Wall clock time and date at job start Mon Mar 30 2020 03:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 N 1.46903 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46845 * 111.00198 * 169.99996 * 10 9 7 12 12 C 1.53029 * 109.52561 * 185.84013 * 11 10 9 13 13 H 1.08999 * 109.50443 * 60.79921 * 12 11 10 14 14 O 1.42902 * 109.50404 * 180.87897 * 12 11 10 15 15 C 1.53124 * 109.27753 * 300.81873 * 12 11 10 16 16 C 1.53118 * 109.15869 * 57.65585 * 15 12 11 17 17 F 1.39896 * 109.50341 * 62.28729 * 16 15 12 18 18 F 1.39901 * 109.50141 * 182.36436 * 16 15 12 19 19 C 1.46850 * 111.00039 * 294.20725 * 10 9 7 20 20 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 21 21 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 22 22 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 23 23 H 1.09005 * 109.46193 * 305.85469 * 11 10 9 24 24 H 1.09005 * 109.46343 * 65.81778 * 11 10 9 25 25 H 0.96708 * 113.99829 * 180.02562 * 14 12 11 26 26 H 1.09005 * 109.52208 * 177.55753 * 15 12 11 27 27 H 1.08997 * 109.52554 * 297.74704 * 15 12 11 28 28 H 1.08991 * 109.46478 * 294.18106 * 19 10 9 29 29 H 1.09001 * 109.45650 * 54.14692 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 7 4.0011 -2.5792 -0.0169 11 6 5.4484 -2.6249 -0.2611 12 6 5.8972 -4.0809 -0.4040 13 1 5.3842 -4.5385 -1.2498 14 8 7.3089 -4.1258 -0.6213 15 6 5.5527 -4.8442 0.8779 16 6 4.0469 -4.7404 1.1353 17 9 3.3504 -5.3413 0.0814 18 9 3.7321 -5.3899 2.3337 19 6 3.6518 -3.2652 1.2336 20 1 -0.4849 0.8401 0.0041 21 1 3.8711 -0.6782 -0.9024 22 1 3.8785 -0.6825 0.8776 23 1 5.6794 -2.0820 -1.1777 24 1 5.9727 -2.1636 0.5759 25 1 7.6632 -5.0201 -0.7214 26 1 5.8314 -5.8919 0.7640 27 1 6.0966 -4.4109 1.7172 28 1 4.1844 -2.8010 2.0635 29 1 2.5778 -3.1874 1.4026 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307095904.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:43 Heat of formation + Delta-G solvation = -171.424694 kcal Electronic energy + Delta-G solvation = -15880.530135 eV Core-core repulsion = 12859.232302 eV Total energy + Delta-G solvation = -3021.297833 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.98089 -47.98732 -39.95780 -37.46283 -34.87757 -33.11808 -30.68336 -29.64233 -25.84509 -23.92366 -22.93213 -21.20170 -19.02754 -18.74831 -18.00465 -17.71307 -17.42979 -16.71072 -16.25624 -15.38256 -15.22682 -14.98927 -14.70462 -14.53494 -14.33011 -14.01352 -13.90195 -13.48226 -13.28021 -12.79667 -12.76259 -12.43240 -11.96370 -11.77360 -11.64676 -11.44131 -11.03610 -10.80191 -9.27189 -8.29914 -6.35396 1.36683 1.37617 1.47924 2.33467 2.40023 2.86782 2.96974 3.04081 3.27151 3.45632 3.62158 3.98533 4.07324 4.26676 4.37246 4.48314 4.55319 4.68238 4.79470 4.80259 4.97478 5.01283 5.45738 5.81070 6.08090 6.49650 6.70992 6.83264 7.28197 8.86644 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.034481 B = 0.009244 C = 0.007873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.848043 B = 3028.302799 C = 3555.504491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.525 4.525 8 H 0.036 0.964 9 C 0.176 3.824 10 N -0.534 5.534 11 C 0.049 3.951 12 C 0.124 3.876 13 H 0.070 0.930 14 O -0.565 6.565 15 C -0.179 4.179 16 C 0.294 3.706 17 F -0.203 7.203 18 F -0.204 7.204 19 C 0.022 3.978 20 H 0.268 0.732 21 H 0.041 0.959 22 H 0.000 1.000 23 H 0.087 0.913 24 H 0.047 0.953 25 H 0.402 0.598 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.150 -7.890 1.778 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.563 4.563 8 H 0.054 0.946 9 C 0.050 3.950 10 N -0.260 5.260 11 C -0.079 4.079 12 C 0.064 3.936 13 H 0.087 0.913 14 O -0.373 6.373 15 C -0.217 4.217 16 C 0.257 3.743 17 F -0.185 7.185 18 F -0.185 7.185 19 C -0.107 4.107 20 H 0.077 0.923 21 H 0.059 0.941 22 H 0.018 0.982 23 H 0.105 0.895 24 H 0.065 0.935 25 H 0.253 0.747 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.088 0.912 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.702 -7.425 1.432 16.532 hybrid contribution -0.255 0.393 0.656 0.806 sum 14.446 -7.032 2.088 16.202 Atomic orbital electron populations 1.70057 1.08274 1.28280 1.52047 1.25864 0.95603 1.03250 0.94065 0.85687 0.79409 0.78301 0.79386 1.18880 1.20819 1.17026 1.21231 0.90981 0.93367 1.50744 0.94558 1.19960 0.94290 0.84620 0.96171 1.61472 1.12963 1.18304 1.33254 1.22097 0.86957 0.96425 1.02429 1.21338 0.82413 0.94633 0.95184 0.91255 1.86449 1.20172 1.35659 1.95005 1.23287 0.90668 1.05441 1.02322 1.21091 0.92907 0.88724 0.71559 1.92985 1.82005 1.85315 1.58150 1.92978 1.94618 1.83385 1.47529 1.22845 1.03391 0.91377 0.93087 0.92304 0.94135 0.98198 0.89502 0.93527 0.74696 0.86457 0.86942 0.91197 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.91 13.96 21.45 0.30 -58.61 15 2 C 0.01 0.57 5.47 84.66 0.46 1.04 15 3 Si 0.95 42.91 27.47 68.60 1.88 44.80 15 4 H -0.26 -11.45 7.11 99.48 0.71 -10.75 15 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 6 H -0.25 -10.24 6.54 99.48 0.65 -9.59 15 7 C -0.53 -30.05 8.98 25.60 0.23 -29.82 15 8 H 0.04 2.35 7.37 -2.91 -0.02 2.33 15 9 C 0.18 8.15 3.79 85.55 0.32 8.47 15 10 N -0.53 -21.43 4.58 -900.95 -4.13 -25.57 15 11 C 0.05 1.53 5.11 86.32 0.44 1.97 15 12 C 0.12 3.07 3.50 30.65 0.11 3.18 15 13 H 0.07 1.83 7.91 -2.39 -0.02 1.81 15 14 O -0.56 -11.32 13.32 -148.98 -1.98 -13.31 15 15 C -0.18 -4.05 5.15 30.67 0.16 -3.89 15 16 C 0.29 9.35 2.14 30.64 0.07 9.42 15 17 F -0.20 -7.46 16.60 44.97 0.75 -6.71 15 18 F -0.20 -6.50 17.07 44.97 0.77 -5.74 15 19 C 0.02 0.84 4.79 86.32 0.41 1.26 15 20 H 0.27 15.51 8.31 -92.71 -0.77 14.74 15 21 H 0.04 1.82 7.42 -2.39 -0.02 1.80 15 22 H 0.00 0.02 7.18 -2.39 -0.02 0.00 15 23 H 0.09 2.70 8.02 -2.38 -0.02 2.68 15 24 H 0.05 1.38 8.14 -2.38 -0.02 1.36 15 25 H 0.40 3.93 9.09 -74.05 -0.67 3.26 15 26 H 0.12 1.97 8.14 -2.38 -0.02 1.95 15 27 H 0.11 2.25 8.14 -2.39 -0.02 2.23 15 28 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 29 H 0.08 3.48 6.70 -2.39 -0.02 3.47 15 Total: -1.00 -67.95 247.24 0.22 -67.73 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 0.43 Total: 5.78 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 2.20 Total: -8.37 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -3.83 Total: -84.18 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -1.98 Total: -13.31 kcal Atomic # 9 Polarization: -13.96 SS G_CDS: 1.51 Total: -12.45 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.80 kcal Total: -67.95 0.22 -67.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307095904.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.695 kcal (2) G-P(sol) polarization free energy of solvation -67.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds