Wall clock time and date at job start Mon Mar 30 2020 03:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00096 * 2 1 4 4 H 1.48502 * 109.46825 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47039 * 299.99524 * 3 2 1 6 6 H 1.48498 * 109.47415 * 59.99848 * 3 2 1 7 7 C 1.37876 * 119.99475 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00507 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47474 * 180.02562 * 9 7 2 11 11 C 1.39021 * 120.00481 * 179.97438 * 10 9 7 12 12 C 1.39129 * 119.64169 * 359.97438 * 11 10 9 13 13 C 1.39500 * 118.92728 * 180.27935 * 12 11 10 14 14 C 1.48164 * 120.87794 * 179.70170 * 13 12 11 15 15 N 1.34776 * 119.99999 * 180.02562 * 14 13 12 16 16 O 1.21510 * 120.00293 * 359.97438 * 14 13 12 17 17 C 1.40016 * 118.23869 * 359.45932 * 13 12 11 18 18 C 1.37943 * 119.17449 * 0.52004 * 17 13 12 19 19 N 1.31916 * 121.00272 * 359.74522 * 18 17 13 20 20 H 0.97006 * 119.99482 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47458 * 59.99364 * 9 7 2 22 22 H 1.09003 * 109.46860 * 299.99887 * 9 7 2 23 23 H 0.97001 * 119.99847 * 359.97438 * 10 9 7 24 24 H 1.08002 * 120.53189 * 359.97438 * 12 11 10 25 25 H 0.96998 * 120.00042 * 359.97438 * 15 14 13 26 26 H 0.97000 * 120.00164 * 180.02562 * 15 14 13 27 27 H 1.08000 * 120.41373 * 180.28551 * 17 13 12 28 28 H 1.07998 * 119.50076 * 179.76638 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0018 11 6 1.7394 -4.9234 0.0025 12 6 0.3700 -5.1691 0.0027 13 6 -0.0785 -6.4900 0.0094 14 6 -1.5271 -6.8011 0.0164 15 7 -1.9409 -8.0838 0.0234 16 8 -2.3421 -5.8999 0.0168 17 6 0.8764 -7.5140 0.0041 18 6 2.2159 -7.1842 0.0035 19 7 2.6054 -5.9239 0.0027 20 1 -0.4850 0.8401 -0.0004 21 1 0.6245 -2.5571 -0.8896 22 1 0.6239 -2.5567 0.8903 23 1 3.1565 -3.4355 0.0021 24 1 -0.3343 -4.3504 0.0026 25 1 -1.2903 -8.8032 0.0234 26 1 -2.8892 -8.2875 0.0276 27 1 0.5682 -8.5490 0.0044 28 1 2.9569 -7.9698 0.0032 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307099591.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:11 Heat of formation + Delta-G solvation = -5.262650 kcal Electronic energy + Delta-G solvation = -14083.649896 eV Core-core repulsion = 11520.246576 eV Total energy + Delta-G solvation = -2563.403320 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.18288 -38.66716 -35.36377 -33.80008 -32.65373 -31.90711 -29.49277 -26.68649 -24.59814 -23.30965 -21.46046 -20.52886 -18.30675 -17.04880 -16.85376 -15.70389 -15.26945 -15.24800 -14.73837 -14.58738 -13.83796 -13.76529 -13.49576 -13.17917 -12.34018 -12.09647 -11.50377 -10.99983 -10.91222 -10.25044 -10.17338 -9.83898 -9.72379 -9.45902 -9.36773 -9.08577 -8.59449 -6.99072 -6.22555 -4.29154 1.12131 1.73239 3.15428 3.22386 3.29689 3.33320 3.46305 3.97451 4.34057 4.34441 4.84674 5.00494 5.14498 5.29266 5.53268 5.63005 6.04140 6.22163 6.46433 6.70564 6.83649 7.11719 7.31111 7.32369 7.55409 7.77788 7.88143 8.27205 8.49838 8.59595 8.87157 9.37494 10.87735 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.038749 B = 0.006466 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.424382 B = 4329.184783 C = 5036.458242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.249 3.751 10 N -0.696 5.696 11 C 0.409 3.591 12 C -0.177 4.177 13 C -0.056 4.056 14 C 0.563 3.437 15 N -0.851 5.851 16 O -0.528 6.528 17 C -0.238 4.238 18 C 0.147 3.853 19 N -0.547 5.547 20 H 0.267 0.733 21 H 0.027 0.973 22 H 0.027 0.973 23 H 0.400 0.600 24 H 0.148 0.852 25 H 0.401 0.599 26 H 0.403 0.597 27 H 0.125 0.875 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.367 -15.648 0.024 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.084 0.916 9 C 0.128 3.872 10 N -0.321 5.321 11 C 0.169 3.831 12 C -0.204 4.204 13 C -0.067 4.067 14 C 0.349 3.651 15 N -0.416 5.416 16 O -0.404 6.404 17 C -0.263 4.263 18 C -0.011 4.011 19 N -0.267 5.267 20 H 0.076 0.924 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.234 0.766 24 H 0.166 0.834 25 H 0.231 0.769 26 H 0.234 0.766 27 H 0.143 0.857 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.531 -14.358 0.024 14.368 hybrid contribution -0.230 0.242 0.002 0.334 sum 0.301 -14.116 0.026 14.119 Atomic orbital electron populations 1.69967 1.06072 1.27431 1.48784 1.24940 0.94958 0.99528 0.94531 0.86315 0.79881 0.82703 0.77785 1.19573 1.20727 1.20733 1.21172 0.93498 0.90022 1.53303 0.91635 1.19311 0.88436 0.82154 0.97316 1.45499 1.10809 1.01259 1.74573 1.18572 0.88421 0.86776 0.89330 1.21673 0.95516 0.96992 1.06243 1.19856 0.92351 0.94120 1.00360 1.18376 0.88529 0.82761 0.75451 1.43702 1.11787 1.07582 1.78517 1.90847 1.55219 1.45904 1.48415 1.21627 0.94138 0.98446 1.12060 1.22189 0.93846 0.92210 0.92894 1.67110 1.38743 0.99869 1.21021 0.92356 0.95471 0.95478 0.76557 0.83406 0.76950 0.76648 0.85707 0.83055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.29 55.43 0.74 -24.91 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 15 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 7 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 15 8 H 0.07 1.71 7.60 -52.49 -0.40 1.31 15 9 C 0.25 6.35 4.64 -5.20 -0.02 6.33 15 10 N -0.70 -15.20 5.72 -61.62 -0.35 -15.55 15 11 C 0.41 8.24 7.65 -155.07 -1.19 7.06 15 12 C -0.18 -3.52 8.89 -38.78 -0.34 -3.86 15 13 C -0.06 -0.91 5.90 -104.68 -0.62 -1.53 15 14 C 0.56 8.76 8.07 -12.18 -0.10 8.66 15 15 N -0.85 -8.22 8.83 30.60 0.27 -7.95 15 16 O -0.53 -10.62 17.28 5.36 0.09 -10.53 15 17 C -0.24 -3.04 9.61 -39.02 -0.37 -3.42 15 18 C 0.15 2.05 11.16 -17.62 -0.20 1.85 15 19 N -0.55 -9.82 10.37 -12.48 -0.13 -9.95 15 20 H 0.27 7.26 8.31 -40.82 -0.34 6.92 15 21 H 0.03 0.75 7.93 -51.93 -0.41 0.33 15 22 H 0.03 0.74 7.92 -51.93 -0.41 0.33 15 23 H 0.40 8.30 8.44 -40.82 -0.34 7.95 15 24 H 0.15 3.28 6.39 -52.49 -0.34 2.95 15 25 H 0.40 2.60 6.97 -40.82 -0.28 2.31 15 26 H 0.40 3.21 8.93 -40.82 -0.36 2.84 15 27 H 0.13 1.03 6.53 -52.49 -0.34 0.69 15 28 H 0.15 1.51 8.06 -52.49 -0.42 1.08 15 LS Contribution 254.07 15.07 3.83 3.83 Total: -1.00 -32.20 254.07 -6.29 -38.48 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -2.45 Total: 8.90 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -3.26 Total: 1.77 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.52 Total: -58.37 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.20 -6.29 -38.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307099591.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.220 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds