Wall clock time and date at job start Mon Mar 30 2020 03:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27941 * 1 3 3 Si 1.86800 * 120.00102 * 2 1 4 4 H 1.48491 * 109.47308 * 270.00114 * 3 2 1 5 5 H 1.48507 * 109.46909 * 30.00173 * 3 2 1 6 6 H 1.48504 * 109.47141 * 149.99951 * 3 2 1 7 7 C 1.50706 * 120.00023 * 180.02562 * 2 1 3 8 8 C 1.55187 * 110.53125 * 19.87761 * 7 2 1 9 9 C 1.55381 * 101.81724 * 209.68448 * 8 7 2 10 10 H 1.09003 * 110.75896 * 157.73574 * 9 8 7 11 11 C 1.50700 * 110.62625 * 280.67669 * 9 8 7 12 12 N 1.34776 * 120.00469 * 275.49290 * 11 9 8 13 13 O 1.21283 * 119.99698 * 95.49694 * 11 9 8 14 14 N 1.46368 * 103.46216 * 39.17640 * 9 8 7 15 15 N 1.40728 * 129.61069 * 143.00680 * 14 9 8 16 16 C 1.31216 * 115.98184 * 216.45675 * 15 14 9 17 17 C 1.46605 * 120.07134 * 2.07476 * 16 15 14 18 18 C 1.33469 * 122.05570 * 342.34428 * 17 16 15 19 19 C 1.47827 * 108.46676 * 327.89625 * 14 9 8 20 20 H 1.09005 * 110.50372 * 251.48796 * 19 14 9 21 21 H 0.97000 * 119.99880 * 0.02562 * 1 2 3 22 22 H 1.08998 * 110.47737 * 142.69262 * 7 2 1 23 23 H 1.08999 * 110.96172 * 327.82051 * 8 7 2 24 24 H 1.09001 * 110.95299 * 91.55356 * 8 7 2 25 25 H 0.96997 * 119.99926 * 0.02562 * 12 11 9 26 26 H 0.96999 * 120.00082 * 179.97438 * 12 11 9 27 27 H 1.08002 * 119.96152 * 182.04930 * 16 15 14 28 28 H 1.08007 * 118.97365 * 162.37332 * 17 16 15 29 29 H 1.08000 * 120.69968 * 180.28094 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6177 0.0000 4 1 2.4609 2.0464 -1.4000 5 1 1.4108 2.6527 0.7001 6 1 3.5110 1.4401 0.7001 7 6 2.0329 -1.3052 -0.0006 8 6 1.1215 -2.4596 -0.4952 9 6 1.7089 -3.6785 0.2688 10 1 0.9714 -4.4773 0.3472 11 6 2.9591 -4.1775 -0.4089 12 7 2.8680 -5.0383 -1.4419 13 8 4.0472 -3.8045 -0.0245 14 7 2.0214 -3.1336 1.5908 15 7 1.9073 -3.7338 2.8585 16 6 1.5316 -2.9440 3.8368 17 6 1.2149 -1.5385 3.5657 18 6 1.6111 -0.9258 2.4481 19 6 2.4035 -1.7142 1.4339 20 1 3.4727 -1.5857 1.6025 21 1 -0.4850 0.8401 -0.0004 22 1 2.9270 -1.2290 -0.6194 23 1 0.0834 -2.2854 -0.2123 24 1 1.2130 -2.5940 -1.5731 25 1 1.9977 -5.3364 -1.7495 26 1 3.6727 -5.3591 -1.8782 27 1 1.4553 -3.3300 4.8426 28 1 0.6435 -0.9812 4.2934 29 1 1.3692 0.1120 2.2729 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307312706.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:58 Heat of formation + Delta-G solvation = 70.246885 kcal Electronic energy + Delta-G solvation = -15748.193357 eV Core-core repulsion = 13174.408637 eV Total energy + Delta-G solvation = -2573.784720 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.098 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.59801 -39.54316 -37.51150 -35.50671 -34.53830 -33.41289 -30.38769 -29.96244 -24.73488 -24.40279 -24.12445 -21.49208 -20.39179 -19.13890 -18.12558 -17.92747 -17.49196 -17.08672 -16.90417 -15.99446 -15.71687 -14.96840 -14.81953 -14.59820 -14.10853 -13.98329 -13.69691 -13.09244 -12.94639 -12.74465 -12.43774 -12.14410 -12.00242 -11.46732 -11.33401 -10.85627 -10.59569 -10.25955 -9.96053 -8.55185 0.28798 0.66257 0.91634 1.28461 1.44750 1.57686 1.75706 1.78070 1.95953 2.64251 3.20884 3.47033 3.60333 3.75226 3.87969 3.96700 3.97567 4.15958 4.37600 4.42761 4.65869 4.73017 4.82176 4.90625 5.15147 5.22818 5.29819 5.47659 5.83183 6.01592 6.40226 6.73784 7.22635 7.38070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C 0.005 3.995 3 Si 0.919 3.081 4 H -0.235 1.235 5 H -0.242 1.242 6 H -0.226 1.226 7 C -0.066 4.066 8 C -0.109 4.109 9 C 0.157 3.843 10 H 0.106 0.894 11 C 0.506 3.494 12 N -0.855 5.855 13 O -0.526 6.526 14 N -0.531 5.531 15 N -0.186 5.186 16 C 0.058 3.942 17 C -0.149 4.149 18 C -0.140 4.140 19 C 0.172 3.828 20 H 0.088 0.912 21 H 0.339 0.661 22 H 0.108 0.892 23 H 0.110 0.890 24 H 0.089 0.911 25 H 0.401 0.599 26 H 0.402 0.598 27 H 0.176 0.824 28 H 0.128 0.872 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 1.529 -2.274 4.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.236 5.236 2 C -0.244 4.244 3 Si 0.733 3.267 4 H -0.158 1.158 5 H -0.165 1.165 6 H -0.148 1.148 7 C -0.087 4.087 8 C -0.149 4.149 9 C 0.047 3.953 10 H 0.124 0.876 11 C 0.288 3.712 12 N -0.420 5.420 13 O -0.400 6.400 14 N -0.344 5.344 15 N 0.012 4.988 16 C -0.150 4.150 17 C -0.170 4.170 18 C -0.166 4.166 19 C 0.064 3.936 20 H 0.106 0.894 21 H 0.157 0.843 22 H 0.126 0.874 23 H 0.129 0.871 24 H 0.108 0.892 25 H 0.230 0.770 26 H 0.234 0.766 27 H 0.193 0.807 28 H 0.146 0.854 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.299 0.810 -2.139 3.243 hybrid contribution -0.345 1.114 -0.132 1.173 sum -2.643 1.924 -2.271 3.981 Atomic orbital electron populations 1.68110 1.09875 1.37001 1.08583 1.29926 0.96777 1.05214 0.92453 0.85941 0.82073 0.75169 0.83470 1.15795 1.16454 1.14798 1.21391 0.98677 0.92231 0.96400 1.23006 1.01401 0.90640 0.99834 1.21299 0.93645 0.98334 0.81990 0.87650 1.21192 0.91761 0.78431 0.79779 1.43894 1.12706 1.49277 1.36143 1.90745 1.29087 1.57030 1.63148 1.50582 1.75495 1.08356 1.00002 1.76557 1.09729 1.23367 0.89190 1.25565 0.96748 0.92952 0.99687 1.21959 1.02120 0.94603 0.98302 1.24075 0.99811 0.99198 0.93482 1.20782 0.98444 0.82119 0.92231 0.89410 0.84340 0.87363 0.87146 0.89235 0.77038 0.76638 0.80678 0.85441 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 0.40 12.19 56.23 0.69 1.08 15 2 C 0.01 -0.01 3.03 -13.90 -0.04 -0.05 15 3 Si 0.92 -1.52 28.24 -169.99 -4.80 -6.32 15 4 H -0.23 0.23 7.11 56.52 0.40 0.63 15 5 H -0.24 0.32 7.11 56.52 0.40 0.72 15 6 H -0.23 0.22 7.11 56.52 0.40 0.62 15 7 C -0.07 0.01 2.57 -90.25 -0.23 -0.23 15 8 C -0.11 0.09 5.90 -24.31 -0.14 -0.06 15 9 C 0.16 0.14 3.96 -67.89 -0.27 -0.13 15 10 H 0.11 -0.05 8.14 -51.93 -0.42 -0.47 15 11 C 0.51 0.98 7.10 -10.99 -0.08 0.90 15 12 N -0.86 1.69 8.87 31.22 0.28 1.97 15 13 O -0.53 -3.36 16.99 5.56 0.09 -3.26 15 14 N -0.53 -1.75 3.52 -100.04 -0.35 -2.11 15 15 N -0.19 -0.77 12.21 32.18 0.39 -0.38 15 16 C 0.06 0.09 11.51 -14.44 -0.17 -0.08 15 17 C -0.15 -0.11 10.01 -37.88 -0.38 -0.49 15 18 C -0.14 -0.13 8.65 -35.86 -0.31 -0.44 15 19 C 0.17 0.35 3.30 -67.88 -0.22 0.12 15 20 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 15 21 H 0.34 -0.71 8.23 -40.82 -0.34 -1.04 15 22 H 0.11 -0.09 7.93 -51.93 -0.41 -0.50 15 23 H 0.11 0.00 6.96 -51.93 -0.36 -0.36 15 24 H 0.09 -0.24 8.07 -51.93 -0.42 -0.66 15 25 H 0.40 -2.01 8.83 -40.82 -0.36 -2.37 15 26 H 0.40 -0.96 8.93 -40.82 -0.36 -1.33 15 27 H 0.18 -0.26 8.06 -52.49 -0.42 -0.68 15 28 H 0.13 -0.17 8.06 -52.48 -0.42 -0.60 15 29 H 0.12 -0.08 5.60 -52.49 -0.29 -0.38 15 LS Contribution 246.32 15.07 3.71 3.71 Total: 0.00 -7.44 246.32 -4.87 -12.31 By element: Atomic # 1 Polarization: -3.52 SS G_CDS: -3.03 Total: -6.55 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.84 Total: -0.44 kcal Atomic # 7 Polarization: -0.44 SS G_CDS: 1.00 Total: 0.56 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: 0.09 Total: -3.26 kcal Atomic # 14 Polarization: -1.52 SS G_CDS: -4.80 Total: -6.32 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -7.44 -4.87 -12.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307312706.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.558 kcal (2) G-P(sol) polarization free energy of solvation -7.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds