Wall clock time and date at job start Mon Mar 30 2020 03:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 N 1.46903 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46845 * 111.00198 * 169.99996 * 10 9 7 12 12 C 1.53029 * 109.52561 * 185.84013 * 11 10 9 13 13 H 1.08999 * 109.50443 * 60.79921 * 12 11 10 14 14 O 1.42902 * 109.50404 * 180.87897 * 12 11 10 15 15 C 1.53124 * 109.27753 * 300.81873 * 12 11 10 16 16 C 1.53118 * 109.15869 * 57.65585 * 15 12 11 17 17 F 1.39896 * 109.50341 * 62.28729 * 16 15 12 18 18 F 1.39901 * 109.50141 * 182.36436 * 16 15 12 19 19 C 1.46850 * 111.00039 * 294.20725 * 10 9 7 20 20 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 21 21 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 22 22 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 23 23 H 1.09005 * 109.46193 * 305.85469 * 11 10 9 24 24 H 1.09005 * 109.46343 * 65.81778 * 11 10 9 25 25 H 0.96708 * 113.99829 * 180.02562 * 14 12 11 26 26 H 1.09005 * 109.52208 * 177.55753 * 15 12 11 27 27 H 1.08997 * 109.52554 * 297.74704 * 15 12 11 28 28 H 1.08991 * 109.46478 * 294.18106 * 19 10 9 29 29 H 1.09001 * 109.45650 * 54.14692 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 7 4.0011 -2.5792 -0.0169 11 6 5.4484 -2.6249 -0.2611 12 6 5.8972 -4.0809 -0.4040 13 1 5.3842 -4.5385 -1.2498 14 8 7.3089 -4.1258 -0.6213 15 6 5.5527 -4.8442 0.8779 16 6 4.0469 -4.7404 1.1353 17 9 3.3504 -5.3413 0.0814 18 9 3.7321 -5.3899 2.3337 19 6 3.6518 -3.2652 1.2336 20 1 -0.4849 0.8401 0.0041 21 1 3.8711 -0.6782 -0.9024 22 1 3.8785 -0.6825 0.8776 23 1 5.6794 -2.0820 -1.1777 24 1 5.9727 -2.1636 0.5759 25 1 7.6632 -5.0201 -0.7214 26 1 5.8314 -5.8919 0.7640 27 1 6.0966 -4.4109 1.7172 28 1 4.1844 -2.8010 2.0635 29 1 2.5778 -3.1874 1.4026 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307095904.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:43 Heat of formation + Delta-G solvation = -146.778392 kcal Electronic energy + Delta-G solvation = -15879.461391 eV Core-core repulsion = 12859.232302 eV Total energy + Delta-G solvation = -3020.229090 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.62281 -46.61123 -38.66589 -36.20985 -32.95279 -31.61346 -29.33786 -27.85028 -24.25449 -22.61364 -21.18528 -19.87449 -17.61149 -16.94676 -16.68896 -16.44306 -16.08557 -15.22940 -14.50604 -13.84651 -13.83236 -13.62360 -13.29120 -12.95461 -12.81165 -12.74679 -12.28349 -12.15620 -11.72108 -11.38064 -10.99646 -10.66048 -10.57884 -10.20736 -10.03511 -9.94912 -9.39071 -8.64401 -7.68828 -6.12023 -4.11455 3.24121 3.31793 3.32589 3.67149 4.14510 4.26443 4.35429 4.45804 4.65880 4.84833 5.12613 5.19865 5.34546 5.36983 5.63130 5.71160 5.82991 6.05277 6.12588 6.25907 6.65456 6.76291 7.39708 7.50946 7.60558 7.78468 8.52681 8.95711 9.47713 11.00668 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.034481 B = 0.009244 C = 0.007873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.848043 B = 3028.302799 C = 3555.504491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.083 0.917 9 C 0.167 3.833 10 N -0.517 5.517 11 C 0.053 3.947 12 C 0.112 3.888 13 H 0.076 0.924 14 O -0.562 6.562 15 C -0.192 4.192 16 C 0.295 3.705 17 F -0.189 7.189 18 F -0.204 7.204 19 C 0.024 3.976 20 H 0.265 0.735 21 H 0.033 0.967 22 H -0.005 1.005 23 H 0.087 0.913 24 H 0.037 0.963 25 H 0.378 0.622 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.212 -8.020 1.639 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.101 0.899 9 C 0.042 3.958 10 N -0.243 5.243 11 C -0.075 4.075 12 C 0.053 3.947 13 H 0.094 0.906 14 O -0.367 6.367 15 C -0.230 4.230 16 C 0.258 3.742 17 F -0.170 7.170 18 F -0.185 7.185 19 C -0.105 4.105 20 H 0.075 0.925 21 H 0.051 0.949 22 H 0.012 0.988 23 H 0.105 0.895 24 H 0.055 0.945 25 H 0.225 0.775 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.727 -7.509 1.294 13.985 hybrid contribution 0.697 0.537 0.697 1.122 sum 12.424 -6.972 1.991 14.385 Atomic orbital electron populations 1.69891 1.06136 1.27013 1.50316 1.24883 0.94751 0.98851 0.94595 0.86872 0.80266 0.83967 0.78731 1.19975 1.21064 1.19245 1.21001 0.88385 0.95000 1.51263 0.89890 1.20200 0.97374 0.82375 0.95835 1.61657 1.10145 1.20118 1.32379 1.22021 0.89467 0.93899 1.02135 1.21679 0.81291 0.96818 0.94954 0.90590 1.86494 1.21809 1.33292 1.95100 1.23321 0.94158 1.03325 1.02247 1.20967 0.90644 0.90637 0.71952 1.93013 1.81263 1.85253 1.57423 1.92979 1.94365 1.83620 1.47514 1.22914 1.05518 0.89133 0.92945 0.92488 0.94895 0.98764 0.89497 0.94478 0.77505 0.89640 0.88544 0.92759 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.96 55.43 0.77 -26.21 15 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 15 3 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 15 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 15 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 6 H -0.27 -6.14 6.54 56.52 0.37 -5.77 15 7 C -0.52 -14.38 8.98 -34.44 -0.31 -14.69 15 8 H 0.08 2.52 7.37 -52.49 -0.39 2.14 15 9 C 0.17 3.92 3.79 -4.98 -0.02 3.90 15 10 N -0.52 -10.51 4.58 -236.12 -1.08 -11.59 15 11 C 0.05 0.90 5.11 -3.84 -0.02 0.88 15 12 C 0.11 1.56 3.50 -26.65 -0.09 1.47 15 13 H 0.08 1.10 7.91 -51.93 -0.41 0.69 15 14 O -0.56 -6.82 13.32 -35.23 -0.47 -7.29 15 15 C -0.19 -2.51 5.15 -26.61 -0.14 -2.64 15 16 C 0.29 4.88 2.14 -26.65 -0.06 4.82 15 17 F -0.19 -3.48 16.60 2.25 0.04 -3.45 15 18 F -0.20 -3.37 17.07 2.25 0.04 -3.33 15 19 C 0.02 0.46 4.79 -3.83 -0.02 0.44 15 20 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 21 H 0.03 0.77 7.42 -51.93 -0.39 0.38 15 22 H -0.01 -0.12 7.18 -51.93 -0.37 -0.50 15 23 H 0.09 1.45 8.02 -51.93 -0.42 1.04 15 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 25 H 0.38 2.74 9.09 45.56 0.41 3.16 15 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 27 H 0.10 1.18 8.14 -51.93 -0.42 0.76 15 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 29 H 0.12 2.50 6.70 -51.93 -0.35 2.15 15 LS Contribution 247.24 15.07 3.73 3.73 Total: -1.00 -30.68 247.24 -5.16 -35.84 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -2.76 Total: -0.06 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -0.75 Total: -3.90 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.31 Total: -37.80 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.47 Total: -7.29 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.08 Total: -6.78 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.68 -5.16 -35.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307095904.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.940 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds