Wall clock time and date at job start Mon Mar 30 2020 03:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00096 * 2 1 4 4 H 1.48502 * 109.46825 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47039 * 299.99524 * 3 2 1 6 6 H 1.48498 * 109.47415 * 59.99848 * 3 2 1 7 7 C 1.37876 * 119.99475 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00507 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47474 * 180.02562 * 9 7 2 11 11 C 1.39021 * 120.00481 * 179.97438 * 10 9 7 12 12 C 1.39129 * 119.64169 * 359.97438 * 11 10 9 13 13 C 1.39500 * 118.92728 * 180.27935 * 12 11 10 14 14 C 1.48164 * 120.87794 * 179.70170 * 13 12 11 15 15 N 1.34776 * 119.99999 * 180.02562 * 14 13 12 16 16 O 1.21510 * 120.00293 * 359.97438 * 14 13 12 17 17 C 1.40016 * 118.23869 * 359.45932 * 13 12 11 18 18 C 1.37943 * 119.17449 * 0.52004 * 17 13 12 19 19 N 1.31916 * 121.00272 * 359.74522 * 18 17 13 20 20 H 0.97006 * 119.99482 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47458 * 59.99364 * 9 7 2 22 22 H 1.09003 * 109.46860 * 299.99887 * 9 7 2 23 23 H 0.97001 * 119.99847 * 359.97438 * 10 9 7 24 24 H 1.08002 * 120.53189 * 359.97438 * 12 11 10 25 25 H 0.96998 * 120.00042 * 359.97438 * 15 14 13 26 26 H 0.97000 * 120.00164 * 180.02562 * 15 14 13 27 27 H 1.08000 * 120.41373 * 180.28551 * 17 13 12 28 28 H 1.07998 * 119.50076 * 179.76638 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0018 11 6 1.7394 -4.9234 0.0025 12 6 0.3700 -5.1691 0.0027 13 6 -0.0785 -6.4900 0.0094 14 6 -1.5271 -6.8011 0.0164 15 7 -1.9409 -8.0838 0.0234 16 8 -2.3421 -5.8999 0.0168 17 6 0.8764 -7.5140 0.0041 18 6 2.2159 -7.1842 0.0035 19 7 2.6054 -5.9239 0.0027 20 1 -0.4850 0.8401 -0.0004 21 1 0.6245 -2.5571 -0.8896 22 1 0.6239 -2.5567 0.8903 23 1 3.1565 -3.4355 0.0021 24 1 -0.3343 -4.3504 0.0026 25 1 -1.2903 -8.8032 0.0234 26 1 -2.8892 -8.2875 0.0276 27 1 0.5682 -8.5490 0.0044 28 1 2.9569 -7.9698 0.0032 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307099591.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:10 Heat of formation + Delta-G solvation = -31.914395 kcal Electronic energy + Delta-G solvation = -14084.805602 eV Core-core repulsion = 11520.246576 eV Total energy + Delta-G solvation = -2564.559027 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.50889 -39.99553 -37.04518 -35.08422 -34.54713 -33.21586 -31.05642 -28.55266 -25.94849 -25.06357 -23.02434 -21.84184 -19.63962 -18.67535 -18.16377 -17.33506 -16.87807 -16.55333 -16.22293 -16.07391 -15.40971 -15.10931 -14.96345 -14.69857 -14.13167 -14.04260 -12.98897 -12.81843 -12.69426 -12.17345 -11.53520 -11.47121 -11.34569 -10.91825 -10.71861 -10.59758 -10.45214 -8.56611 -8.33550 -6.49215 -0.20576 0.43105 1.40237 1.41141 1.54910 1.88264 2.24863 2.36776 2.55289 2.99026 3.03401 3.76639 3.81194 4.08205 4.17489 4.35593 4.77627 4.89267 4.98294 5.16027 5.17816 5.45288 5.67289 5.80963 5.84368 6.08127 6.37560 6.60539 6.90072 7.17665 7.24154 7.30905 8.78489 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.038749 B = 0.006466 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.424382 B = 4329.184783 C = 5036.458242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.558 4.558 8 H 0.075 0.925 9 C 0.275 3.725 10 N -0.708 5.708 11 C 0.387 3.613 12 C -0.218 4.218 13 C -0.060 4.060 14 C 0.561 3.439 15 N -0.813 5.813 16 O -0.587 6.587 17 C -0.198 4.198 18 C 0.148 3.852 19 N -0.554 5.554 20 H 0.270 0.730 21 H -0.006 1.006 22 H -0.006 1.006 23 H 0.402 0.598 24 H 0.104 0.896 25 H 0.422 0.578 26 H 0.416 0.584 27 H 0.188 0.812 28 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 -18.615 0.028 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.093 0.907 9 C 0.152 3.848 10 N -0.337 5.337 11 C 0.151 3.849 12 C -0.245 4.245 13 C -0.071 4.071 14 C 0.346 3.654 15 N -0.379 5.379 16 O -0.467 6.467 17 C -0.221 4.221 18 C -0.011 4.011 19 N -0.273 5.273 20 H 0.079 0.921 21 H 0.012 0.988 22 H 0.012 0.988 23 H 0.238 0.762 24 H 0.122 0.878 25 H 0.256 0.744 26 H 0.249 0.751 27 H 0.205 0.795 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.060 -17.447 0.028 17.569 hybrid contribution -0.731 0.810 0.001 1.091 sum 1.329 -16.638 0.030 16.690 Atomic orbital electron populations 1.70116 1.07999 1.28614 1.49774 1.25992 0.95823 1.03649 0.93759 0.85128 0.78863 0.77437 0.77910 1.18224 1.20142 1.20156 1.21564 0.94105 0.90795 1.53133 0.90683 1.18671 0.88370 0.83589 0.94213 1.45032 1.09936 1.01468 1.77273 1.18555 0.88736 0.86627 0.90991 1.21446 0.94943 0.97929 1.10223 1.20106 0.93808 0.93494 0.99715 1.18393 0.87810 0.83941 0.75289 1.43376 1.13248 1.05798 1.75488 1.90834 1.56330 1.48092 1.51462 1.22281 0.92808 1.00251 1.06765 1.23225 0.95766 0.91588 0.90508 1.67158 1.38543 1.01019 1.20598 0.92098 0.98808 0.98823 0.76234 0.87790 0.74440 0.75092 0.79518 0.77635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.02 15 2 C 0.01 0.44 5.46 84.65 0.46 0.90 15 3 Si 0.98 43.69 29.54 68.60 2.03 45.72 15 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 15 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 15 6 H -0.28 -11.95 7.11 99.48 0.71 -11.25 15 7 C -0.56 -31.59 9.28 25.60 0.24 -31.35 15 8 H 0.08 4.00 7.60 -2.91 -0.02 3.97 15 9 C 0.27 15.24 4.64 85.63 0.40 15.64 15 10 N -0.71 -32.97 5.72 -348.87 -2.00 -34.97 15 11 C 0.39 16.19 7.65 133.08 1.02 17.21 15 12 C -0.22 -9.21 8.89 22.79 0.20 -9.01 15 13 C -0.06 -1.89 5.90 -19.90 -0.12 -2.01 15 14 C 0.56 16.92 8.07 86.88 0.70 17.62 15 15 N -0.81 -12.78 8.83 -175.39 -1.55 -14.33 15 16 O -0.59 -24.63 17.28 -3.75 -0.06 -24.69 15 17 C -0.20 -4.09 9.61 22.63 0.22 -3.87 15 18 C 0.15 3.42 11.16 84.61 0.94 4.37 15 19 N -0.55 -19.02 10.37 -193.41 -2.00 -21.02 15 20 H 0.27 15.28 8.31 -92.70 -0.77 14.51 15 21 H -0.01 -0.36 7.93 -2.39 -0.02 -0.38 15 22 H -0.01 -0.37 7.92 -2.39 -0.02 -0.38 15 23 H 0.40 17.52 8.44 -92.71 -0.78 16.74 15 24 H 0.10 5.25 6.39 -2.91 -0.02 5.23 15 25 H 0.42 3.00 6.97 -92.71 -0.65 2.35 15 26 H 0.42 5.25 8.93 -92.71 -0.83 4.42 15 27 H 0.19 1.55 6.53 -2.91 -0.02 1.53 15 28 H 0.21 2.59 8.06 -2.91 -0.02 2.57 15 Total: -1.00 -77.62 254.07 -0.27 -77.89 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -1.03 Total: 17.92 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 4.06 Total: 9.50 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -5.26 Total: -126.34 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.06 Total: -24.69 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -77.62 -0.27 -77.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307099591.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.974 kcal (2) G-P(sol) polarization free energy of solvation -77.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds