Wall clock time and date at job start Mon Mar 30 2020 03:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86805 * 119.99745 * 2 1 4 4 H 1.48497 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00133 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99959 * 3 2 1 7 7 C 1.40050 * 120.00167 * 180.27373 * 2 1 3 8 8 H 1.08001 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.41583 * 120.00152 * 0.02562 * 7 2 1 10 10 N 1.33472 * 119.27231 * 359.97438 * 9 7 2 11 11 C 1.32290 * 120.49299 * 180.02562 * 10 9 7 12 12 O 1.35511 * 120.40292 * 179.97438 * 11 10 9 13 13 C 1.40146 * 119.18883 * 359.91248 * 11 10 9 14 14 C 1.38111 * 118.68605 * 359.95834 * 13 11 10 15 15 N 1.32386 * 119.24524 * 359.90354 * 14 13 11 16 16 C 1.50586 * 121.61529 * 180.25844 * 14 13 11 17 17 C 1.52953 * 109.84465 * 343.09967 * 16 14 13 18 18 N 1.47149 * 108.63022 * 50.39504 * 17 16 14 19 19 C 1.46719 * 110.34090 * 288.75742 * 18 17 16 20 20 H 0.97005 * 120.00041 * 359.72383 * 1 2 3 21 21 H 0.96704 * 114.00147 * 90.00583 * 12 11 10 22 22 H 1.08996 * 109.40890 * 222.98308 * 16 14 13 23 23 H 1.08999 * 109.40747 * 103.21518 * 16 14 13 24 24 H 1.09002 * 109.61219 * 290.65233 * 17 16 14 25 25 H 1.08997 * 109.75318 * 170.21831 * 17 16 14 26 26 H 1.00899 * 111.00077 * 165.27863 * 18 17 16 27 27 H 1.08994 * 109.32144 * 292.03000 * 19 18 17 28 28 H 1.08997 * 109.17031 * 172.48284 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 1.2759 2.7465 0.0006 5 1 3.0947 1.6965 1.2125 6 1 3.0946 1.6965 -1.2125 7 6 2.0072 -1.2128 -0.0058 8 1 3.0872 -1.2129 -0.0062 9 6 1.2994 -2.4390 -0.0122 10 7 -0.0352 -2.4221 -0.0121 11 6 -0.7209 -3.5535 -0.0175 12 8 -2.0759 -3.5342 -0.0169 13 6 -0.0288 -4.7721 -0.0252 14 6 1.3522 -4.7502 -0.0278 15 7 1.9805 -3.5850 -0.0249 16 6 2.1618 -6.0198 -0.0418 17 6 1.2811 -7.2017 0.3668 18 7 0.0522 -7.1740 -0.4422 19 6 -0.8065 -6.0591 -0.0272 20 1 -0.4850 0.8401 0.0040 21 1 -2.4695 -3.5243 -0.9001 22 1 2.9920 -5.9277 0.6584 23 1 2.5526 -6.1891 -1.0451 24 1 1.0255 -7.1196 1.4233 25 1 1.8138 -8.1362 0.1908 26 1 -0.4408 -8.0522 -0.3810 27 1 -1.1879 -6.2515 0.9756 28 1 -1.6428 -5.9740 -0.7210 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307128931.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:40 Heat of formation + Delta-G solvation = -23.339347 kcal Electronic energy + Delta-G solvation = -14878.884904 eV Core-core repulsion = 12314.697720 eV Total energy + Delta-G solvation = -2564.187185 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.44881 -38.34497 -38.05320 -35.49054 -33.52919 -31.92841 -31.31700 -28.69986 -25.18305 -24.61368 -23.26553 -21.48412 -19.46243 -19.09557 -18.35195 -17.02751 -16.64031 -16.03224 -15.81075 -15.49489 -14.80462 -14.59972 -14.27531 -14.13886 -13.32759 -13.10256 -12.93941 -12.74986 -12.69051 -12.29064 -12.12273 -11.91443 -11.18668 -10.82697 -10.66903 -9.78732 -9.40225 -9.33386 -8.45919 -6.78976 0.55622 0.87124 1.38738 1.50880 1.53714 2.18462 2.63849 3.04021 3.34036 3.70063 3.75190 4.03054 4.32116 4.41349 4.45089 4.52155 4.64957 4.87279 4.89591 4.94620 5.09289 5.16516 5.34213 5.69197 5.98498 6.07589 6.35040 6.55952 6.64262 6.91812 7.08395 8.13666 8.32534 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.046189 B = 0.008819 C = 0.007491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.061128 B = 3174.112286 C = 3736.725111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.022 3.978 3 Si 1.004 2.996 4 H -0.263 1.263 5 H -0.257 1.257 6 H -0.255 1.255 7 C -0.435 4.435 8 H 0.095 0.905 9 C 0.378 3.622 10 N -0.559 5.559 11 C 0.345 3.655 12 O -0.490 6.490 13 C -0.347 4.347 14 C 0.193 3.807 15 N -0.627 5.627 16 C -0.058 4.058 17 C 0.066 3.934 18 N -0.687 5.687 19 C 0.149 3.851 20 H 0.285 0.715 21 H 0.407 0.593 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.030 0.970 25 H 0.116 0.884 26 H 0.359 0.641 27 H 0.026 0.974 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.529 -8.161 -0.849 8.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.202 4.202 3 Si 0.822 3.178 4 H -0.187 1.187 5 H -0.181 1.181 6 H -0.179 1.179 7 C -0.470 4.470 8 H 0.113 0.887 9 C 0.140 3.860 10 N -0.287 5.287 11 C 0.150 3.850 12 O -0.299 6.299 13 C -0.358 4.358 14 C 0.043 3.957 15 N -0.349 5.349 16 C -0.096 4.096 17 C -0.064 4.064 18 N -0.319 5.319 19 C 0.018 3.982 20 H 0.095 0.905 21 H 0.266 0.734 22 H 0.104 0.896 23 H 0.106 0.894 24 H 0.048 0.952 25 H 0.134 0.866 26 H 0.179 0.821 27 H 0.043 0.957 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.062 -6.802 -0.780 6.847 hybrid contribution -0.905 -0.127 0.405 0.999 sum -0.842 -6.929 -0.375 6.990 Atomic orbital electron populations 1.70230 1.09090 1.29877 1.27701 1.27153 0.95897 1.04879 0.92238 0.84953 0.78417 0.74064 0.80373 1.18677 1.18094 1.17890 1.19724 0.95042 0.88610 1.43647 0.88727 1.20109 0.84806 0.92038 0.89037 1.68845 1.09402 1.28567 1.21889 1.19933 0.84632 0.88833 0.91637 1.84557 1.14526 1.96115 1.34654 1.20782 0.95316 0.95986 1.23694 1.21486 0.90874 0.94480 0.88900 1.68656 1.41201 0.98538 1.26494 1.20451 0.97043 0.88890 1.03220 1.21963 0.91396 0.98417 0.94610 1.60520 1.07660 1.06685 1.57058 1.19964 0.93568 0.86868 0.97760 0.90465 0.73398 0.89637 0.89394 0.95218 0.86585 0.82109 0.95655 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.09 11.42 21.84 0.25 -40.84 15 2 C 0.02 1.14 5.50 85.30 0.47 1.61 15 3 Si 1.00 38.44 29.56 68.60 2.03 40.47 15 4 H -0.26 -9.37 7.11 99.48 0.71 -8.66 15 5 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 6 H -0.25 -9.37 7.11 99.48 0.71 -8.67 15 7 C -0.44 -25.01 9.38 23.54 0.22 -24.79 15 8 H 0.09 5.19 7.85 -2.91 -0.02 5.16 15 9 C 0.38 22.69 7.37 135.19 1.00 23.69 15 10 N -0.56 -33.10 7.90 -306.93 -2.43 -35.52 15 11 C 0.34 17.65 7.80 85.09 0.66 18.32 15 12 O -0.49 -21.12 12.84 -88.14 -1.13 -22.25 15 13 C -0.35 -15.92 5.84 -19.53 -0.11 -16.03 15 14 C 0.19 9.16 6.67 42.41 0.28 9.44 15 15 N -0.63 -34.88 10.26 -182.63 -1.87 -36.76 15 16 C -0.06 -2.03 6.21 29.80 0.19 -1.84 15 17 C 0.07 1.76 6.58 86.24 0.57 2.33 15 18 N -0.69 -19.15 6.88 -518.43 -3.56 -22.71 15 19 C 0.15 5.10 6.02 85.49 0.51 5.61 15 20 H 0.28 13.99 8.29 -92.70 -0.77 13.22 15 21 H 0.41 13.21 9.06 -74.05 -0.67 12.54 15 22 H 0.09 2.85 8.14 -2.39 -0.02 2.83 15 23 H 0.09 2.96 8.14 -2.39 -0.02 2.94 15 24 H 0.03 0.82 8.05 -2.39 -0.02 0.80 15 25 H 0.12 2.19 8.14 -2.39 -0.02 2.17 15 26 H 0.36 7.30 8.90 -89.70 -0.80 6.50 15 27 H 0.03 0.86 8.14 -2.39 -0.02 0.84 15 28 H 0.08 2.51 7.91 -2.39 -0.02 2.49 15 Total: -1.00 -72.71 244.17 -3.19 -75.90 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -0.26 Total: 23.38 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 3.79 Total: 18.34 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -7.61 Total: -135.83 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -1.13 Total: -22.25 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -72.71 -3.19 -75.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307128931.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.556 kcal (2) G-P(sol) polarization free energy of solvation -72.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds