Wall clock time and date at job start Mon Mar 30 2020 03:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86805 * 119.99745 * 2 1 4 4 H 1.48497 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00133 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99959 * 3 2 1 7 7 C 1.40050 * 120.00167 * 180.27373 * 2 1 3 8 8 H 1.08001 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.41583 * 120.00152 * 0.02562 * 7 2 1 10 10 N 1.33472 * 119.27231 * 359.97438 * 9 7 2 11 11 C 1.32290 * 120.49299 * 180.02562 * 10 9 7 12 12 O 1.35511 * 120.40292 * 179.97438 * 11 10 9 13 13 C 1.40146 * 119.18883 * 359.91248 * 11 10 9 14 14 C 1.38111 * 118.68605 * 359.95834 * 13 11 10 15 15 N 1.32386 * 119.24524 * 359.90354 * 14 13 11 16 16 C 1.50586 * 121.61529 * 180.25844 * 14 13 11 17 17 C 1.52953 * 109.84465 * 343.09967 * 16 14 13 18 18 N 1.47149 * 108.63022 * 50.39504 * 17 16 14 19 19 C 1.46719 * 110.34090 * 288.75742 * 18 17 16 20 20 H 0.97005 * 120.00041 * 359.72383 * 1 2 3 21 21 H 0.96704 * 114.00147 * 90.00583 * 12 11 10 22 22 H 1.08996 * 109.40890 * 222.98308 * 16 14 13 23 23 H 1.08999 * 109.40747 * 103.21518 * 16 14 13 24 24 H 1.09002 * 109.61219 * 290.65233 * 17 16 14 25 25 H 1.08997 * 109.75318 * 170.21831 * 17 16 14 26 26 H 1.00899 * 111.00077 * 165.27863 * 18 17 16 27 27 H 1.08994 * 109.32144 * 292.03000 * 19 18 17 28 28 H 1.08997 * 109.17031 * 172.48284 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 1.2759 2.7465 0.0006 5 1 3.0947 1.6965 1.2125 6 1 3.0946 1.6965 -1.2125 7 6 2.0072 -1.2128 -0.0058 8 1 3.0872 -1.2129 -0.0062 9 6 1.2994 -2.4390 -0.0122 10 7 -0.0352 -2.4221 -0.0121 11 6 -0.7209 -3.5535 -0.0175 12 8 -2.0759 -3.5342 -0.0169 13 6 -0.0288 -4.7721 -0.0252 14 6 1.3522 -4.7502 -0.0278 15 7 1.9805 -3.5850 -0.0249 16 6 2.1618 -6.0198 -0.0418 17 6 1.2811 -7.2017 0.3668 18 7 0.0522 -7.1740 -0.4422 19 6 -0.8065 -6.0591 -0.0272 20 1 -0.4850 0.8401 0.0040 21 1 -2.4695 -3.5243 -0.9001 22 1 2.9920 -5.9277 0.6584 23 1 2.5526 -6.1891 -1.0451 24 1 1.0255 -7.1196 1.4233 25 1 1.8138 -8.1362 0.1908 26 1 -0.4408 -8.0522 -0.3810 27 1 -1.1879 -6.2515 0.9756 28 1 -1.6428 -5.9740 -0.7210 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307128931.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:41 Heat of formation + Delta-G solvation = 4.762221 kcal Electronic energy + Delta-G solvation = -14877.666329 eV Core-core repulsion = 12314.697720 eV Total energy + Delta-G solvation = -2562.968609 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.61186 -36.74916 -36.31554 -33.61865 -31.74287 -30.18702 -29.65532 -26.82472 -23.54803 -22.93788 -21.46860 -19.82716 -17.70388 -17.17760 -16.63755 -15.34057 -14.93980 -14.41364 -14.26271 -13.99486 -13.13397 -12.91400 -12.56281 -12.50445 -11.70014 -11.45580 -11.23097 -11.10948 -11.00740 -10.73177 -10.54887 -10.27344 -9.37170 -8.96692 -8.70934 -8.23462 -7.72517 -7.42955 -6.55536 -4.75906 2.45742 2.76883 3.04183 3.07214 3.09492 3.86459 4.50434 4.59239 4.85106 5.24294 5.42791 5.64165 5.79988 5.85611 5.98084 6.03692 6.19282 6.28696 6.45698 6.50646 6.70141 7.04635 7.09543 7.33506 7.42908 7.74536 8.08106 8.25076 8.52555 8.71425 9.02132 10.08338 10.23102 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.046189 B = 0.008819 C = 0.007491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.061128 B = 3174.112286 C = 3736.725111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.708 5.708 2 C 0.064 3.936 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.397 4.397 8 H 0.095 0.905 9 C 0.408 3.592 10 N -0.520 5.520 11 C 0.362 3.638 12 O -0.492 6.492 13 C -0.348 4.348 14 C 0.213 3.787 15 N -0.601 5.601 16 C -0.059 4.059 17 C 0.060 3.940 18 N -0.686 5.686 19 C 0.143 3.857 20 H 0.277 0.723 21 H 0.386 0.614 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.031 0.969 25 H 0.073 0.927 26 H 0.334 0.666 27 H 0.020 0.980 28 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.656 -6.984 -0.714 7.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.329 5.329 2 C -0.163 4.163 3 Si 0.744 3.256 4 H -0.201 1.201 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.432 4.432 8 H 0.114 0.886 9 C 0.171 3.829 10 N -0.247 5.247 11 C 0.166 3.834 12 O -0.297 6.297 13 C -0.360 4.360 14 C 0.061 3.939 15 N -0.322 5.322 16 C -0.097 4.097 17 C -0.070 4.070 18 N -0.316 5.316 19 C 0.013 3.987 20 H 0.088 0.912 21 H 0.241 0.759 22 H 0.096 0.904 23 H 0.099 0.901 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.151 0.849 27 H 0.038 0.962 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.020 -5.546 -0.630 5.582 hybrid contribution -0.789 -0.334 0.379 0.937 sum -0.809 -5.880 -0.251 5.941 Atomic orbital electron populations 1.70145 1.07307 1.28390 1.27060 1.26146 0.95053 1.01499 0.93604 0.86170 0.79869 0.79402 0.80151 1.20101 1.18694 1.18655 1.19361 0.94777 0.87449 1.41605 0.88648 1.19662 0.84127 0.90877 0.88202 1.68899 1.09158 1.26642 1.19952 1.19533 0.83539 0.88477 0.91898 1.84616 1.16149 1.96189 1.32756 1.20269 0.95050 0.94470 1.26173 1.20512 0.89632 0.93516 0.90222 1.68596 1.40596 0.97768 1.25254 1.20288 0.96758 0.90204 1.02453 1.21920 0.91869 0.98204 0.94964 1.60621 1.07626 1.06256 1.57124 1.20035 0.93592 0.88137 0.96956 0.91204 0.75856 0.90387 0.90100 0.95048 0.90875 0.84899 0.96156 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.95 11.42 55.55 0.63 -18.32 15 2 C 0.06 1.64 5.50 -17.36 -0.10 1.55 15 3 Si 0.92 18.58 29.56 -169.99 -5.02 13.56 15 4 H -0.28 -5.38 7.11 56.52 0.40 -4.98 15 5 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 7 C -0.40 -10.99 9.38 -37.63 -0.35 -11.34 15 8 H 0.10 2.51 7.85 -52.49 -0.41 2.10 15 9 C 0.41 11.79 7.37 -158.41 -1.17 10.62 15 10 N -0.52 -14.89 7.90 -12.67 -0.10 -14.99 15 11 C 0.36 9.16 7.80 -16.64 -0.13 9.03 15 12 O -0.49 -10.65 12.84 -18.23 -0.23 -10.88 15 13 C -0.35 -8.08 5.84 -104.11 -0.61 -8.68 15 14 C 0.21 5.06 6.67 -82.46 -0.55 4.51 15 15 N -0.60 -16.28 10.26 -9.08 -0.09 -16.37 15 16 C -0.06 -1.08 6.21 -27.96 -0.17 -1.26 15 17 C 0.06 0.92 6.58 -3.71 -0.02 0.90 15 18 N -0.69 -10.83 6.88 -115.21 -0.79 -11.62 15 19 C 0.14 2.62 6.02 -5.23 -0.03 2.59 15 20 H 0.28 6.68 8.29 -40.82 -0.34 6.34 15 21 H 0.39 6.38 9.06 45.56 0.41 6.80 15 22 H 0.08 1.36 8.14 -51.93 -0.42 0.93 15 23 H 0.08 1.44 8.14 -51.93 -0.42 1.02 15 24 H 0.03 0.49 8.05 -51.93 -0.42 0.07 15 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 26 H 0.33 4.16 8.90 -39.29 -0.35 3.81 15 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 28 H 0.07 1.12 7.91 -51.93 -0.41 0.71 15 LS Contribution 244.17 15.07 3.68 3.68 Total: -1.00 -32.37 244.17 -7.06 -39.43 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -2.00 Total: 7.59 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -3.13 Total: 7.92 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: -0.35 Total: -61.30 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -0.23 Total: -10.88 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -32.37 -7.06 -39.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307128931.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.197 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds