091 0.909 14 O -0.375 6.375 15 C -0.218 4.218 16 C 0.260 3.740 17 F -0.181 7.181 18 F -0.183 7.183 19 C -0.108 4.108 20 H 0.075 0.925 21 H 0.034 0.966 22 H -0.008 1.008 23 H 0.095 0.905 24 H 0.055 0.945 25 H 0.253 0.747 26 H 0.127 0.873 27 H 0.138 0.862 28 H 0.104 0.896 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.471 -12.063 1.485 13.770 hybrid contribution 0.126 0.696 0.663 0.969 sum 6.597 -11.368 2.148 13.318 Atomic orbital electron populations 1.70067 1.07617 1.28046 1.51363 1.25849 0.95718 1.03050 0.94563 0.85352 0.78897 0.78649 0.77850 1.18983 1.20265 1.20257 1.21456 0.93604 0.91004 1.50679 0.92011 1.19401 0.89658 0.87753 0.94583 1.61709 1.27883 1.03341 1.32949 1.22039 0.95555 0.88491 1.01662 1.21341 0.92296 0.84324 0.95420 0.90943 1.86465 1.38597 1.17274 1.95161 1.23277 1.01982 0.94471 1.02071 1.21004 0.83530 0.97856 0.71601 1.92985 1.72355 1.94901 1.57894 1.92978 1.80407 1.97527 1.47434 1.22860 0.95617 0.99307 0.92971 0.92488 0.96645 1.00777 0.90506 0.94544 0.74685 0.87323 0.86189 0.89578 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.14 13.29 21.45 0.28 -54.86 15 2 C 0.01 0.39 5.46 84.66 0.46 0.85 15 3 Si 0.97 44.04 29.54 68.60 2.03 46.07 15 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 7 C -0.53 -29.71 8.43 25.60 0.22 -29.50 15 8 H 0.06 3.45 7.12 -2.91 -0.02 3.43 15 9 C 0.21 11.06 4.72 85.56 0.40 11.46 15 10 N -0.53 -22.68 4.58 -900.93 -4.13 -26.81 15 11 C 0.05 1.79 5.11 86.32 0.44 2.23 15 12 C 0.13 3.37 3.50 30.65 0.11 3.47 15 13 H 0.07 2.00 7.91 -2.39 -0.02 1.98 15 14 O -0.57 -12.65 13.32 -148.98 -1.98 -14.64 15 15 C -0.18 -4.25 5.15 30.68 0.16 -4.09 15 16 C 0.30 9.37 2.14 30.65 0.07 9.43 15 17 F -0.20 -7.03 16.60 44.97 0.75 -6.28 15 18 F -0.20 -6.28 17.07 44.97 0.77 -5.52 15 19 C 0.02 0.84 4.79 86.33 0.41 1.25 15 20 H 0.27 14.77 8.31 -92.71 -0.77 14.00 15 21 H 0.02 0.87 7.99 -2.39 -0.02 0.85 15 22 H -0.03 -1.42 8.12 -2.38 -0.02 -1.44 15 23 H 0.08 2.82 8.02 -2.38 -0.02 2.80 15 24 H 0.04 1.28 8.14 -2.39 -0.02 1.26 15 25 H 0.40 4.56 9.08 -74.05 -0.67 3.89 15 26 H 0.11 2.37 8.14 -2.39 -0.02 2.35 15 27 H 0.12 2.07 8.14 -2.39 -0.02 2.05 15 28 H 0.09 3.69 6.70 -2.39 -0.02 3.68 15 29 H 0.06 2.21 8.14 -2.39 -0.02 2.20 15 Total: -1.00 -64.49 250.84 0.46 -64.02 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: 0.49 Total: 2.90 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 2.27 Total: -4.89 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -3.85 Total: -81.66 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -1.98 Total: -14.64 kcal Atomic # 9 Polarization: -13.31 SS G_CDS: 1.51 Total: -11.80 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -64.49 0.46 -64.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307095902.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.743 kcal (2) G-P(sol) polarization free energy of solvation -64.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds